RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 DNMT1P26358 1616 aaKnown RBP21.09■□□□□ 0.97
CLIP1-216ENST00000541410 GCC2Q8IWJ2 1684 aa21.09■□□□□ 0.97
CLIP1-216ENST00000541410 ITSN2Q9NZM3 1697 aa21.09■□□□□ 0.97
CLIP1-216ENST00000541410 CLASP1Q7Z460 1538 aa21.07■□□□□ 0.96
CLIP1-216ENST00000541410 CDC42BPAQ5VT25 1732 aa21.07■□□□□ 0.96
CLIP1-216ENST00000541410 ABCC10Q5T3U5 1492 aa21.04■□□□□ 0.96
CLIP1-216ENST00000541410 FOXD1Q16676 465 aa21.02■□□□□ 0.96
CLIP1-216ENST00000541410 KCNH8Q96L42 1107 aa21.01■□□□□ 0.95
CLIP1-216ENST00000541410 AKNAQ7Z591 1439 aa21■□□□□ 0.95
CLIP1-216ENST00000541410 ABCC2Q92887 1545 aa20.98■□□□□ 0.95
CLIP1-216ENST00000541410 DENND4BO75064 1496 aaPredicted RBP20.98■□□□□ 0.95
CLIP1-216ENST00000541410 HNRNPMP52272 730 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLIP1-216ENST00000541410 ROCK1Q13464 1354 aa20.97■□□□□ 0.95
CLIP1-216ENST00000541410 MPHOSPH9Q99550 1183 aa20.96■□□□□ 0.95
CLIP1-216ENST00000541410 MIER1Q8N108 512 aa20.95■□□□□ 0.94
CLIP1-216ENST00000541410 TONSLQ96HA7 1378 aa20.94■□□□□ 0.94
CLIP1-216ENST00000541410 CDC42BPBQ9Y5S2 1711 aa20.93■□□□□ 0.94
CLIP1-216ENST00000541410 NCOA1Q15788 1441 aa20.93■□□□□ 0.94
CLIP1-216ENST00000541410 CROCC2H7BZ55 1655 aa20.92■□□□□ 0.94
CLIP1-216ENST00000541410 TTC37Q6PGP7 1564 aa20.92■□□□□ 0.94
CLIP1-216ENST00000541410 PPP1R15AO75807 674 aaPredicted RBP20.92■□□□□ 0.94
CLIP1-216ENST00000541410 HIRIP3Q9BW71 556 aaPredicted RBP20.92■□□□□ 0.94
CLIP1-216ENST00000541410 ADGBQ8N7X0 1667 aa20.9■□□□□ 0.94
CLIP1-216ENST00000541410 ZCCHC11Q5TAX3 1644 aaKnown RBP20.9■□□□□ 0.94
CLIP1-216ENST00000541410 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.89■□□□□ 0.93
CLIP1-216ENST00000541410 SLC4A1APQ9BWU0 796 aaKnown RBP20.88■□□□□ 0.93
CLIP1-216ENST00000541410 TIMELESSQ9UNS1 1208 aa20.87■□□□□ 0.93
CLIP1-216ENST00000541410 PREX2Q70Z35 1606 aa20.87■□□□□ 0.93
CLIP1-216ENST00000541410 SAMD9LQ8IVG5 1584 aa20.87■□□□□ 0.93
CLIP1-216ENST00000541410 ANKRD30AQ9BXX3 1397 aa20.86■□□□□ 0.93
CLIP1-216ENST00000541410 TSPY4P0CV99 314 aa20.86■□□□□ 0.93
CLIP1-216ENST00000541410 TSPY10P0CW01 314 aa20.86■□□□□ 0.93
CLIP1-216ENST00000541410 C9orf84Q5VXU9 1444 aa20.86■□□□□ 0.93
CLIP1-216ENST00000541410 ARHGAP5Q13017 1502 aa20.85■□□□□ 0.93
CLIP1-216ENST00000541410 ADGRL2O95490 1459 aa20.83■□□□□ 0.93
CLIP1-216ENST00000541410 OSCARQ8IYS5 282 aa20.82■□□□□ 0.92
CLIP1-216ENST00000541410 MBD5Q9P267 1494 aa20.82■□□□□ 0.92
CLIP1-216ENST00000541410 ANKRD50Q9ULJ7 1429 aa20.81■□□□□ 0.92
CLIP1-216ENST00000541410 KDM5BQ9UGL1 1544 aa20.81■□□□□ 0.92
CLIP1-216ENST00000541410 MYO5CQ9NQX4 1742 aa20.8■□□□□ 0.92
CLIP1-216ENST00000541410 SYCP2Q9BX26 1530 aa20.8■□□□□ 0.92
CLIP1-216ENST00000541410 UHRF1BP1LA0JNW5 1464 aa20.8■□□□□ 0.92
CLIP1-216ENST00000541410 YTHDC1Q96MU7 727 aaKnown RBP20.8■□□□□ 0.92
CLIP1-216ENST00000541410 PZPP20742 1482 aa20.78■□□□□ 0.92
CLIP1-216ENST00000541410 SHANK2Q9UPX8 1470 aa20.77■□□□□ 0.91
CLIP1-216ENST00000541410 KIF15Q9NS87 1388 aa20.76■□□□□ 0.91
CLIP1-216ENST00000541410 CCDC141Q6ZP82 1450 aa20.76■□□□□ 0.91
CLIP1-216ENST00000541410 ANKRD30BQ9BXX2 1392 aa20.76■□□□□ 0.91
CLIP1-216ENST00000541410 ARHGEF5Q12774 1597 aa20.76■□□□□ 0.91
CLIP1-216ENST00000541410 L3MBTL2Q969R5 705 aa20.74■□□□□ 0.91
CLIP1-216ENST00000541410 PKD2Q13563 968 aa20.74■□□□□ 0.91
CLIP1-216ENST00000541410 NUP155O75694 1391 aa20.73■□□□□ 0.91
CLIP1-216ENST00000541410 ARHGEF12Q9NZN5 1544 aa20.71■□□□□ 0.91
CLIP1-216ENST00000541410 DDX10Q13206 875 aaKnown RBP20.71■□□□□ 0.91
CLIP1-216ENST00000541410 PLCH2O75038 1416 aa20.7■□□□□ 0.9
CLIP1-216ENST00000541410 EFCAB2Q5VUJ9 269 aa20.68■□□□□ 0.9
CLIP1-216ENST00000541410 RSPH4AQ5TD94 716 aa20.67■□□□□ 0.9
CLIP1-216ENST00000541410 RPRD2Q5VT52 1461 aaKnown RBP20.67■□□□□ 0.9
CLIP1-216ENST00000541410 ACIN1Q9UKV3 1341 aaKnown RBP20.66■□□□□ 0.9
CLIP1-216ENST00000541410 WDR7Q9Y4E6 1490 aa20.66■□□□□ 0.9
CLIP1-216ENST00000541410 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.65■□□□□ 0.91e-7■□□□□ 10.1
CLIP1-216ENST00000541410 KIAA1107Q9UPP5 1409 aa20.65■□□□□ 0.9
CLIP1-216ENST00000541410 TRAPPC8Q9Y2L5 1435 aa20.63■□□□□ 0.89
CLIP1-216ENST00000541410 AFAP1Q8N556 730 aa20.63■□□□□ 0.89
CLIP1-216ENST00000541410 ASXL2Q76L83 1435 aa20.62■□□□□ 0.89
CLIP1-216ENST00000541410 NBPF8Q3BBV2 869 aa20.62■□□□□ 0.89
CLIP1-216ENST00000541410 PLEKHH2Q8IVE3 1493 aa20.6■□□□□ 0.89
CLIP1-216ENST00000541410 TEX14Q8IWB6 1497 aa20.6■□□□□ 0.89
CLIP1-216ENST00000541410 ABCC1P33527 1531 aa20.59■□□□□ 0.89
CLIP1-216ENST00000541410 ZNF326Q5BKZ1 582 aaKnown RBP20.59■□□□□ 0.89
CLIP1-216ENST00000541410 NPM1P06748 294 aaKnown RBP eCLIP20.58■□□□□ 0.89
CLIP1-216ENST00000541410 MAST1Q9Y2H9 1570 aa20.57■□□□□ 0.88
CLIP1-216ENST00000541410 HSPA5P11021 654 aaKnown RBP20.57■□□□□ 0.88
CLIP1-216ENST00000541410 CENPBP07199 599 aaPredicted RBP20.56■□□□□ 0.88
CLIP1-216ENST00000541410 FANCAO15360 1455 aa20.55■□□□□ 0.88
CLIP1-216ENST00000541410 FAM135AQ9P2D6 1515 aa20.54■□□□□ 0.88
CLIP1-216ENST00000541410 MYT1LQ9UL68 1186 aa20.54■□□□□ 0.88
CLIP1-216ENST00000541410 KDM5DQ9BY66 1539 aa20.53■□□□□ 0.88
CLIP1-216ENST00000541410 SPAG9O60271 1321 aaKnown RBP20.53■□□□□ 0.88
CLIP1-216ENST00000541410 SCAF1Q9H7N4 1312 aaKnown RBP20.53■□□□□ 0.88
CLIP1-216ENST00000541410 ABCA9Q8IUA7 1624 aa20.53■□□□□ 0.88
CLIP1-216ENST00000541410 PLXNC1O60486 1568 aa20.53■□□□□ 0.88
CLIP1-216ENST00000541410 EIF4G2P78344 907 aaKnown RBP eCLIP20.51■□□□□ 0.87
CLIP1-216ENST00000541410 KDM2AQ9Y2K7 1162 aa20.49■□□□□ 0.87
CLIP1-216ENST00000541410 DUOX2Q9NRD8 1548 aa20.48■□□□□ 0.87
CLIP1-216ENST00000541410 SCAPERQ9BY12 1400 aa20.47■□□□□ 0.87
CLIP1-216ENST00000541410 ADGRL1O94910 1474 aa20.47■□□□□ 0.87
CLIP1-216ENST00000541410 ARAP3Q8WWN8 1544 aa20.47■□□□□ 0.87
CLIP1-216ENST00000541410 UNC13BO14795 1591 aa20.46■□□□□ 0.87
CLIP1-216ENST00000541410 CYB5RLQ6IPT4 315 aa20.46■□□□□ 0.87
CLIP1-216ENST00000541410 WASHC2AQ641Q2 1341 aa20.44■□□□□ 0.86
CLIP1-216ENST00000541410 ZFYVE16Q7Z3T8 1539 aa20.44■□□□□ 0.86
CLIP1-216ENST00000541410 C11orf95C9JLR9 678 aaPredicted RBP20.43■□□□□ 0.86
CLIP1-216ENST00000541410 RGL3Q3MIN7 710 aa20.43■□□□□ 0.86
CLIP1-216ENST00000541410 DCAF11Q8TEB1 546 aa20.43■□□□□ 0.86
CLIP1-216ENST00000541410 ERBINQ96RT1 1412 aa20.42■□□□□ 0.86
CLIP1-216ENST00000541410 IQGAP3Q86VI3 1631 aa20.4■□□□□ 0.86
CLIP1-216ENST00000541410 ATP7AQ04656 1500 aa20.4■□□□□ 0.86
CLIP1-216ENST00000541410 CD109Q6YHK3 1445 aa20.39■□□□□ 0.86
CLIP1-216ENST00000541410 PLA2R1Q13018 1463 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 153.2 ms