RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-205ENST00000536107 ARSIQ5FYB1 569 aa10.82□□□□□ -0.68
YBX3-205ENST00000536107 ZNF316A6NFI3 1004 aaPredicted RBP10.8□□□□□ -0.68
YBX3-205ENST00000536107 MS4A4AQ96JQ5 239 aa10.8□□□□□ -0.68
YBX3-205ENST00000536107 LSM11P83369 360 aaKnown RBP eCLIP10.79□□□□□ -0.68
YBX3-205ENST00000536107 KHSRPQ92945 711 aaKnown RBP eCLIP10.74□□□□□ -0.69
YBX3-205ENST00000536107 PHF8Q9UPP1 1060 aa10.74□□□□□ -0.69
YBX3-205ENST00000536107 PBX2P40425 430 aa10.72□□□□□ -0.69
YBX3-205ENST00000536107 RIOK3O14730 519 aaKnown RBP10.71□□□□□ -0.69
YBX3-205ENST00000536107 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.7□□□□□ -0.7
YBX3-205ENST00000536107 ZFP91Q96JP5 570 aaPredicted RBP10.7□□□□□ -0.7
YBX3-205ENST00000536107 VGFO15240 615 aaPredicted RBP10.68□□□□□ -0.7
YBX3-205ENST00000536107 PLA2G2EQ9NZK7 142 aa10.68□□□□□ -0.7
YBX3-205ENST00000536107 RNF25Q96BH1 459 aaPredicted RBP10.67□□□□□ -0.7
YBX3-205ENST00000536107 HCSTQ9UBK5 93 aa10.66□□□□□ -0.7
YBX3-205ENST00000536107 NLRP6P59044 892 aa10.65□□□□□ -0.7
YBX3-205ENST00000536107 POTEEQ6S8J3 1075 aa10.64□□□□□ -0.71
YBX3-205ENST00000536107 KIF3CO14782 793 aa10.63□□□□□ -0.71
YBX3-205ENST00000536107 NUDT7P0C024 238 aa10.63□□□□□ -0.71
YBX3-205ENST00000536107 FBXO22Q8NEZ5 403 aa10.62□□□□□ -0.71
YBX3-205ENST00000536107 LHX6Q9UPM6 363 aa10.61□□□□□ -0.71
YBX3-205ENST00000536107 AXIN2Q9Y2T1 843 aa10.61□□□□□ -0.71
YBX3-205ENST00000536107 SLC34A2O95436 690 aa10.6□□□□□ -0.71
YBX3-205ENST00000536107 C2orf72A6NCS6 295 aa10.59□□□□□ -0.71
YBX3-205ENST00000536107 PCDHGA4Q9Y5G9 962 aa10.57□□□□□ -0.72
YBX3-205ENST00000536107 ADGRD1Q6QNK2 874 aa10.56□□□□□ -0.72
YBX3-205ENST00000536107 ARHGAP33O14559 1287 aa10.54□□□□□ -0.72
YBX3-205ENST00000536107 PSDA5PKW4 1024 aaPredicted RBP10.52□□□□□ -0.73
YBX3-205ENST00000536107 MFRPQ9BY79 579 aa10.52□□□□□ -0.73
YBX3-205ENST00000536107 BCL11BQ9C0K0 894 aaPredicted RBP10.52□□□□□ -0.73
YBX3-205ENST00000536107 TAOK2Q9UL54 1235 aa10.52□□□□□ -0.73
YBX3-205ENST00000536107 TK2O00142 265 aa10.51□□□□□ -0.73
YBX3-205ENST00000536107 HRO43593 1189 aa10.49□□□□□ -0.73
YBX3-205ENST00000536107 TMC2Q8TDI7 906 aa10.47□□□□□ -0.73
YBX3-205ENST00000536107 STK24Q9Y6E0 443 aa10.47□□□□□ -0.73
YBX3-205ENST00000536107 KDM4FA0A1W2PPD8 638 aa10.44□□□□□ -0.74
YBX3-205ENST00000536107 DMRTA1Q5VZB9 504 aa10.43□□□□□ -0.74
YBX3-205ENST00000536107 RGS20O76081 388 aa10.4□□□□□ -0.74
YBX3-205ENST00000536107 PSEN2P49810 448 aa10.4□□□□□ -0.74
YBX3-205ENST00000536107 KCTD12Q96CX2 325 aaKnown RBP10.4□□□□□ -0.74
YBX3-205ENST00000536107 STK25O00506 426 aa10.39□□□□□ -0.75
YBX3-205ENST00000536107 PTCD2Q8WV60 388 aaKnown RBP10.39□□□□□ -0.75
YBX3-205ENST00000536107 PPP4R3BQ5MIZ7 849 aa10.36□□□□□ -0.75
YBX3-205ENST00000536107 IFFO2Q5TF58 517 aa10.36□□□□□ -0.75
YBX3-205ENST00000536107 STAC3Q96MF2 364 aa10.36□□□□□ -0.75
YBX3-205ENST00000536107 FOXK1P85037 733 aa10.3□□□□□ -0.76
YBX3-205ENST00000536107 KCNH8Q96L42 1107 aa10.3□□□□□ -0.76
YBX3-205ENST00000536107 IRX2Q9BZI1 471 aaPredicted RBP10.3□□□□□ -0.76
YBX3-205ENST00000536107 PPP1R37O75864 691 aa10.28□□□□□ -0.76
YBX3-205ENST00000536107 VPS9D1Q9Y2B5 631 aa10.28□□□□□ -0.76
YBX3-205ENST00000536107 TBC1D12O60347 775 aa10.27□□□□□ -0.77
YBX3-205ENST00000536107 PTPN5P54829 565 aa10.27□□□□□ -0.77
YBX3-205ENST00000536107 PLPP6Q8IY26 295 aa10.27□□□□□ -0.77
YBX3-205ENST00000536107 KCNK17Q96T54 332 aa10.27□□□□□ -0.77
YBX3-205ENST00000536107 A0A0G2JS52 829 aa10.25□□□□□ -0.77
YBX3-205ENST00000536107 SLC4A5Q9BY07 1137 aa10.25□□□□□ -0.77
YBX3-205ENST00000536107 GPHNQ9NQX3 736 aaPredicted RBP10.23□□□□□ -0.77
YBX3-205ENST00000536107 THSD4Q6ZMP0 1018 aa10.22□□□□□ -0.77
YBX3-205ENST00000536107 ECM2O94769 699 aaPredicted RBP10.21□□□□□ -0.77
YBX3-205ENST00000536107 BHMG1C9JSJ3 638 aaPredicted RBP10.2□□□□□ -0.78
YBX3-205ENST00000536107 DSG2Q14126 1118 aa10.19□□□□□ -0.78
YBX3-205ENST00000536107 BCL2L12Q9HB09 334 aa10.19□□□□□ -0.78
YBX3-205ENST00000536107 RGL2O15211 777 aa10.15□□□□□ -0.78
YBX3-205ENST00000536107 OXER1Q8TDS5 423 aa10.15□□□□□ -0.78
YBX3-205ENST00000536107 WNT2BQ93097 391 aa10.15□□□□□ -0.78
YBX3-205ENST00000536107 GOLGA8CPA6NN73 597 aa10.14□□□□□ -0.79
YBX3-205ENST00000536107 ZNF454Q8N9F8 522 aa10.14□□□□□ -0.79
YBX3-205ENST00000536107 PTPREP23469 700 aa10.12□□□□□ -0.79
YBX3-205ENST00000536107 MRPL50Q8N5N7 158 aaKnown RBP10.12□□□□□ -0.79
YBX3-205ENST00000536107 ZBED2Q9BTP6 218 aa10.12□□□□□ -0.79
YBX3-205ENST00000536107 FOSBP53539 338 aa10.1□□□□□ -0.79
YBX3-205ENST00000536107 PKD2Q13563 968 aa10.09□□□□□ -0.79
YBX3-205ENST00000536107 NBPF3Q9H094 633 aa10.08□□□□□ -0.8
YBX3-205ENST00000536107 UPF1Q92900 1129 aaKnown RBP eCLIP10.07□□□□□ -0.8
YBX3-205ENST00000536107 ITGBL1O95965 494 aaPredicted RBP10.06□□□□□ -0.8
YBX3-205ENST00000536107 NISCHQ9Y2I1 1504 aa10.05□□□□□ -0.8
YBX3-205ENST00000536107 Q6ZNB5 142 aa10.04□□□□□ -0.8
YBX3-205ENST00000536107 ANO8Q9HCE9 1232 aaPredicted RBP10.04□□□□□ -0.8
YBX3-205ENST00000536107 JPH4Q96JJ6 628 aa10.03□□□□□ -0.8
YBX3-205ENST00000536107 ZDHHC16Q969W1 377 aa10.01□□□□□ -0.81
YBX3-205ENST00000536107 ADAM33Q9BZ11 813 aa10□□□□□ -0.81
YBX3-205ENST00000536107 CRISPLD2Q9H0B8 497 aa10□□□□□ -0.81
YBX3-205ENST00000536107 ABCC9O60706 1549 aa10□□□□□ -0.81
YBX3-205ENST00000536107 HS6ST3Q8IZP7 471 aa9.99□□□□□ -0.81
YBX3-205ENST00000536107 PPP1R15BQ5SWA1 713 aa9.98□□□□□ -0.81
YBX3-205ENST00000536107 ANKK1Q8NFD2 765 aa9.98□□□□□ -0.81
YBX3-205ENST00000536107 RABGEF1Q9UJ41 708 aa9.97□□□□□ -0.81
YBX3-205ENST00000536107 EVI5O60447 810 aa9.96□□□□□ -0.82
YBX3-205ENST00000536107 NYAP1Q6ZVC0 841 aa9.96□□□□□ -0.82
YBX3-205ENST00000536107 PPP1R3GB7ZBB8 358 aa9.95□□□□□ -0.82
YBX3-205ENST00000536107 LAPTM4AQ15012 233 aa9.95□□□□□ -0.82
YBX3-205ENST00000536107 LAPTM4BQ86VI4 370 aa9.93□□□□□ -0.82
YBX3-205ENST00000536107 SOWAHBA6NEL2 793 aa9.92□□□□□ -0.82
YBX3-205ENST00000536107 BCAMP50895 628 aa9.91□□□□□ -0.82
YBX3-205ENST00000536107 KCNC4Q03721 635 aa9.91□□□□□ -0.82
YBX3-205ENST00000536107 PROX2Q3B8N5 592 aa9.9□□□□□ -0.82
YBX3-205ENST00000536107 PDE4AP27815 886 aa9.89□□□□□ -0.83
YBX3-205ENST00000536107 RYDENQ9NUL5 291 aaKnown RBP9.88□□□□□ -0.83
YBX3-205ENST00000536107 NCKAP5LQ9HCH0 1330 aa9.87□□□□□ -0.83
YBX3-205ENST00000536107 LCE2BO14633 110 aa9.87□□□□□ -0.83
YBX3-205ENST00000536107 ZFRQ96KR1 1074 aaKnown RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms