RNA–Protein interactions for RNA: ENST00000532649.5

CTNND1-232, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,026 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-232ENST00000532649 OSCARQ8IYS5 282 aa11.37□□□□□ -0.59
CTNND1-232ENST00000532649 U2SURPO15042 1029 aaKnown RBP11.37□□□□□ -0.59
CTNND1-232ENST00000532649 MPHOSPH9Q99550 1183 aa11.37□□□□□ -0.59
CTNND1-232ENST00000532649 PTPRGP23470 1445 aa11.36□□□□□ -0.59
CTNND1-232ENST00000532649 GAPVD1Q14C86 1478 aa11.36□□□□□ -0.59
CTNND1-232ENST00000532649 RAD54L2Q9Y4B4 1467 aa11.35□□□□□ -0.59
CTNND1-232ENST00000532649 RAB3GAP2Q9H2M9 1393 aa11.35□□□□□ -0.59
CTNND1-232ENST00000532649 NCAPD3P42695 1498 aa11.35□□□□□ -0.59
CTNND1-232ENST00000532649 CLSTN1O94985 981 aa11.34□□□□□ -0.59
CTNND1-232ENST00000532649 TIMELESSQ9UNS1 1208 aa11.34□□□□□ -0.59
CTNND1-232ENST00000532649 RSPH4AQ5TD94 716 aa11.34□□□□□ -0.59
CTNND1-232ENST00000532649 WASHC2CQ9Y4E1 1318 aa11.33□□□□□ -0.6
CTNND1-232ENST00000532649 TRIM44Q96DX7 344 aaPredicted RBP11.32□□□□□ -0.6
CTNND1-232ENST00000532649 FTSJ3Q8IY81 847 aaKnown RBP11.32□□□□□ -0.6
CTNND1-232ENST00000532649 HSPA5P11021 654 aaKnown RBP11.32□□□□□ -0.6
CTNND1-232ENST00000532649 CASC1Q6TDU7 716 aa11.32□□□□□ -0.6
CTNND1-232ENST00000532649 ROCK2O75116 1388 aaKnown RBP11.31□□□□□ -0.6
CTNND1-232ENST00000532649 MORC1Q86VD1 984 aa11.31□□□□□ -0.6
CTNND1-232ENST00000532649 GOLGA6L22H0YM25 854 aa11.3□□□□□ -0.6
CTNND1-232ENST00000532649 HDGFL2Q7Z4V5 671 aaPredicted RBP11.3□□□□□ -0.6
CTNND1-232ENST00000532649 PNNQ9H307 717 aaKnown RBP11.3□□□□□ -0.6
CTNND1-232ENST00000532649 NUTM2DQ5VT03 806 aaPredicted RBP11.29□□□□□ -0.6
CTNND1-232ENST00000532649 AQRO60306 1485 aaKnown RBP eCLIP11.29□□□□□ -0.62e-9■■■□□ 18.1
CTNND1-232ENST00000532649 PAK3O75914 559 aaPredicted RBP11.29□□□□□ -0.6
CTNND1-232ENST00000532649 IGF1RP08069 1367 aa11.28□□□□□ -0.6
CTNND1-232ENST00000532649 PTMAP06454 111 aaKnown RBP11.28□□□□□ -0.6
CTNND1-232ENST00000532649 EID1Q9Y6B2 187 aa11.28□□□□□ -0.6
CTNND1-232ENST00000532649 GOLGA6L6A8MZA4 724 aa11.28□□□□□ -0.6
CTNND1-232ENST00000532649 BECN1Q14457 450 aa11.27□□□□□ -0.61
CTNND1-232ENST00000532649 FRAT1Q92837 279 aaPredicted RBP11.27□□□□□ -0.61
CTNND1-232ENST00000532649 GOLGA2Q08379 1002 aa11.26□□□□□ -0.61
CTNND1-232ENST00000532649 SUPT16HQ9Y5B9 1047 aaKnown RBP11.26□□□□□ -0.61
CTNND1-232ENST00000532649 CC2D2AQ9P2K1 1620 aa11.25□□□□□ -0.61
CTNND1-232ENST00000532649 NBR1Q14596 966 aa11.25□□□□□ -0.61
CTNND1-232ENST00000532649 TAOK2Q9UL54 1235 aa11.25□□□□□ -0.61
CTNND1-232ENST00000532649 PRM3Q9NNZ6 103 aa11.24□□□□□ -0.61
CTNND1-232ENST00000532649 EIF3AQ14152 1382 aaKnown RBP11.24□□□□□ -0.61
CTNND1-232ENST00000532649 ANP32EQ9BTT0 268 aa11.24□□□□□ -0.61
CTNND1-232ENST00000532649 TPRNQ4KMQ1 711 aa11.24□□□□□ -0.61
CTNND1-232ENST00000532649 NESP48681 1621 aa11.23□□□□□ -0.61
CTNND1-232ENST00000532649 KTN1Q86UP2 1357 aaKnown RBP11.23□□□□□ -0.61
CTNND1-232ENST00000532649 DNTTIP2Q5QJE6 756 aaKnown RBP11.23□□□□□ -0.61
CTNND1-232ENST00000532649 L3MBTL2Q969R5 705 aa11.22□□□□□ -0.61
CTNND1-232ENST00000532649 PRDM2Q13029 1718 aa11.22□□□□□ -0.61
CTNND1-232ENST00000532649 FAM69CQ0P6D2 419 aa11.21□□□□□ -0.61
CTNND1-232ENST00000532649 RTF1Q92541 710 aaKnown RBP11.21□□□□□ -0.61
CTNND1-232ENST00000532649 CSB-PGBD3P0DP91 1061 aa11.21□□□□□ -0.62
CTNND1-232ENST00000532649 DDRGK1Q96HY6 314 aa11.21□□□□□ -0.62
CTNND1-232ENST00000532649 GRIN2BQ13224 1484 aa11.2□□□□□ -0.62
CTNND1-232ENST00000532649 MRC2Q9UBG0 1479 aa11.19□□□□□ -0.62
CTNND1-232ENST00000532649 ISY1Q9ULR0 285 aaKnown RBP11.19□□□□□ -0.62
CTNND1-232ENST00000532649 CCDC144AA2RUR9 1427 aa11.19□□□□□ -0.62
CTNND1-232ENST00000532649 CFTRP13569 1480 aa11.19□□□□□ -0.62
CTNND1-232ENST00000532649 OS9Q13438 667 aaPredicted RBP11.19□□□□□ -0.62
CTNND1-232ENST00000532649 MS4A1P11836 297 aa11.18□□□□□ -0.62
CTNND1-232ENST00000532649 TRAK1Q9UPV9 953 aa11.18□□□□□ -0.62
CTNND1-232ENST00000532649 NUTM2FA1L443 756 aa11.18□□□□□ -0.62
CTNND1-232ENST00000532649 FGD1P98174 961 aa11.18□□□□□ -0.62
CTNND1-232ENST00000532649 NGDNQ8NEJ9 315 aaKnown RBP11.18□□□□□ -0.62
CTNND1-232ENST00000532649 CHMP4BQ9H444 224 aaKnown RBP11.18□□□□□ -0.62
CTNND1-232ENST00000532649 TERF2IPQ9NYB0 399 aa11.17□□□□□ -0.62
CTNND1-232ENST00000532649 U2AF1L5P0DN76 240 aaPredicted RBP11.17□□□□□ -0.62
CTNND1-232ENST00000532649 U2AF1Q01081 240 aaKnown RBP eCLIP11.17□□□□□ -0.622e-10■■□□□ 12.3
CTNND1-232ENST00000532649 NAP1L2Q9ULW6 460 aaPredicted RBP11.17□□□□□ -0.62
CTNND1-232ENST00000532649 NRDCO43847 1150 aa11.16□□□□□ -0.62
CTNND1-232ENST00000532649 L1TD1Q5T7N2 865 aaKnown RBP11.16□□□□□ -0.62
CTNND1-232ENST00000532649 CCER2I3L3R5 266 aa11.15□□□□□ -0.63
CTNND1-232ENST00000532649 RGS3P49796 1198 aa11.14□□□□□ -0.63
CTNND1-232ENST00000532649 KRI1Q8N9T8 703 aaKnown RBP11.14□□□□□ -0.63
CTNND1-232ENST00000532649 HMGXB3Q12766 1538 aa11.14□□□□□ -0.63
CTNND1-232ENST00000532649 CCDC9Q9Y3X0 531 aaKnown RBP11.14□□□□□ -0.63
CTNND1-232ENST00000532649 UACAQ9BZF9 1416 aa11.14□□□□□ -0.63
CTNND1-232ENST00000532649 RALBP1Q15311 655 aa11.14□□□□□ -0.63
CTNND1-232ENST00000532649 IFT140Q96RY7 1462 aa11.13□□□□□ -0.63
CTNND1-232ENST00000532649 MYOM3Q5VTT5 1437 aa11.13□□□□□ -0.63
CTNND1-232ENST00000532649 TMX4Q9H1E5 349 aaPredicted RBP11.13□□□□□ -0.63
CTNND1-232ENST00000532649 VGFO15240 615 aaPredicted RBP11.12□□□□□ -0.63
CTNND1-232ENST00000532649 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.12□□□□□ -0.632e-8■□□□□ 11.3
CTNND1-232ENST00000532649 KIAA2012Q0VF49 1180 aa11.12□□□□□ -0.63
CTNND1-232ENST00000532649 PLCB2Q00722 1185 aa11.12□□□□□ -0.63
CTNND1-232ENST00000532649 ZNF644Q9H582 1327 aaPredicted RBP11.12□□□□□ -0.63
CTNND1-232ENST00000532649 SYNJ1O43426 1573 aa11.12□□□□□ -0.63
CTNND1-232ENST00000532649 PRG4Q92954 1404 aaPredicted RBP11.12□□□□□ -0.63
CTNND1-232ENST00000532649 KCNJ4P48050 445 aa11.11□□□□□ -0.63
CTNND1-232ENST00000532649 TOPBP1Q92547 1522 aa11.11□□□□□ -0.63
CTNND1-232ENST00000532649 PPP4R2Q9NY27 417 aa11.11□□□□□ -0.63
CTNND1-232ENST00000532649 CUX1P39880 1505 aa11.11□□□□□ -0.63
CTNND1-232ENST00000532649 ZNF330Q9Y3S2 320 aaPredicted RBP11.11□□□□□ -0.63
CTNND1-232ENST00000532649 CALD1Q05682 793 aaKnown RBP11.1□□□□□ -0.63
CTNND1-232ENST00000532649 AMPHP49418 695 aa11.1□□□□□ -0.63
CTNND1-232ENST00000532649 KIF21BO75037 1637 aa11.09□□□□□ -0.63
CTNND1-232ENST00000532649 ST20-MTHFSA0A0A6YYL1 179 aa11.09□□□□□ -0.63
CTNND1-232ENST00000532649 FGD6Q6ZV73 1430 aa11.09□□□□□ -0.63
CTNND1-232ENST00000532649 LTV1Q96GA3 475 aaPredicted RBP11.09□□□□□ -0.63
CTNND1-232ENST00000532649 KIF15Q9NS87 1388 aa11.08□□□□□ -0.63
CTNND1-232ENST00000532649 DHX57Q6P158 1386 aaKnown RBP11.08□□□□□ -0.64
CTNND1-232ENST00000532649 SYNJ2O15056 1496 aa11.08□□□□□ -0.64
CTNND1-232ENST00000532649 ARHGAP5Q13017 1502 aa11.08□□□□□ -0.64
CTNND1-232ENST00000532649 POLA1P09884 1462 aaPredicted RBP11.08□□□□□ -0.64
CTNND1-232ENST00000532649 SNAPC4Q5SXM2 1469 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms