RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-223ENST00000533079 CERKQ8TCT0 537 aa20.97■□□□□ 0.95
CAPN1-223ENST00000533079 MYO5CQ9NQX4 1742 aa20.97■□□□□ 0.95
CAPN1-223ENST00000533079 CDK13Q14004 1512 aaKnown RBP20.97■□□□□ 0.95
CAPN1-223ENST00000533079 SCAPERQ9BY12 1400 aa20.96■□□□□ 0.95
CAPN1-223ENST00000533079 ATP10AO60312 1499 aa20.96■□□□□ 0.95
CAPN1-223ENST00000533079 ZNF518AQ6AHZ1 1483 aa20.93■□□□□ 0.94
CAPN1-223ENST00000533079 KDM5CP41229 1560 aa20.91■□□□□ 0.94
CAPN1-223ENST00000533079 KIF14Q15058 1648 aa20.9■□□□□ 0.94
CAPN1-223ENST00000533079 REREQ9P2R6 1566 aa20.9■□□□□ 0.94
CAPN1-223ENST00000533079 PLPPR3Q6T4P5 718 aa20.9■□□□□ 0.94
CAPN1-223ENST00000533079 RANGAP1P46060 587 aaPredicted RBP20.89■□□□□ 0.93
CAPN1-223ENST00000533079 MLECQ14165 292 aa20.89■□□□□ 0.93
CAPN1-223ENST00000533079 FMN1Q68DA7 1419 aa20.88■□□□□ 0.93
CAPN1-223ENST00000533079 UHRF1BP1Q6BDS2 1440 aa20.87■□□□□ 0.93
CAPN1-223ENST00000533079 DMRT2Q9Y5R5 561 aa20.86■□□□□ 0.93
CAPN1-223ENST00000533079 STRCQ7RTU9 1775 aa20.85■□□□□ 0.93
CAPN1-223ENST00000533079 EFCAB2Q5VUJ9 269 aa20.85■□□□□ 0.93
CAPN1-223ENST00000533079 DIP2CQ9Y2E4 1556 aa20.83■□□□□ 0.92
CAPN1-223ENST00000533079 ARHGAP5Q13017 1502 aa20.83■□□□□ 0.92
CAPN1-223ENST00000533079 CDK11AQ9UQ88 783 aaPredicted RBP20.82■□□□□ 0.92
CAPN1-223ENST00000533079 CLIP1P30622 1438 aa20.8■□□□□ 0.92
CAPN1-223ENST00000533079 TROQ12816 1431 aaPredicted RBP20.79■□□□□ 0.92
CAPN1-223ENST00000533079 PTPRTO14522 1441 aa20.78■□□□□ 0.92
CAPN1-223ENST00000533079 C3P01024 1663 aa20.78■□□□□ 0.92
CAPN1-223ENST00000533079 ABCA6Q8N139 1617 aa20.78■□□□□ 0.92
CAPN1-223ENST00000533079 AGLP35573 1532 aa20.78■□□□□ 0.92
CAPN1-223ENST00000533079 MLH3Q9UHC1 1453 aa20.77■□□□□ 0.92
CAPN1-223ENST00000533079 IQSEC2Q5JU85 1478 aa20.76■□□□□ 0.91
CAPN1-223ENST00000533079 ARHGAP35Q9NRY4 1499 aa20.75■□□□□ 0.91
CAPN1-223ENST00000533079 PREX2Q70Z35 1606 aa20.75■□□□□ 0.91
CAPN1-223ENST00000533079 DISP3Q9P2K9 1392 aa20.75■□□□□ 0.91
CAPN1-223ENST00000533079 SETD1BQ9UPS6 1966 aaKnown RBP20.75■□□□□ 0.91
CAPN1-223ENST00000533079 CEBPAP49715 358 aaPredicted RBP20.74■□□□□ 0.91
CAPN1-223ENST00000533079 SPATA31D1Q6ZQQ2 1576 aa20.74■□□□□ 0.91
CAPN1-223ENST00000533079 ABCC1P33527 1531 aa20.73■□□□□ 0.91
CAPN1-223ENST00000533079 CDC42BPBQ9Y5S2 1711 aa20.73■□□□□ 0.91
CAPN1-223ENST00000533079 CNTLNQ9NXG0 1405 aa20.71■□□□□ 0.91
CAPN1-223ENST00000533079 ITSN2Q9NZM3 1697 aa20.71■□□□□ 0.91
CAPN1-223ENST00000533079 LRRIQ1Q96JM4 1722 aa20.7■□□□□ 0.9
CAPN1-223ENST00000533079 TRAPPC8Q9Y2L5 1435 aa20.7■□□□□ 0.9
CAPN1-223ENST00000533079 SOCS7O14512 581 aa20.69■□□□□ 0.9
CAPN1-223ENST00000533079 AFAP1Q8N556 730 aa20.69■□□□□ 0.9
CAPN1-223ENST00000533079 MROH2AA6NES4 1674 aa20.69■□□□□ 0.9
CAPN1-223ENST00000533079 LTBP4Q8N2S1 1624 aa20.68■□□□□ 0.9
CAPN1-223ENST00000533079 ATP1B4Q9UN42 357 aaPredicted RBP20.68■□□□□ 0.9
CAPN1-223ENST00000533079 CCDC18Q5T9S5 1454 aa20.68■□□□□ 0.9
CAPN1-223ENST00000533079 ESF1Q9H501 851 aaKnown RBP20.66■□□□□ 0.9
CAPN1-223ENST00000533079 MYT1LQ9UL68 1186 aa20.66■□□□□ 0.9
CAPN1-223ENST00000533079 NCOA1Q15788 1441 aa20.66■□□□□ 0.9
CAPN1-223ENST00000533079 KIDINS220Q9ULH0 1771 aa20.65■□□□□ 0.9
CAPN1-223ENST00000533079 NPATQ14207 1427 aa20.64■□□□□ 0.89
CAPN1-223ENST00000533079 ILDR2Q71H61 639 aa20.64■□□□□ 0.89
CAPN1-223ENST00000533079 UBTFP17480 764 aaKnown RBP20.61■□□□□ 0.89
CAPN1-223ENST00000533079 CDC42BPAQ5VT25 1732 aa20.6■□□□□ 0.89
CAPN1-223ENST00000533079 ZNF142P52746 1687 aaPredicted RBP20.59■□□□□ 0.89
CAPN1-223ENST00000533079 CAMSAP1Q5T5Y3 1602 aa20.59■□□□□ 0.89
CAPN1-223ENST00000533079 CASKIN1Q8WXD9 1431 aa20.58■□□□□ 0.88
CAPN1-223ENST00000533079 SAMD9LQ8IVG5 1584 aa20.58■□□□□ 0.88
CAPN1-223ENST00000533079 MYO3AQ8NEV4 1616 aa20.55■□□□□ 0.88
CAPN1-223ENST00000533079 PLA2R1Q13018 1463 aa20.55■□□□□ 0.88
CAPN1-223ENST00000533079 PLXNC1O60486 1568 aa20.54■□□□□ 0.88
CAPN1-223ENST00000533079 FYCO1Q9BQS8 1478 aa20.53■□□□□ 0.88
CAPN1-223ENST00000533079 SYCP2Q9BX26 1530 aa20.53■□□□□ 0.88
CAPN1-223ENST00000533079 INO80Q9ULG1 1556 aaPredicted RBP20.51■□□□□ 0.87
CAPN1-223ENST00000533079 ATP7AQ04656 1500 aa20.51■□□□□ 0.87
CAPN1-223ENST00000533079 CEP170BQ9Y4F5 1589 aaPredicted RBP20.5■□□□□ 0.87
CAPN1-223ENST00000533079 ZMYM3Q14202 1370 aa20.49■□□□□ 0.87
CAPN1-223ENST00000533079 CLTCQ00610 1675 aaKnown RBP20.49■□□□□ 0.87
CAPN1-223ENST00000533079 SUPT6HQ7KZ85 1726 aaKnown RBP20.49■□□□□ 0.87
CAPN1-223ENST00000533079 PLEKHH2Q8IVE3 1493 aa20.49■□□□□ 0.87
CAPN1-223ENST00000533079 TCOF1Q13428 1488 aaKnown RBP20.48■□□□□ 0.87
CAPN1-223ENST00000533079 KIAA1107Q9UPP5 1409 aa20.46■□□□□ 0.87
CAPN1-223ENST00000533079 GPATCH8Q9UKJ3 1502 aaKnown RBP20.45■□□□□ 0.86
CAPN1-223ENST00000533079 PKD2Q13563 968 aa20.45■□□□□ 0.86
CAPN1-223ENST00000533079 SPAG9O60271 1321 aaKnown RBP20.45■□□□□ 0.86
CAPN1-223ENST00000533079 A2MP01023 1474 aa20.44■□□□□ 0.86
CAPN1-223ENST00000533079 EHMT2Q96KQ7 1210 aa20.44■□□□□ 0.86
CAPN1-223ENST00000533079 ADGBQ8N7X0 1667 aa20.43■□□□□ 0.86
CAPN1-223ENST00000533079 PTPRKQ15262 1439 aa20.43■□□□□ 0.86
CAPN1-223ENST00000533079 ZNF335Q9H4Z2 1342 aaPredicted RBP20.41■□□□□ 0.86
CAPN1-223ENST00000533079 PPP6R1Q9UPN7 881 aa20.39■□□□□ 0.85
CAPN1-223ENST00000533079 NCKAP5LQ9HCH0 1330 aa20.38■□□□□ 0.85
CAPN1-223ENST00000533079 UBAP1LF5GYI3 381 aa20.38■□□□□ 0.85
CAPN1-223ENST00000533079 FAM135AQ9P2D6 1515 aa20.37■□□□□ 0.85
CAPN1-223ENST00000533079 ZNF777Q9ULD5 760 aaPredicted RBP20.37■□□□□ 0.85
CAPN1-223ENST00000533079 A2ML1A8K2U0 1454 aa20.37■□□□□ 0.85
CAPN1-223ENST00000533079 POLR1AO95602 1720 aaPredicted RBP20.36■□□□□ 0.85
CAPN1-223ENST00000533079 CPS1P31327 1500 aa20.35■□□□□ 0.85
CAPN1-223ENST00000533079 DNMT1P26358 1616 aaKnown RBP20.35■□□□□ 0.85
CAPN1-223ENST00000533079 HNRNPMP52272 730 aaKnown RBP eCLIP20.33■□□□□ 0.85
CAPN1-223ENST00000533079 CCNB3Q8WWL7 1395 aa20.33■□□□□ 0.84
CAPN1-223ENST00000533079 CFDP1Q9UEE9 299 aaPredicted RBP20.32■□□□□ 0.84
CAPN1-223ENST00000533079 RTEL1-TNFRSF6BF6WH68 1400 aa20.3■□□□□ 0.84
CAPN1-223ENST00000533079 TIAM1Q13009 1591 aa20.29■□□□□ 0.84
CAPN1-223ENST00000533079 MED1Q15648 1581 aaPredicted RBP20.29■□□□□ 0.84
CAPN1-223ENST00000533079 NEURL4Q96JN8 1562 aa20.29■□□□□ 0.84
CAPN1-223ENST00000533079 GGT6Q6P531 493 aa20.29■□□□□ 0.84
CAPN1-223ENST00000533079 KDM5DQ9BY66 1539 aa20.28■□□□□ 0.84
CAPN1-223ENST00000533079 EHBP1L1Q8N3D4 1523 aa20.27■□□□□ 0.84
CAPN1-223ENST00000533079 MTUS2Q5JR59 1369 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms