RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 TTC37Q6PGP7 1564 aa20.77■□□□□ 0.92
SFSWAP-210ENST00000541286 SUPT6HQ7KZ85 1726 aaKnown RBP20.76■□□□□ 0.91
SFSWAP-210ENST00000541286 FAM69CQ0P6D2 419 aa20.76■□□□□ 0.91
SFSWAP-210ENST00000541286 FGD6Q6ZV73 1430 aa20.75■□□□□ 0.91
SFSWAP-210ENST00000541286 MYOM3Q5VTT5 1437 aa20.74■□□□□ 0.91
SFSWAP-210ENST00000541286 RRP7BPQ9NSQ0 103 aa20.74■□□□□ 0.91
SFSWAP-210ENST00000541286 GPATCH8Q9UKJ3 1502 aaKnown RBP20.73■□□□□ 0.91
SFSWAP-210ENST00000541286 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.73■□□□□ 0.916e-7■□□□□ 10.6
SFSWAP-210ENST00000541286 WDR7Q9Y4E6 1490 aa20.72■□□□□ 0.91
SFSWAP-210ENST00000541286 PTPRKQ15262 1439 aa20.72■□□□□ 0.91
SFSWAP-210ENST00000541286 TRHP20396 242 aaPredicted RBP20.72■□□□□ 0.91
SFSWAP-210ENST00000541286 ABCC10Q5T3U5 1492 aa20.7■□□□□ 0.9
SFSWAP-210ENST00000541286 BCANQ96GW7 911 aa20.68■□□□□ 0.9
SFSWAP-210ENST00000541286 RRBP1Q9P2E9 1410 aaKnown RBP20.68■□□□□ 0.9
SFSWAP-210ENST00000541286 AFAP1Q8N556 730 aa20.66■□□□□ 0.9
SFSWAP-210ENST00000541286 SUPT16HQ9Y5B9 1047 aaKnown RBP20.65■□□□□ 0.9
SFSWAP-210ENST00000541286 CDC42BPAQ5VT25 1732 aa20.64■□□□□ 0.89
SFSWAP-210ENST00000541286 TSPOAP1O95153 1857 aa20.64■□□□□ 0.89
SFSWAP-210ENST00000541286 ARHGAP5Q13017 1502 aa20.63■□□□□ 0.89
SFSWAP-210ENST00000541286 PTPN23Q9H3S7 1636 aa20.63■□□□□ 0.89
SFSWAP-210ENST00000541286 MYT1LQ9UL68 1186 aa20.61■□□□□ 0.89
SFSWAP-210ENST00000541286 RAPGEF3O95398 923 aa20.61■□□□□ 0.89
SFSWAP-210ENST00000541286 ANP32EQ9BTT0 268 aa20.6■□□□□ 0.89
SFSWAP-210ENST00000541286 CDC42BPBQ9Y5S2 1711 aa20.6■□□□□ 0.89
SFSWAP-210ENST00000541286 TSHZ2Q9NRE2 1034 aa20.59■□□□□ 0.89
SFSWAP-210ENST00000541286 CAMSAP2Q08AD1 1489 aa20.59■□□□□ 0.89
SFSWAP-210ENST00000541286 CD109Q6YHK3 1445 aa20.58■□□□□ 0.88
SFSWAP-210ENST00000541286 ARHGEF12Q9NZN5 1544 aa20.56■□□□□ 0.88
SFSWAP-210ENST00000541286 EFCAB2Q5VUJ9 269 aa20.54■□□□□ 0.88
SFSWAP-210ENST00000541286 SAMD9LQ8IVG5 1584 aa20.53■□□□□ 0.88
SFSWAP-210ENST00000541286 SYCP2Q9BX26 1530 aa20.53■□□□□ 0.88
SFSWAP-210ENST00000541286 ABCC5O15440 1437 aa20.53■□□□□ 0.88
SFSWAP-210ENST00000541286 PLCH2O75038 1416 aa20.52■□□□□ 0.88
SFSWAP-210ENST00000541286 TRAPPC8Q9Y2L5 1435 aa20.52■□□□□ 0.88
SFSWAP-210ENST00000541286 FANCAO15360 1455 aa20.51■□□□□ 0.87
SFSWAP-210ENST00000541286 DHX57Q6P158 1386 aaKnown RBP20.5■□□□□ 0.87
SFSWAP-210ENST00000541286 MYO5CQ9NQX4 1742 aa20.49■□□□□ 0.87
SFSWAP-210ENST00000541286 PREX2Q70Z35 1606 aa20.48■□□□□ 0.87
SFSWAP-210ENST00000541286 DAPK1P53355 1430 aa20.48■□□□□ 0.87
SFSWAP-210ENST00000541286 MIA2Q96PC5 1412 aa20.47■□□□□ 0.87
SFSWAP-210ENST00000541286 MAPKBP1O60336 1514 aa20.47■□□□□ 0.87
SFSWAP-210ENST00000541286 SCAPERQ9BY12 1400 aa20.47■□□□□ 0.87
SFSWAP-210ENST00000541286 RAB3GAP2Q9H2M9 1393 aa20.46■□□□□ 0.87
SFSWAP-210ENST00000541286 DIP2BQ9P265 1576 aa20.46■□□□□ 0.87
SFSWAP-210ENST00000541286 FOXD1Q16676 465 aa20.46■□□□□ 0.87
SFSWAP-210ENST00000541286 ABCA9Q8IUA7 1624 aa20.45■□□□□ 0.86
SFSWAP-210ENST00000541286 KDM6BO15054 1643 aa20.45■□□□□ 0.86
SFSWAP-210ENST00000541286 MBD5Q9P267 1494 aa20.44■□□□□ 0.86
SFSWAP-210ENST00000541286 TSPY4P0CV99 314 aa20.44■□□□□ 0.86
SFSWAP-210ENST00000541286 TSPY10P0CW01 314 aa20.44■□□□□ 0.86
SFSWAP-210ENST00000541286 ITSN2Q9NZM3 1697 aa20.44■□□□□ 0.86
SFSWAP-210ENST00000541286 TCOF1Q13428 1488 aaKnown RBP20.44■□□□□ 0.86
SFSWAP-210ENST00000541286 ADGRL1O94910 1474 aa20.42■□□□□ 0.86
SFSWAP-210ENST00000541286 TRIM52Q96A61 297 aa20.42■□□□□ 0.86
SFSWAP-210ENST00000541286 AKNAQ7Z591 1439 aa20.42■□□□□ 0.86
SFSWAP-210ENST00000541286 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.41■□□□□ 0.868e-7■■■□□ 16.7
SFSWAP-210ENST00000541286 KIF13AQ9H1H9 1805 aa20.41■□□□□ 0.86
SFSWAP-210ENST00000541286 COL17A1Q9UMD9 1497 aaPredicted RBP20.39■□□□□ 0.85
SFSWAP-210ENST00000541286 C9orf84Q5VXU9 1444 aa20.38■□□□□ 0.85
SFSWAP-210ENST00000541286 HIRIP3Q9BW71 556 aaPredicted RBP20.37■□□□□ 0.85
SFSWAP-210ENST00000541286 NAIPQ13075 1403 aa20.37■□□□□ 0.85
SFSWAP-210ENST00000541286 SPAG9O60271 1321 aaKnown RBP20.36■□□□□ 0.85
SFSWAP-210ENST00000541286 DNMT1P26358 1616 aaKnown RBP20.35■□□□□ 0.85
SFSWAP-210ENST00000541286 SETD5Q9C0A6 1442 aa20.35■□□□□ 0.85
SFSWAP-210ENST00000541286 SIN3AQ96ST3 1273 aa20.33■□□□□ 0.85
SFSWAP-210ENST00000541286 ABCC1P33527 1531 aa20.33■□□□□ 0.85
SFSWAP-210ENST00000541286 NCOA1Q15788 1441 aa20.33■□□□□ 0.84
SFSWAP-210ENST00000541286 MAP3K4Q9Y6R4 1608 aa20.32■□□□□ 0.84
SFSWAP-210ENST00000541286 CCDC141Q6ZP82 1450 aa20.32■□□□□ 0.84
SFSWAP-210ENST00000541286 KIF15Q9NS87 1388 aa20.31■□□□□ 0.84
SFSWAP-210ENST00000541286 PPRC1Q5VV67 1664 aaKnown RBP20.3■□□□□ 0.84
SFSWAP-210ENST00000541286 CLSPNQ9HAW4 1339 aa20.3■□□□□ 0.84
SFSWAP-210ENST00000541286 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.3■□□□□ 0.84
SFSWAP-210ENST00000541286 DDX10Q13206 875 aaKnown RBP20.29■□□□□ 0.84
SFSWAP-210ENST00000541286 MLECQ14165 292 aa20.29■□□□□ 0.84
SFSWAP-210ENST00000541286 YEATS2Q9ULM3 1422 aa20.28■□□□□ 0.84
SFSWAP-210ENST00000541286 FKBP8Q14318 412 aa20.27■□□□□ 0.84
SFSWAP-210ENST00000541286 HFM1A2PYH4 1435 aa20.27■□□□□ 0.84
SFSWAP-210ENST00000541286 ANKRD30AQ9BXX3 1397 aa20.25■□□□□ 0.83
SFSWAP-210ENST00000541286 PLPPR3Q6T4P5 718 aa20.25■□□□□ 0.83
SFSWAP-210ENST00000541286 PLEKHH2Q8IVE3 1493 aa20.25■□□□□ 0.83
SFSWAP-210ENST00000541286 KIF3BO15066 747 aa20.24■□□□□ 0.83
SFSWAP-210ENST00000541286 GGT6Q6P531 493 aa20.24■□□□□ 0.83
SFSWAP-210ENST00000541286 KIAA1107Q9UPP5 1409 aa20.23■□□□□ 0.83
SFSWAP-210ENST00000541286 ANKRD50Q9ULJ7 1429 aa20.23■□□□□ 0.83
SFSWAP-210ENST00000541286 GLI2P10070 1586 aa20.21■□□□□ 0.83
SFSWAP-210ENST00000541286 POGZQ7Z3K3 1410 aa20.21■□□□□ 0.83
SFSWAP-210ENST00000541286 CROCC2H7BZ55 1655 aa20.21■□□□□ 0.83
SFSWAP-210ENST00000541286 DENND4BO75064 1496 aaPredicted RBP20.21■□□□□ 0.83
SFSWAP-210ENST00000541286 SLC4A1APQ9BWU0 796 aaKnown RBP20.19■□□□□ 0.82
SFSWAP-210ENST00000541286 ARHGEF5Q12774 1597 aa20.18■□□□□ 0.82
SFSWAP-210ENST00000541286 NUP155O75694 1391 aa20.17■□□□□ 0.82
SFSWAP-210ENST00000541286 ZFYVE16Q7Z3T8 1539 aa20.16■□□□□ 0.82
SFSWAP-210ENST00000541286 MPHOSPH9Q99550 1183 aa20.16■□□□□ 0.82
SFSWAP-210ENST00000541286 SENP3Q9H4L4 574 aaPredicted RBP20.16■□□□□ 0.82
SFSWAP-210ENST00000541286 ZNF518AQ6AHZ1 1483 aa20.16■□□□□ 0.82
SFSWAP-210ENST00000541286 ATP7AQ04656 1500 aa20.15■□□□□ 0.82
SFSWAP-210ENST00000541286 KIDINS220Q9ULH0 1771 aa20.15■□□□□ 0.82
SFSWAP-210ENST00000541286 RSPH4AQ5TD94 716 aa20.15■□□□□ 0.82
SFSWAP-210ENST00000541286 ARAP3Q8WWN8 1544 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms