RNA–Protein interactions for RNA: ENST00000534830.5

CLSTN3-203, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-203ENST00000534830 PLEKHD1A6NEE1 506 aa16.73■□□□□ 0.27
CLSTN3-203ENST00000534830 ZMYM4Q5VZL5 1548 aa16.73■□□□□ 0.27
CLSTN3-203ENST00000534830 PREX1Q8TCU6 1659 aa16.72■□□□□ 0.27
CLSTN3-203ENST00000534830 RANGAP1P46060 587 aaPredicted RBP16.71■□□□□ 0.27
CLSTN3-203ENST00000534830 CEBPAP49715 358 aaPredicted RBP16.71■□□□□ 0.27
CLSTN3-203ENST00000534830 MAGI2Q86UL8 1455 aa16.7■□□□□ 0.26
CLSTN3-203ENST00000534830 STRCQ7RTU9 1775 aa16.69■□□□□ 0.26
CLSTN3-203ENST00000534830 HECW1Q76N89 1606 aa16.69■□□□□ 0.26
CLSTN3-203ENST00000534830 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.68■□□□□ 0.26
CLSTN3-203ENST00000534830 ARHGEF12Q9NZN5 1544 aa16.65■□□□□ 0.26
CLSTN3-203ENST00000534830 UBTFP17480 764 aaKnown RBP16.65■□□□□ 0.26
CLSTN3-203ENST00000534830 UHRF1BP1Q6BDS2 1440 aa16.64■□□□□ 0.25
CLSTN3-203ENST00000534830 SCAPERQ9BY12 1400 aa16.64■□□□□ 0.25
CLSTN3-203ENST00000534830 ARHGAP35Q9NRY4 1499 aa16.64■□□□□ 0.25
CLSTN3-203ENST00000534830 ATP10AO60312 1499 aa16.63■□□□□ 0.25
CLSTN3-203ENST00000534830 C9orf84Q5VXU9 1444 aa16.62■□□□□ 0.25
CLSTN3-203ENST00000534830 SETD1BQ9UPS6 1966 aaKnown RBP16.62■□□□□ 0.25
CLSTN3-203ENST00000534830 EHMT2Q96KQ7 1210 aa16.61■□□□□ 0.25
CLSTN3-203ENST00000534830 PTPRTO14522 1441 aa16.6■□□□□ 0.25
CLSTN3-203ENST00000534830 FMN1Q68DA7 1419 aa16.59■□□□□ 0.25
CLSTN3-203ENST00000534830 CDK13Q14004 1512 aaKnown RBP16.58■□□□□ 0.24
CLSTN3-203ENST00000534830 MYT1LQ9UL68 1186 aa16.57■□□□□ 0.24
CLSTN3-203ENST00000534830 PLCH2O75038 1416 aa16.56■□□□□ 0.24
CLSTN3-203ENST00000534830 LTBP4Q8N2S1 1624 aa16.55■□□□□ 0.24
CLSTN3-203ENST00000534830 LRRIQ1Q96JM4 1722 aa16.53■□□□□ 0.24
CLSTN3-203ENST00000534830 EFCAB2Q5VUJ9 269 aa16.53■□□□□ 0.24
CLSTN3-203ENST00000534830 IQSEC2Q5JU85 1478 aa16.53■□□□□ 0.24
CLSTN3-203ENST00000534830 ESF1Q9H501 851 aaKnown RBP16.52■□□□□ 0.24
CLSTN3-203ENST00000534830 C3P01024 1663 aa16.51■□□□□ 0.23
CLSTN3-203ENST00000534830 AFAP1Q8N556 730 aa16.5■□□□□ 0.23
CLSTN3-203ENST00000534830 MYO5CQ9NQX4 1742 aa16.5■□□□□ 0.23
CLSTN3-203ENST00000534830 ZNF518AQ6AHZ1 1483 aa16.49■□□□□ 0.23
CLSTN3-203ENST00000534830 UBAP1LF5GYI3 381 aa16.49■□□□□ 0.23
CLSTN3-203ENST00000534830 ATP1B4Q9UN42 357 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-203ENST00000534830 NCOA1Q15788 1441 aa16.47■□□□□ 0.23
CLSTN3-203ENST00000534830 TRAPPC8Q9Y2L5 1435 aa16.47■□□□□ 0.23
CLSTN3-203ENST00000534830 CDK11AQ9UQ88 783 aaPredicted RBP16.45■□□□□ 0.22
CLSTN3-203ENST00000534830 DIP2CQ9Y2E4 1556 aa16.45■□□□□ 0.22
CLSTN3-203ENST00000534830 KIF14Q15058 1648 aa16.45■□□□□ 0.22
CLSTN3-203ENST00000534830 TROQ12816 1431 aaPredicted RBP16.45■□□□□ 0.22
CLSTN3-203ENST00000534830 CASKIN1Q8WXD9 1431 aa16.45■□□□□ 0.22
CLSTN3-203ENST00000534830 KDM5CP41229 1560 aa16.44■□□□□ 0.22
CLSTN3-203ENST00000534830 ARHGAP5Q13017 1502 aa16.44■□□□□ 0.22
CLSTN3-203ENST00000534830 ZNF335Q9H4Z2 1342 aaPredicted RBP16.44■□□□□ 0.22
CLSTN3-203ENST00000534830 CAMSAP1Q5T5Y3 1602 aa16.42■□□□□ 0.22
CLSTN3-203ENST00000534830 NCKAP5LQ9HCH0 1330 aa16.42■□□□□ 0.22
CLSTN3-203ENST00000534830 ABCA6Q8N139 1617 aa16.41■□□□□ 0.22
CLSTN3-203ENST00000534830 REREQ9P2R6 1566 aa16.41■□□□□ 0.22
CLSTN3-203ENST00000534830 CCDC18Q5T9S5 1454 aa16.4■□□□□ 0.22
CLSTN3-203ENST00000534830 CDC42BPBQ9Y5S2 1711 aa16.39■□□□□ 0.21
CLSTN3-203ENST00000534830 CNTLNQ9NXG0 1405 aa16.38■□□□□ 0.21
CLSTN3-203ENST00000534830 AGLP35573 1532 aa16.38■□□□□ 0.21
CLSTN3-203ENST00000534830 SCAF1Q9H7N4 1312 aaKnown RBP16.38■□□□□ 0.21
CLSTN3-203ENST00000534830 CLIP1P30622 1438 aa16.37■□□□□ 0.21
CLSTN3-203ENST00000534830 FYCO1Q9BQS8 1478 aa16.37■□□□□ 0.21
CLSTN3-203ENST00000534830 MLH3Q9UHC1 1453 aa16.37■□□□□ 0.21
CLSTN3-203ENST00000534830 MED1Q15648 1581 aaPredicted RBP16.34■□□□□ 0.21
CLSTN3-203ENST00000534830 HSPA1LP34931 641 aa16.34■□□□□ 0.21
CLSTN3-203ENST00000534830 NPATQ14207 1427 aa16.34■□□□□ 0.21
CLSTN3-203ENST00000534830 PIP4K2BP78356 416 aa16.33■□□□□ 0.2
CLSTN3-203ENST00000534830 PKD2Q13563 968 aa16.33■□□□□ 0.2
CLSTN3-203ENST00000534830 ZMYM3Q14202 1370 aa16.32■□□□□ 0.2
CLSTN3-203ENST00000534830 PREX2Q70Z35 1606 aa16.32■□□□□ 0.2
CLSTN3-203ENST00000534830 CDC42BPAQ5VT25 1732 aa16.31■□□□□ 0.2
CLSTN3-203ENST00000534830 SUPT6HQ7KZ85 1726 aaKnown RBP16.31■□□□□ 0.2
CLSTN3-203ENST00000534830 KIDINS220Q9ULH0 1771 aa16.3■□□□□ 0.2
CLSTN3-203ENST00000534830 MROH2AA6NES4 1674 aa16.3■□□□□ 0.2
CLSTN3-203ENST00000534830 PHF23Q9BUL5 403 aaPredicted RBP16.29■□□□□ 0.2
CLSTN3-203ENST00000534830 PPP6R1Q9UPN7 881 aa16.29■□□□□ 0.2
CLSTN3-203ENST00000534830 ABCC1P33527 1531 aa16.29■□□□□ 0.2
CLSTN3-203ENST00000534830 ITSN2Q9NZM3 1697 aa16.28■□□□□ 0.2
CLSTN3-203ENST00000534830 PLA2R1Q13018 1463 aa16.28■□□□□ 0.2
CLSTN3-203ENST00000534830 TOM1O60784 492 aa16.27■□□□□ 0.2
CLSTN3-203ENST00000534830 MYO3AQ8NEV4 1616 aa16.27■□□□□ 0.19
CLSTN3-203ENST00000534830 CEP170BQ9Y4F5 1589 aaPredicted RBP16.26■□□□□ 0.19
CLSTN3-203ENST00000534830 ZNF142P52746 1687 aaPredicted RBP16.25■□□□□ 0.19
CLSTN3-203ENST00000534830 TCOF1Q13428 1488 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-203ENST00000534830 CLTCQ00610 1675 aaKnown RBP16.24■□□□□ 0.19
CLSTN3-203ENST00000534830 GPATCH8Q9UKJ3 1502 aaKnown RBP16.24■□□□□ 0.19
CLSTN3-203ENST00000534830 CEP162Q5TB80 1403 aa16.23■□□□□ 0.19
CLSTN3-203ENST00000534830 ZNF777Q9ULD5 760 aaPredicted RBP16.22■□□□□ 0.19
CLSTN3-203ENST00000534830 SAMD9LQ8IVG5 1584 aa16.21■□□□□ 0.19
CLSTN3-203ENST00000534830 SPAG9O60271 1321 aaKnown RBP16.21■□□□□ 0.19
CLSTN3-203ENST00000534830 PTPRKQ15262 1439 aa16.21■□□□□ 0.19
CLSTN3-203ENST00000534830 GGT6Q6P531 493 aa16.2■□□□□ 0.18
CLSTN3-203ENST00000534830 SENP3Q9H4L4 574 aaPredicted RBP16.18■□□□□ 0.18
CLSTN3-203ENST00000534830 CPS1P31327 1500 aa16.18■□□□□ 0.18
CLSTN3-203ENST00000534830 HNRNPMP52272 730 aaKnown RBP eCLIP16.17■□□□□ 0.18
CLSTN3-203ENST00000534830 MTUS2Q5JR59 1369 aa16.16■□□□□ 0.18
CLSTN3-203ENST00000534830 SYCP2Q9BX26 1530 aa16.16■□□□□ 0.18
CLSTN3-203ENST00000534830 KIAA1107Q9UPP5 1409 aa16.16■□□□□ 0.18
CLSTN3-203ENST00000534830 A2ML1A8K2U0 1454 aa16.16■□□□□ 0.18
CLSTN3-203ENST00000534830 SHANK2Q9UPX8 1470 aa16.16■□□□□ 0.18
CLSTN3-203ENST00000534830 DNMT1P26358 1616 aaKnown RBP16.15■□□□□ 0.18
CLSTN3-203ENST00000534830 A2MP01023 1474 aa16.15■□□□□ 0.18
CLSTN3-203ENST00000534830 EHBP1L1Q8N3D4 1523 aa16.14■□□□□ 0.18
CLSTN3-203ENST00000534830 CCNB3Q8WWL7 1395 aa16.14■□□□□ 0.17
CLSTN3-203ENST00000534830 TIAM1Q13009 1591 aa16.14■□□□□ 0.17
CLSTN3-203ENST00000534830 LOC105371045A0A1W2PR82 267 aa16.14■□□□□ 0.17
CLSTN3-203ENST00000534830 ATP7AQ04656 1500 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms