RNA–Protein interactions for RNA: ENST00000542354.1

TRAV1-1-201, Transcript of T cell receptor alpha variable 1-1, humanhuman

APPRIS P1 BASIC

Gene TRAV1-1, Length 392 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1-201ENST00000542354 COLQQ9Y215 455 aaPredicted RBP4.9□□□□□ -1.63
TRAV1-1-201ENST00000542354 KDM6BO15054 1643 aa4.9□□□□□ -1.63
TRAV1-1-201ENST00000542354 HMGXB3Q12766 1538 aa4.89□□□□□ -1.63
TRAV1-1-201ENST00000542354 TRPC6Q9Y210 931 aa4.89□□□□□ -1.63
TRAV1-1-201ENST00000542354 CADPSQ9ULU8 1353 aa4.89□□□□□ -1.63
TRAV1-1-201ENST00000542354 POTEFA5A3E0 1075 aa4.88□□□□□ -1.63
TRAV1-1-201ENST00000542354 PYGBP11216 843 aa4.88□□□□□ -1.63
TRAV1-1-201ENST00000542354 IRX5P78411 483 aaPredicted RBP4.88□□□□□ -1.63
TRAV1-1-201ENST00000542354 CDAN1Q8IWY9 1227 aa4.88□□□□□ -1.63
TRAV1-1-201ENST00000542354 CEP164Q9UPV0 1460 aa4.88□□□□□ -1.63
TRAV1-1-201ENST00000542354 CHRM1P11229 460 aaPredicted RBP4.87□□□□□ -1.63
TRAV1-1-201ENST00000542354 GAPVD1Q14C86 1478 aa4.87□□□□□ -1.63
TRAV1-1-201ENST00000542354 VASPP50552 380 aaPredicted RBP4.86□□□□□ -1.63
TRAV1-1-201ENST00000542354 ZNF608Q9ULD9 1512 aaPredicted RBP4.85□□□□□ -1.63
TRAV1-1-201ENST00000542354 KIF13AQ9H1H9 1805 aa4.85□□□□□ -1.63
TRAV1-1-201ENST00000542354 ST18O60284 1047 aa4.84□□□□□ -1.63
TRAV1-1-201ENST00000542354 BAZ1BQ9UIG0 1483 aaKnown RBP4.83□□□□□ -1.64
TRAV1-1-201ENST00000542354 PDAP1Q13442 181 aaKnown RBP4.83□□□□□ -1.64
TRAV1-1-201ENST00000542354 LCE2DQ5TA82 110 aaPredicted RBP4.83□□□□□ -1.64
TRAV1-1-201ENST00000542354 CHD1O14646 1710 aa4.83□□□□□ -1.64
TRAV1-1-201ENST00000542354 IFT140Q96RY7 1462 aa4.82□□□□□ -1.64
TRAV1-1-201ENST00000542354 RIMBP2O15034 1052 aa4.82□□□□□ -1.64
TRAV1-1-201ENST00000542354 PSEN1P49768 467 aa4.82□□□□□ -1.64
TRAV1-1-201ENST00000542354 SPOCK2Q92563 424 aa4.82□□□□□ -1.64
TRAV1-1-201ENST00000542354 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.82□□□□□ -1.64
TRAV1-1-201ENST00000542354 PCDHB8Q9UN66 801 aa4.82□□□□□ -1.64
TRAV1-1-201ENST00000542354 EMP3P54852 163 aa4.81□□□□□ -1.64
TRAV1-1-201ENST00000542354 ABCC10Q5T3U5 1492 aa4.81□□□□□ -1.64
TRAV1-1-201ENST00000542354 FANCD2Q9BXW9 1451 aa4.81□□□□□ -1.64
TRAV1-1-201ENST00000542354 TOP2BQ02880 1626 aa4.8□□□□□ -1.64
TRAV1-1-201ENST00000542354 TAOK2Q9UL54 1235 aa4.8□□□□□ -1.64
TRAV1-1-201ENST00000542354 DOK7Q18PE1 504 aa4.79□□□□□ -1.64
TRAV1-1-201ENST00000542354 ZNF710Q8N1W2 664 aa4.79□□□□□ -1.64
TRAV1-1-201ENST00000542354 CHMP7Q8WUX9 453 aaPredicted RBP4.79□□□□□ -1.64
TRAV1-1-201ENST00000542354 CIZ1Q9ULV3 898 aaPredicted RBP4.79□□□□□ -1.64
TRAV1-1-201ENST00000542354 SMARCA4P51532 1647 aa4.79□□□□□ -1.64
TRAV1-1-201ENST00000542354 CLASP1Q7Z460 1538 aa4.78□□□□□ -1.64
TRAV1-1-201ENST00000542354 URB2Q14146 1524 aaKnown RBP4.77□□□□□ -1.65
TRAV1-1-201ENST00000542354 DCAF1Q9Y4B6 1507 aa4.77□□□□□ -1.65
TRAV1-1-201ENST00000542354 PDCD7Q8N8D1 485 aaKnown RBP4.77□□□□□ -1.65
TRAV1-1-201ENST00000542354 SYNJ1O43426 1573 aa4.76□□□□□ -1.65
TRAV1-1-201ENST00000542354 BOLA1Q9Y3E2 137 aa4.76□□□□□ -1.65
TRAV1-1-201ENST00000542354 AQRO60306 1485 aaKnown RBP eCLIP4.75□□□□□ -1.65
TRAV1-1-201ENST00000542354 HSPA2P54652 639 aa4.74□□□□□ -1.65
TRAV1-1-201ENST00000542354 MMRN1Q13201 1228 aa4.74□□□□□ -1.65
TRAV1-1-201ENST00000542354 SPNS2Q8IVW8 549 aa4.74□□□□□ -1.65
TRAV1-1-201ENST00000542354 CABP2Q9NPB3 220 aa4.74□□□□□ -1.65
TRAV1-1-201ENST00000542354 EIF4G3O43432 1585 aaKnown RBP4.74□□□□□ -1.65
TRAV1-1-201ENST00000542354 PCF11O94913 1555 aaKnown RBP4.74□□□□□ -1.65
TRAV1-1-201ENST00000542354 MARVELD3Q96A59 401 aa4.73□□□□□ -1.65
TRAV1-1-201ENST00000542354 ZSWIM6Q9HCJ5 1215 aa4.73□□□□□ -1.65
TRAV1-1-201ENST00000542354 SRCAPQ6ZRS2 3230 aa4.73□□□□□ -1.65
TRAV1-1-201ENST00000542354 PTGER2P43116 358 aa4.72□□□□□ -1.65
TRAV1-1-201ENST00000542354 TSPOAP1O95153 1857 aa4.72□□□□□ -1.65
TRAV1-1-201ENST00000542354 FAM205CA6NFA0 338 aa4.71□□□□□ -1.66
TRAV1-1-201ENST00000542354 SOX12O15370 315 aa4.71□□□□□ -1.66
TRAV1-1-201ENST00000542354 HS3ST6Q96QI5 342 aa4.71□□□□□ -1.66
TRAV1-1-201ENST00000542354 ERBB3P21860 1342 aa4.71□□□□□ -1.66
TRAV1-1-201ENST00000542354 MED1Q15648 1581 aaPredicted RBP4.7□□□□□ -1.66
TRAV1-1-201ENST00000542354 DIP2BQ9P265 1576 aa4.7□□□□□ -1.66
TRAV1-1-201ENST00000542354 PTPRMP28827 1452 aa4.69□□□□□ -1.66
TRAV1-1-201ENST00000542354 SNAPC4Q5SXM2 1469 aa4.69□□□□□ -1.66
TRAV1-1-201ENST00000542354 VGFO15240 615 aaPredicted RBP4.69□□□□□ -1.66
TRAV1-1-201ENST00000542354 HOXB1P14653 301 aaPredicted RBP4.69□□□□□ -1.66
TRAV1-1-201ENST00000542354 MAPKBP1O60336 1514 aa4.68□□□□□ -1.66
TRAV1-1-201ENST00000542354 UBAP1LF5GYI3 381 aa4.68□□□□□ -1.66
TRAV1-1-201ENST00000542354 RIOK3O14730 519 aaKnown RBP4.67□□□□□ -1.66
TRAV1-1-201ENST00000542354 IFNLR1Q8IU57 520 aaPredicted RBP4.67□□□□□ -1.66
TRAV1-1-201ENST00000542354 IQSEC2Q5JU85 1478 aa4.66□□□□□ -1.66
TRAV1-1-201ENST00000542354 COL17A1Q9UMD9 1497 aaPredicted RBP4.66□□□□□ -1.66
TRAV1-1-201ENST00000542354 HSPA1LP34931 641 aa4.65□□□□□ -1.67
TRAV1-1-201ENST00000542354 CFTRP13569 1480 aa4.64□□□□□ -1.67
TRAV1-1-201ENST00000542354 ZCCHC6Q5VYS8 1495 aaKnown RBP4.64□□□□□ -1.67
TRAV1-1-201ENST00000542354 NLRP6P59044 892 aa4.64□□□□□ -1.67
TRAV1-1-201ENST00000542354 EFCAB3Q8N7B9 438 aa4.64□□□□□ -1.67
TRAV1-1-201ENST00000542354 RNF166Q96A37 237 aaPredicted RBP4.64□□□□□ -1.67
TRAV1-1-201ENST00000542354 PEG3Q9GZU2 1588 aa4.64□□□□□ -1.67
TRAV1-1-201ENST00000542354 HOXB3P14651 431 aaPredicted RBP4.63□□□□□ -1.67
TRAV1-1-201ENST00000542354 DPY19L2Q6NUT2 758 aa4.63□□□□□ -1.67
TRAV1-1-201ENST00000542354 MICALL2Q8IY33 904 aa4.63□□□□□ -1.67
TRAV1-1-201ENST00000542354 MYT1LQ9UL68 1186 aa4.63□□□□□ -1.67
TRAV1-1-201ENST00000542354 PTPRTO14522 1441 aa4.63□□□□□ -1.67
TRAV1-1-201ENST00000542354 MAGI1Q96QZ7 1491 aaPredicted RBP4.62□□□□□ -1.67
TRAV1-1-201ENST00000542354 VARS2Q5ST30 1063 aaKnown RBP4.62□□□□□ -1.67
TRAV1-1-201ENST00000542354 ZNF687Q8N1G0 1237 aa4.62□□□□□ -1.67
TRAV1-1-201ENST00000542354 KRTAP3-3Q9BYR6 98 aa4.62□□□□□ -1.67
TRAV1-1-201ENST00000542354 KRTAP3-2Q9BYR7 98 aa4.62□□□□□ -1.67
TRAV1-1-201ENST00000542354 TDRD9Q8NDG6 1382 aaKnown RBP4.62□□□□□ -1.67
TRAV1-1-201ENST00000542354 YEATS2Q9ULM3 1422 aa4.62□□□□□ -1.67
TRAV1-1-201ENST00000542354 ABCC8Q09428 1581 aa4.61□□□□□ -1.67
TRAV1-1-201ENST00000542354 LTBP4Q8N2S1 1624 aa4.61□□□□□ -1.67
TRAV1-1-201ENST00000542354 PSDA5PKW4 1024 aaPredicted RBP4.61□□□□□ -1.67
TRAV1-1-201ENST00000542354 PBX2P40425 430 aa4.61□□□□□ -1.67
TRAV1-1-201ENST00000542354 UPF1Q92900 1129 aaKnown RBP eCLIP4.61□□□□□ -1.67
TRAV1-1-201ENST00000542354 RGS17Q9UGC6 210 aaPredicted RBP4.61□□□□□ -1.67
TRAV1-1-201ENST00000542354 TOPBP1Q92547 1522 aa4.61□□□□□ -1.67
TRAV1-1-201ENST00000542354 RBM33Q96EV2 1170 aaKnown RBP4.6□□□□□ -1.67
TRAV1-1-201ENST00000542354 MROH2BQ7Z745 1585 aa4.6□□□□□ -1.67
TRAV1-1-201ENST00000542354 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.59□□□□□ -1.67
TRAV1-1-201ENST00000542354 SLC34A2O95436 690 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms