RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 CDK13Q14004 1512 aaKnown RBP13.5□□□□□ -0.25
NEDD8-207ENST00000533242 PLCH2O75038 1416 aa13.49□□□□□ -0.25
NEDD8-207ENST00000533242 ARHGEF12Q9NZN5 1544 aa13.49□□□□□ -0.25
NEDD8-207ENST00000533242 SCAPERQ9BY12 1400 aa13.48□□□□□ -0.25
NEDD8-207ENST00000533242 ATP10AO60312 1499 aa13.48□□□□□ -0.25
NEDD8-207ENST00000533242 C9orf84Q5VXU9 1444 aa13.47□□□□□ -0.25
NEDD8-207ENST00000533242 PLPPR3Q6T4P5 718 aa13.47□□□□□ -0.25
NEDD8-207ENST00000533242 CERKQ8TCT0 537 aa13.47□□□□□ -0.25
NEDD8-207ENST00000533242 MLECQ14165 292 aa13.45□□□□□ -0.26
NEDD8-207ENST00000533242 KIF14Q15058 1648 aa13.42□□□□□ -0.26
NEDD8-207ENST00000533242 EFCAB2Q5VUJ9 269 aa13.42□□□□□ -0.26
NEDD8-207ENST00000533242 STRCQ7RTU9 1775 aa13.42□□□□□ -0.26
NEDD8-207ENST00000533242 KDM5CP41229 1560 aa13.42□□□□□ -0.26
NEDD8-207ENST00000533242 FMN1Q68DA7 1419 aa13.42□□□□□ -0.26
NEDD8-207ENST00000533242 ZNF518AQ6AHZ1 1483 aa13.41□□□□□ -0.26
NEDD8-207ENST00000533242 SETD1BQ9UPS6 1966 aaKnown RBP13.41□□□□□ -0.26
NEDD8-207ENST00000533242 REREQ9P2R6 1566 aa13.41□□□□□ -0.26
NEDD8-207ENST00000533242 CDK11AQ9UQ88 783 aaPredicted RBP13.39□□□□□ -0.27
NEDD8-207ENST00000533242 DIP2CQ9Y2E4 1556 aa13.39□□□□□ -0.27
NEDD8-207ENST00000533242 ARHGAP5Q13017 1502 aa13.39□□□□□ -0.27
NEDD8-207ENST00000533242 LRRIQ1Q96JM4 1722 aa13.38□□□□□ -0.27
NEDD8-207ENST00000533242 TROQ12816 1431 aaPredicted RBP13.38□□□□□ -0.27
NEDD8-207ENST00000533242 CDC42BPBQ9Y5S2 1711 aa13.38□□□□□ -0.27
NEDD8-207ENST00000533242 DMRT2Q9Y5R5 561 aa13.38□□□□□ -0.27
NEDD8-207ENST00000533242 ARHGAP35Q9NRY4 1499 aa13.37□□□□□ -0.27
NEDD8-207ENST00000533242 UHRF1BP1Q6BDS2 1440 aa13.37□□□□□ -0.27
NEDD8-207ENST00000533242 C3P01024 1663 aa13.37□□□□□ -0.27
NEDD8-207ENST00000533242 CLIP1P30622 1438 aa13.37□□□□□ -0.27
NEDD8-207ENST00000533242 ABCA6Q8N139 1617 aa13.36□□□□□ -0.27
NEDD8-207ENST00000533242 CEBPAP49715 358 aaPredicted RBP13.36□□□□□ -0.27
NEDD8-207ENST00000533242 ATP1B4Q9UN42 357 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-207ENST00000533242 ITSN2Q9NZM3 1697 aa13.35□□□□□ -0.27
NEDD8-207ENST00000533242 PREX2Q70Z35 1606 aa13.35□□□□□ -0.27
NEDD8-207ENST00000533242 AGLP35573 1532 aa13.35□□□□□ -0.27
NEDD8-207ENST00000533242 MLH3Q9UHC1 1453 aa13.34□□□□□ -0.27
NEDD8-207ENST00000533242 PTPRTO14522 1441 aa13.34□□□□□ -0.27
NEDD8-207ENST00000533242 AFAP1Q8N556 730 aa13.33□□□□□ -0.28
NEDD8-207ENST00000533242 ABCC1P33527 1531 aa13.32□□□□□ -0.28
NEDD8-207ENST00000533242 UBTFP17480 764 aaKnown RBP13.32□□□□□ -0.28
NEDD8-207ENST00000533242 MYT1LQ9UL68 1186 aa13.31□□□□□ -0.28
NEDD8-207ENST00000533242 KIDINS220Q9ULH0 1771 aa13.3□□□□□ -0.28
NEDD8-207ENST00000533242 MROH2AA6NES4 1674 aa13.3□□□□□ -0.28
NEDD8-207ENST00000533242 CDC42BPAQ5VT25 1732 aa13.29□□□□□ -0.28
NEDD8-207ENST00000533242 IQSEC2Q5JU85 1478 aa13.28□□□□□ -0.28
NEDD8-207ENST00000533242 CCDC18Q5T9S5 1454 aa13.28□□□□□ -0.28
NEDD8-207ENST00000533242 CNTLNQ9NXG0 1405 aa13.28□□□□□ -0.28
NEDD8-207ENST00000533242 TRAPPC8Q9Y2L5 1435 aa13.28□□□□□ -0.28
NEDD8-207ENST00000533242 DISP3Q9P2K9 1392 aa13.28□□□□□ -0.28
NEDD8-207ENST00000533242 LTBP4Q8N2S1 1624 aa13.28□□□□□ -0.28
NEDD8-207ENST00000533242 SPATA31D1Q6ZQQ2 1576 aa13.27□□□□□ -0.29
NEDD8-207ENST00000533242 ESF1Q9H501 851 aaKnown RBP13.27□□□□□ -0.29
NEDD8-207ENST00000533242 NCOA1Q15788 1441 aa13.26□□□□□ -0.29
NEDD8-207ENST00000533242 CASKIN1Q8WXD9 1431 aa13.25□□□□□ -0.29
NEDD8-207ENST00000533242 EHMT2Q96KQ7 1210 aa13.25□□□□□ -0.29
NEDD8-207ENST00000533242 ILDR2Q71H61 639 aa13.24□□□□□ -0.29
NEDD8-207ENST00000533242 NPATQ14207 1427 aa13.24□□□□□ -0.29
NEDD8-207ENST00000533242 SAMD9LQ8IVG5 1584 aa13.24□□□□□ -0.29
NEDD8-207ENST00000533242 SOCS7O14512 581 aa13.23□□□□□ -0.29
NEDD8-207ENST00000533242 CAMSAP1Q5T5Y3 1602 aa13.22□□□□□ -0.29
NEDD8-207ENST00000533242 SUPT6HQ7KZ85 1726 aaKnown RBP13.22□□□□□ -0.29
NEDD8-207ENST00000533242 ZNF142P52746 1687 aaPredicted RBP13.22□□□□□ -0.29
NEDD8-207ENST00000533242 CLTCQ00610 1675 aaKnown RBP13.2□□□□□ -0.3
NEDD8-207ENST00000533242 LOC105371045A0A1W2PR82 267 aa13.2□□□□□ -0.3
NEDD8-207ENST00000533242 FYCO1Q9BQS8 1478 aa13.2□□□□□ -0.3
NEDD8-207ENST00000533242 SYCP2Q9BX26 1530 aa13.2□□□□□ -0.3
NEDD8-207ENST00000533242 MYO3AQ8NEV4 1616 aa13.19□□□□□ -0.3
NEDD8-207ENST00000533242 INO80Q9ULG1 1556 aaPredicted RBP13.18□□□□□ -0.3
NEDD8-207ENST00000533242 ATP7AQ04656 1500 aa13.18□□□□□ -0.3
NEDD8-207ENST00000533242 PLXNC1O60486 1568 aa13.18□□□□□ -0.3
NEDD8-207ENST00000533242 ZMYM3Q14202 1370 aa13.18□□□□□ -0.3
NEDD8-207ENST00000533242 GPATCH8Q9UKJ3 1502 aaKnown RBP13.17□□□□□ -0.3
NEDD8-207ENST00000533242 SPAG9O60271 1321 aaKnown RBP13.17□□□□□ -0.3
NEDD8-207ENST00000533242 PLEKHH2Q8IVE3 1493 aa13.16□□□□□ -0.3
NEDD8-207ENST00000533242 PLA2R1Q13018 1463 aa13.16□□□□□ -0.3
NEDD8-207ENST00000533242 ADGBQ8N7X0 1667 aa13.16□□□□□ -0.3
NEDD8-207ENST00000533242 KIAA1107Q9UPP5 1409 aa13.15□□□□□ -0.3
NEDD8-207ENST00000533242 CEP170BQ9Y4F5 1589 aaPredicted RBP13.15□□□□□ -0.3
NEDD8-207ENST00000533242 A2MP01023 1474 aa13.14□□□□□ -0.31
NEDD8-207ENST00000533242 ZNF777Q9ULD5 760 aaPredicted RBP13.14□□□□□ -0.31
NEDD8-207ENST00000533242 PTPRKQ15262 1439 aa13.14□□□□□ -0.31
NEDD8-207ENST00000533242 NCKAP5LQ9HCH0 1330 aa13.13□□□□□ -0.31
NEDD8-207ENST00000533242 PKD2Q13563 968 aa13.13□□□□□ -0.31
NEDD8-207ENST00000533242 TCOF1Q13428 1488 aaKnown RBP13.13□□□□□ -0.31
NEDD8-207ENST00000533242 HNRNPMP52272 730 aaKnown RBP eCLIP13.12□□□□□ -0.31
NEDD8-207ENST00000533242 ZNF335Q9H4Z2 1342 aaPredicted RBP13.11□□□□□ -0.31
NEDD8-207ENST00000533242 PPP6R1Q9UPN7 881 aa13.1□□□□□ -0.31
NEDD8-207ENST00000533242 POLR1AO95602 1720 aaPredicted RBP13.1□□□□□ -0.31
NEDD8-207ENST00000533242 CCNB3Q8WWL7 1395 aa13.09□□□□□ -0.31
NEDD8-207ENST00000533242 UBAP1LF5GYI3 381 aa13.09□□□□□ -0.31
NEDD8-207ENST00000533242 CFDP1Q9UEE9 299 aaPredicted RBP13.09□□□□□ -0.31
NEDD8-207ENST00000533242 A2ML1A8K2U0 1454 aa13.08□□□□□ -0.32
NEDD8-207ENST00000533242 DNMT1P26358 1616 aaKnown RBP13.08□□□□□ -0.32
NEDD8-207ENST00000533242 TIAM1Q13009 1591 aa13.06□□□□□ -0.32
NEDD8-207ENST00000533242 GGT6Q6P531 493 aa13.06□□□□□ -0.32
NEDD8-207ENST00000533242 FAM135AQ9P2D6 1515 aa13.05□□□□□ -0.32
NEDD8-207ENST00000533242 RTEL1-TNFRSF6BF6WH68 1400 aa13.05□□□□□ -0.32
NEDD8-207ENST00000533242 MTUS2Q5JR59 1369 aa13.04□□□□□ -0.32
NEDD8-207ENST00000533242 MBD5Q9P267 1494 aa13.04□□□□□ -0.32
NEDD8-207ENST00000533242 CPS1P31327 1500 aa13.04□□□□□ -0.32
NEDD8-207ENST00000533242 EHBP1L1Q8N3D4 1523 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms