RNA–Protein interactions for RNA: ENST00000524165.5

PVT1-220, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 458 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-220ENST00000524165 MLECQ14165 292 aa30.16■■■□□ 2.42
PVT1-220ENST00000524165 ARHGEF12Q9NZN5 1544 aa30.15■■■□□ 2.42
PVT1-220ENST00000524165 HECW1Q76N89 1606 aa30.14■■■□□ 2.41
PVT1-220ENST00000524165 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.12■■■□□ 2.41
PVT1-220ENST00000524165 PLEKHD1A6NEE1 506 aa30.12■■■□□ 2.41
PVT1-220ENST00000524165 SETD1BQ9UPS6 1966 aaKnown RBP30.1■■■□□ 2.41
PVT1-220ENST00000524165 ATP10AO60312 1499 aa30.04■■■□□ 2.4
PVT1-220ENST00000524165 PTPRTO14522 1441 aa30.04■■■□□ 2.4
PVT1-220ENST00000524165 UHRF1BP1Q6BDS2 1440 aa30.04■■■□□ 2.4
PVT1-220ENST00000524165 C9orf84Q5VXU9 1444 aa30.02■■■□□ 2.4
PVT1-220ENST00000524165 CEBPAP49715 358 aaPredicted RBP30.01■■■□□ 2.39
PVT1-220ENST00000524165 IQSEC2Q5JU85 1478 aa30■■■□□ 2.39
PVT1-220ENST00000524165 SCAPERQ9BY12 1400 aa29.99■■■□□ 2.39
PVT1-220ENST00000524165 LTBP4Q8N2S1 1624 aa29.96■■■□□ 2.39
PVT1-220ENST00000524165 PLCH2O75038 1416 aa29.92■■■□□ 2.38
PVT1-220ENST00000524165 C3P01024 1663 aa29.85■■■□□ 2.37
PVT1-220ENST00000524165 MYO5CQ9NQX4 1742 aa29.82■■■□□ 2.36
PVT1-220ENST00000524165 ZNF518AQ6AHZ1 1483 aa29.8■■■□□ 2.36
PVT1-220ENST00000524165 EFCAB2Q5VUJ9 269 aa29.79■■■□□ 2.36
PVT1-220ENST00000524165 REREQ9P2R6 1566 aa29.78■■■□□ 2.36
PVT1-220ENST00000524165 NCOA1Q15788 1441 aa29.78■■■□□ 2.36
PVT1-220ENST00000524165 KDM5CP41229 1560 aa29.77■■■□□ 2.36
PVT1-220ENST00000524165 CSRNP3Q8WYN3 585 aa29.76■■■□□ 2.35
PVT1-220ENST00000524165 CDK13Q14004 1512 aaKnown RBP29.76■■■□□ 2.35
PVT1-220ENST00000524165 TRAPPC8Q9Y2L5 1435 aa29.75■■■□□ 2.35
PVT1-220ENST00000524165 DIP2CQ9Y2E4 1556 aa29.73■■■□□ 2.35
PVT1-220ENST00000524165 RANGAP1P46060 587 aaPredicted RBP29.73■■■□□ 2.35
PVT1-220ENST00000524165 AGLP35573 1532 aa29.68■■■□□ 2.34
PVT1-220ENST00000524165 AFAP1Q8N556 730 aa29.67■■■□□ 2.34
PVT1-220ENST00000524165 ESF1Q9H501 851 aaKnown RBP29.66■■■□□ 2.34
PVT1-220ENST00000524165 ABCA6Q8N139 1617 aa29.65■■■□□ 2.34
PVT1-220ENST00000524165 UBAP1LF5GYI3 381 aa29.65■■■□□ 2.34
PVT1-220ENST00000524165 CAMSAP1Q5T5Y3 1602 aa29.63■■■□□ 2.33
PVT1-220ENST00000524165 MLH3Q9UHC1 1453 aa29.62■■■□□ 2.33
PVT1-220ENST00000524165 MYT1LQ9UL68 1186 aa29.62■■■□□ 2.33
PVT1-220ENST00000524165 CNTLNQ9NXG0 1405 aa29.62■■■□□ 2.33
PVT1-220ENST00000524165 ARHGAP5Q13017 1502 aa29.61■■■□□ 2.33
PVT1-220ENST00000524165 KIF14Q15058 1648 aa29.59■■■□□ 2.33
PVT1-220ENST00000524165 NPATQ14207 1427 aa29.57■■■□□ 2.32
PVT1-220ENST00000524165 ZNF335Q9H4Z2 1342 aaPredicted RBP29.57■■■□□ 2.32
PVT1-220ENST00000524165 MROH2AA6NES4 1674 aa29.56■■■□□ 2.32
PVT1-220ENST00000524165 CDK11AQ9UQ88 783 aaPredicted RBP29.55■■■□□ 2.32
PVT1-220ENST00000524165 MED1Q15648 1581 aaPredicted RBP29.52■■■□□ 2.32
PVT1-220ENST00000524165 NCKAP5LQ9HCH0 1330 aa29.5■■■□□ 2.31
PVT1-220ENST00000524165 EEA1Q15075 1411 aa29.5■■■□□ 2.31
PVT1-220ENST00000524165 CDC42BPBQ9Y5S2 1711 aa29.5■■■□□ 2.31
PVT1-220ENST00000524165 PLA2R1Q13018 1463 aa29.48■■■□□ 2.31
PVT1-220ENST00000524165 TROQ12816 1431 aaPredicted RBP29.48■■■□□ 2.31
PVT1-220ENST00000524165 ZNF142P52746 1687 aaPredicted RBP29.47■■■□□ 2.31
PVT1-220ENST00000524165 PKD2Q13563 968 aa29.47■■■□□ 2.31
PVT1-220ENST00000524165 KIDINS220Q9ULH0 1771 aa29.47■■■□□ 2.31
PVT1-220ENST00000524165 FMN1Q68DA7 1419 aa29.45■■■□□ 2.31
PVT1-220ENST00000524165 SUPT6HQ7KZ85 1726 aaKnown RBP29.45■■■□□ 2.31
PVT1-220ENST00000524165 CLIP1P30622 1438 aa29.45■■■□□ 2.3
PVT1-220ENST00000524165 ITSN2Q9NZM3 1697 aa29.44■■■□□ 2.3
PVT1-220ENST00000524165 ABCC1P33527 1531 aa29.44■■■□□ 2.3
PVT1-220ENST00000524165 ATP1B4Q9UN42 357 aaPredicted RBP29.43■■■□□ 2.3
PVT1-220ENST00000524165 TCOF1Q13428 1488 aaKnown RBP29.42■■■□□ 2.3
PVT1-220ENST00000524165 ZMYM3Q14202 1370 aa29.42■■■□□ 2.3
PVT1-220ENST00000524165 MYO3AQ8NEV4 1616 aa29.41■■■□□ 2.3
PVT1-220ENST00000524165 HSPA1LP34931 641 aa29.4■■■□□ 2.3
PVT1-220ENST00000524165 PREX2Q70Z35 1606 aa29.4■■■□□ 2.3
PVT1-220ENST00000524165 CEP170BQ9Y4F5 1589 aaPredicted RBP29.37■■■□□ 2.29
PVT1-220ENST00000524165 PPP6R1Q9UPN7 881 aa29.34■■■□□ 2.29
PVT1-220ENST00000524165 LRRIQ1Q96JM4 1722 aa29.32■■■□□ 2.28
PVT1-220ENST00000524165 CLTCQ00610 1675 aaKnown RBP29.32■■■□□ 2.28
PVT1-220ENST00000524165 SCAF1Q9H7N4 1312 aaKnown RBP29.31■■■□□ 2.28
PVT1-220ENST00000524165 TOM1O60784 492 aa29.31■■■□□ 2.28
PVT1-220ENST00000524165 PIP4K2BP78356 416 aa29.28■■■□□ 2.28
PVT1-220ENST00000524165 CPS1P31327 1500 aa29.28■■■□□ 2.28
PVT1-220ENST00000524165 PTPRKQ15262 1439 aa29.28■■■□□ 2.28
PVT1-220ENST00000524165 SAMD9LQ8IVG5 1584 aa29.27■■■□□ 2.28
PVT1-220ENST00000524165 PHF23Q9BUL5 403 aaPredicted RBP29.26■■■□□ 2.27
PVT1-220ENST00000524165 ARHGAP35Q9NRY4 1499 aa29.25■■■□□ 2.27
PVT1-220ENST00000524165 CDC42BPAQ5VT25 1732 aa29.24■■■□□ 2.27
PVT1-220ENST00000524165 POLR1AO95602 1720 aaPredicted RBP29.21■■■□□ 2.27
PVT1-220ENST00000524165 PLXNC1O60486 1568 aa29.2■■■□□ 2.26
PVT1-220ENST00000524165 DNMT1P26358 1616 aaKnown RBP29.19■■■□□ 2.26
PVT1-220ENST00000524165 A2ML1A8K2U0 1454 aa29.18■■■□□ 2.26
PVT1-220ENST00000524165 SHANK2Q9UPX8 1470 aa29.17■■■□□ 2.26
PVT1-220ENST00000524165 SPAG9O60271 1321 aaKnown RBP29.17■■■□□ 2.26
PVT1-220ENST00000524165 ATP7AQ04656 1500 aa29.15■■■□□ 2.26
PVT1-220ENST00000524165 NEURL4Q96JN8 1562 aa29.13■■■□□ 2.25
PVT1-220ENST00000524165 A2MP01023 1474 aa29.13■■■□□ 2.25
PVT1-220ENST00000524165 SYCP2Q9BX26 1530 aa29.13■■■□□ 2.25
PVT1-220ENST00000524165 CCDC18Q5T9S5 1454 aa29.11■■■□□ 2.25
PVT1-220ENST00000524165 INO80Q9ULG1 1556 aaPredicted RBP29.11■■■□□ 2.25
PVT1-220ENST00000524165 ALKQ9UM73 1620 aa29.1■■■□□ 2.25
PVT1-220ENST00000524165 UBTFP17480 764 aaKnown RBP29.08■■■□□ 2.25
PVT1-220ENST00000524165 GGT6Q6P531 493 aa29.08■■■□□ 2.25
PVT1-220ENST00000524165 ZNF777Q9ULD5 760 aaPredicted RBP29.06■■■□□ 2.24
PVT1-220ENST00000524165 VWDEQ8N2E2 1590 aa29.05■■■□□ 2.24
PVT1-220ENST00000524165 HNRNPMP52272 730 aaKnown RBP eCLIP29.04■■■□□ 2.246e-7■■■□□ 16.1
PVT1-220ENST00000524165 KIAA1107Q9UPP5 1409 aa29.03■■■□□ 2.24
PVT1-220ENST00000524165 ADGBQ8N7X0 1667 aa29.03■■■□□ 2.24
PVT1-220ENST00000524165 CASKIN1Q8WXD9 1431 aa29.01■■■□□ 2.23
PVT1-220ENST00000524165 GPATCH8Q9UKJ3 1502 aaKnown RBP29■■■□□ 2.23
PVT1-220ENST00000524165 PLEKHH2Q8IVE3 1493 aa29■■■□□ 2.23
PVT1-220ENST00000524165 ANKLE2Q86XL3 938 aa28.97■■■□□ 2.23
PVT1-220ENST00000524165 TNRQ92752 1358 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms