RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 HECW1Q76N89 1606 aa24.96■■□□□ 1.59
VPS29-209ENST00000551655 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.95■■□□□ 1.58
VPS29-209ENST00000551655 CEBPAP49715 358 aaPredicted RBP24.94■■□□□ 1.58
VPS29-209ENST00000551655 ARHGEF12Q9NZN5 1544 aa24.91■■□□□ 1.58
VPS29-209ENST00000551655 MAGI2Q86UL8 1455 aa24.88■■□□□ 1.57
VPS29-209ENST00000551655 RANGAP1P46060 587 aaPredicted RBP24.86■■□□□ 1.57
VPS29-209ENST00000551655 PLEKHD1A6NEE1 506 aa24.85■■□□□ 1.57
VPS29-209ENST00000551655 SCAPERQ9BY12 1400 aa24.82■■□□□ 1.56
VPS29-209ENST00000551655 DMRT2Q9Y5R5 561 aa24.82■■□□□ 1.56
VPS29-209ENST00000551655 UHRF1BP1Q6BDS2 1440 aa24.8■■□□□ 1.56
VPS29-209ENST00000551655 ATP10AO60312 1499 aa24.8■■□□□ 1.56
VPS29-209ENST00000551655 C9orf84Q5VXU9 1444 aa24.79■■□□□ 1.56
VPS29-209ENST00000551655 LTBP4Q8N2S1 1624 aa24.78■■□□□ 1.56
VPS29-209ENST00000551655 PTPRTO14522 1441 aa24.74■■□□□ 1.55
VPS29-209ENST00000551655 CDK13Q14004 1512 aaKnown RBP24.74■■□□□ 1.55
VPS29-209ENST00000551655 PLCH2O75038 1416 aa24.7■■□□□ 1.55
VPS29-209ENST00000551655 C3P01024 1663 aa24.7■■□□□ 1.54
VPS29-209ENST00000551655 SETD1BQ9UPS6 1966 aaKnown RBP24.69■■□□□ 1.54
VPS29-209ENST00000551655 MYO5CQ9NQX4 1742 aa24.64■■□□□ 1.54
VPS29-209ENST00000551655 IQSEC2Q5JU85 1478 aa24.64■■□□□ 1.53
VPS29-209ENST00000551655 DIP2CQ9Y2E4 1556 aa24.63■■□□□ 1.53
VPS29-209ENST00000551655 CSRNP3Q8WYN3 585 aa24.62■■□□□ 1.53
VPS29-209ENST00000551655 NCOA1Q15788 1441 aa24.61■■□□□ 1.53
VPS29-209ENST00000551655 AFAP1Q8N556 730 aa24.6■■□□□ 1.53
VPS29-209ENST00000551655 KDM5CP41229 1560 aa24.59■■□□□ 1.53
VPS29-209ENST00000551655 ABCA6Q8N139 1617 aa24.59■■□□□ 1.53
VPS29-209ENST00000551655 ZNF518AQ6AHZ1 1483 aa24.58■■□□□ 1.53
VPS29-209ENST00000551655 KIF14Q15058 1648 aa24.58■■□□□ 1.53
VPS29-209ENST00000551655 EFCAB2Q5VUJ9 269 aa24.58■■□□□ 1.53
VPS29-209ENST00000551655 MYT1LQ9UL68 1186 aa24.57■■□□□ 1.52
VPS29-209ENST00000551655 TRAPPC8Q9Y2L5 1435 aa24.54■■□□□ 1.52
VPS29-209ENST00000551655 UBAP1LF5GYI3 381 aa24.54■■□□□ 1.52
VPS29-209ENST00000551655 CAMSAP1Q5T5Y3 1602 aa24.53■■□□□ 1.52
VPS29-209ENST00000551655 REREQ9P2R6 1566 aa24.53■■□□□ 1.52
VPS29-209ENST00000551655 ZNF335Q9H4Z2 1342 aaPredicted RBP24.53■■□□□ 1.52
VPS29-209ENST00000551655 ARHGAP5Q13017 1502 aa24.52■■□□□ 1.52
VPS29-209ENST00000551655 NCKAP5LQ9HCH0 1330 aa24.49■■□□□ 1.51
VPS29-209ENST00000551655 ATP1B4Q9UN42 357 aaPredicted RBP24.48■■□□□ 1.51
VPS29-209ENST00000551655 ESF1Q9H501 851 aaKnown RBP24.47■■□□□ 1.51
VPS29-209ENST00000551655 AGLP35573 1532 aa24.45■■□□□ 1.51
VPS29-209ENST00000551655 MED1Q15648 1581 aaPredicted RBP24.45■■□□□ 1.5
VPS29-209ENST00000551655 MLH3Q9UHC1 1453 aa24.44■■□□□ 1.5
VPS29-209ENST00000551655 CDC42BPBQ9Y5S2 1711 aa24.43■■□□□ 1.5
VPS29-209ENST00000551655 KIDINS220Q9ULH0 1771 aa24.39■■□□□ 1.49
VPS29-209ENST00000551655 ITSN2Q9NZM3 1697 aa24.37■■□□□ 1.49
VPS29-209ENST00000551655 TROQ12816 1431 aaPredicted RBP24.37■■□□□ 1.49
VPS29-209ENST00000551655 CNTLNQ9NXG0 1405 aa24.37■■□□□ 1.49
VPS29-209ENST00000551655 ABCC1P33527 1531 aa24.37■■□□□ 1.49
VPS29-209ENST00000551655 HSPA1LP34931 641 aa24.37■■□□□ 1.49
VPS29-209ENST00000551655 LRRIQ1Q96JM4 1722 aa24.37■■□□□ 1.49
VPS29-209ENST00000551655 MROH2AA6NES4 1674 aa24.37■■□□□ 1.49
VPS29-209ENST00000551655 NPATQ14207 1427 aa24.35■■□□□ 1.49
VPS29-209ENST00000551655 MYO3AQ8NEV4 1616 aa24.35■■□□□ 1.49
VPS29-209ENST00000551655 SUPT6HQ7KZ85 1726 aaKnown RBP24.35■■□□□ 1.49
VPS29-209ENST00000551655 SCAF1Q9H7N4 1312 aaKnown RBP24.35■■□□□ 1.49
VPS29-209ENST00000551655 ZNF142P52746 1687 aaPredicted RBP24.33■■□□□ 1.49
VPS29-209ENST00000551655 PREX2Q70Z35 1606 aa24.32■■□□□ 1.48
VPS29-209ENST00000551655 ZMYM3Q14202 1370 aa24.32■■□□□ 1.48
VPS29-209ENST00000551655 CDK11AQ9UQ88 783 aaPredicted RBP24.32■■□□□ 1.48
VPS29-209ENST00000551655 PIP4K2BP78356 416 aa24.31■■□□□ 1.48
VPS29-209ENST00000551655 CLTCQ00610 1675 aaKnown RBP24.3■■□□□ 1.48
VPS29-209ENST00000551655 EHMT2Q96KQ7 1210 aa24.3■■□□□ 1.48
VPS29-209ENST00000551655 TCOF1Q13428 1488 aaKnown RBP24.3■■□□□ 1.48
VPS29-209ENST00000551655 CLIP1P30622 1438 aa24.29■■□□□ 1.48
VPS29-209ENST00000551655 PLA2R1Q13018 1463 aa24.29■■□□□ 1.48
VPS29-209ENST00000551655 CEP170BQ9Y4F5 1589 aaPredicted RBP24.29■■□□□ 1.48
VPS29-209ENST00000551655 EEA1Q15075 1411 aa24.28■■□□□ 1.48
VPS29-209ENST00000551655 FMN1Q68DA7 1419 aa24.28■■□□□ 1.48
VPS29-209ENST00000551655 PKD2Q13563 968 aa24.26■■□□□ 1.47
VPS29-209ENST00000551655 ARHGAP35Q9NRY4 1499 aa24.26■■□□□ 1.47
VPS29-209ENST00000551655 PPP6R1Q9UPN7 881 aa24.24■■□□□ 1.47
VPS29-209ENST00000551655 SAMD9LQ8IVG5 1584 aa24.24■■□□□ 1.47
VPS29-209ENST00000551655 PTPRKQ15262 1439 aa24.22■■□□□ 1.47
VPS29-209ENST00000551655 CDC42BPAQ5VT25 1732 aa24.21■■□□□ 1.47
VPS29-209ENST00000551655 PHF23Q9BUL5 403 aaPredicted RBP24.19■■□□□ 1.46
VPS29-209ENST00000551655 SYCP2Q9BX26 1530 aa24.16■■□□□ 1.46
VPS29-209ENST00000551655 DNMT1P26358 1616 aaKnown RBP24.14■■□□□ 1.46
VPS29-209ENST00000551655 ALKQ9UM73 1620 aa24.14■■□□□ 1.46
VPS29-209ENST00000551655 PLXNC1O60486 1568 aa24.14■■□□□ 1.45
VPS29-209ENST00000551655 TOM1O60784 492 aa24.14■■□□□ 1.45
VPS29-209ENST00000551655 NEURL4Q96JN8 1562 aa24.14■■□□□ 1.45
VPS29-209ENST00000551655 SENP3Q9H4L4 574 aaPredicted RBP24.14■■□□□ 1.45
VPS29-209ENST00000551655 ZNF777Q9ULD5 760 aaPredicted RBP24.14■■□□□ 1.45
VPS29-209ENST00000551655 POLR1AO95602 1720 aaPredicted RBP24.13■■□□□ 1.45
VPS29-209ENST00000551655 CPS1P31327 1500 aa24.12■■□□□ 1.45
VPS29-209ENST00000551655 UBTFP17480 764 aaKnown RBP24.12■■□□□ 1.45
VPS29-209ENST00000551655 SPAG9O60271 1321 aaKnown RBP24.11■■□□□ 1.45
VPS29-209ENST00000551655 ATP7AQ04656 1500 aa24.11■■□□□ 1.45
VPS29-209ENST00000551655 GGT6Q6P531 493 aa24.11■■□□□ 1.45
VPS29-209ENST00000551655 SHANK2Q9UPX8 1470 aa24.11■■□□□ 1.45
VPS29-209ENST00000551655 A2ML1A8K2U0 1454 aa24.1■■□□□ 1.45
VPS29-209ENST00000551655 INO80Q9ULG1 1556 aaPredicted RBP24.09■■□□□ 1.45
VPS29-209ENST00000551655 HNRNPMP52272 730 aaKnown RBP eCLIP24.09■■□□□ 1.45
VPS29-209ENST00000551655 A2MP01023 1474 aa24.08■■□□□ 1.45
VPS29-209ENST00000551655 VWDEQ8N2E2 1590 aa24.05■■□□□ 1.44
VPS29-209ENST00000551655 CCDC18Q5T9S5 1454 aa24.01■■□□□ 1.43
VPS29-209ENST00000551655 GPATCH8Q9UKJ3 1502 aaKnown RBP24■■□□□ 1.43
VPS29-209ENST00000551655 FBXO31Q5XUX0 539 aaPredicted RBP23.98■■□□□ 1.43
VPS29-209ENST00000551655 RGS17Q9UGC6 210 aaPredicted RBP23.98■■□□□ 1.43
VPS29-209ENST00000551655 CASKIN1Q8WXD9 1431 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms