RNA–Protein interactions for RNA: ENST00000520913.1

PVT1-209, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 584 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-209ENST00000520913 RAPGEF3O95398 923 aa17.51■□□□□ 0.39
PVT1-209ENST00000520913 CDC42BPAQ5VT25 1732 aa17.5■□□□□ 0.39
PVT1-209ENST00000520913 ZFYVE16Q7Z3T8 1539 aa17.5■□□□□ 0.39
PVT1-209ENST00000520913 ARHGAP5Q13017 1502 aa17.49■□□□□ 0.39
PVT1-209ENST00000520913 POGZQ7Z3K3 1410 aa17.48■□□□□ 0.39
PVT1-209ENST00000520913 MADDQ8WXG6 1647 aa17.48■□□□□ 0.39
PVT1-209ENST00000520913 MAGI2Q86UL8 1455 aa17.47■□□□□ 0.39
PVT1-209ENST00000520913 HECW2Q9P2P5 1572 aa17.47■□□□□ 0.39
PVT1-209ENST00000520913 ITSN2Q9NZM3 1697 aa17.47■□□□□ 0.39
PVT1-209ENST00000520913 SIGLEC1Q9BZZ2 1709 aa17.47■□□□□ 0.39
PVT1-209ENST00000520913 RIMS1Q86UR5 1692 aaKnown RBP17.45■□□□□ 0.38
PVT1-209ENST00000520913 SCAPERQ9BY12 1400 aa17.44■□□□□ 0.38
PVT1-209ENST00000520913 KDM5CP41229 1560 aa17.44■□□□□ 0.38
PVT1-209ENST00000520913 FER1L4A9Z1Z3 1794 aa17.43■□□□□ 0.38
PVT1-209ENST00000520913 ZNF518AQ6AHZ1 1483 aa17.43■□□□□ 0.38
PVT1-209ENST00000520913 ABCC1P33527 1531 aa17.42■□□□□ 0.38
PVT1-209ENST00000520913 YEATS2Q9ULM3 1422 aa17.4■□□□□ 0.38
PVT1-209ENST00000520913 EFCAB2Q5VUJ9 269 aa17.4■□□□□ 0.38
PVT1-209ENST00000520913 PTPRMP28827 1452 aa17.39■□□□□ 0.37
PVT1-209ENST00000520913 CEP162Q5TB80 1403 aa17.38■□□□□ 0.37
PVT1-209ENST00000520913 DIP2CQ9Y2E4 1556 aa17.36■□□□□ 0.37
PVT1-209ENST00000520913 ABCA6Q8N139 1617 aa17.36■□□□□ 0.37
PVT1-209ENST00000520913 ARID4BQ4LE39 1312 aaPredicted RBP17.36■□□□□ 0.37
PVT1-209ENST00000520913 EHBP1L1Q8N3D4 1523 aa17.36■□□□□ 0.37
PVT1-209ENST00000520913 C9orf84Q5VXU9 1444 aa17.35■□□□□ 0.37
PVT1-209ENST00000520913 SAMD9LQ8IVG5 1584 aa17.35■□□□□ 0.37
PVT1-209ENST00000520913 REREQ9P2R6 1566 aa17.35■□□□□ 0.37
PVT1-209ENST00000520913 ATP10AO60312 1499 aa17.32■□□□□ 0.36
PVT1-209ENST00000520913 KIDINS220Q9ULH0 1771 aa17.32■□□□□ 0.36
PVT1-209ENST00000520913 TIAM1Q13009 1591 aa17.31■□□□□ 0.36
PVT1-209ENST00000520913 SYCP2Q9BX26 1530 aa17.31■□□□□ 0.36
PVT1-209ENST00000520913 ARHGEF12Q9NZN5 1544 aa17.3■□□□□ 0.36
PVT1-209ENST00000520913 MLH3Q9UHC1 1453 aa17.3■□□□□ 0.36
PVT1-209ENST00000520913 GPATCH8Q9UKJ3 1502 aaKnown RBP17.29■□□□□ 0.36
PVT1-209ENST00000520913 SUPT6HQ7KZ85 1726 aaKnown RBP17.29■□□□□ 0.36
PVT1-209ENST00000520913 MTUS2Q5JR59 1369 aa17.28■□□□□ 0.36
PVT1-209ENST00000520913 INO80Q9ULG1 1556 aaPredicted RBP17.27■□□□□ 0.35
PVT1-209ENST00000520913 TRAPPC8Q9Y2L5 1435 aa17.26■□□□□ 0.35
PVT1-209ENST00000520913 PLEKHH2Q8IVE3 1493 aa17.25■□□□□ 0.35
PVT1-209ENST00000520913 PREX1Q8TCU6 1659 aa17.24■□□□□ 0.35
PVT1-209ENST00000520913 CCNB3Q8WWL7 1395 aa17.24■□□□□ 0.35
PVT1-209ENST00000520913 AGLP35573 1532 aa17.23■□□□□ 0.35
PVT1-209ENST00000520913 AFAP1Q8N556 730 aa17.23■□□□□ 0.35
PVT1-209ENST00000520913 LMTK3Q96Q04 1460 aa17.23■□□□□ 0.35
PVT1-209ENST00000520913 ATP7AQ04656 1500 aa17.22■□□□□ 0.35
PVT1-209ENST00000520913 ADGBQ8N7X0 1667 aa17.21■□□□□ 0.35
PVT1-209ENST00000520913 MYT1LQ9UL68 1186 aa17.21■□□□□ 0.35
PVT1-209ENST00000520913 VPS8Q8N3P4 1428 aa17.21■□□□□ 0.34
PVT1-209ENST00000520913 C3P01024 1663 aa17.2■□□□□ 0.34
PVT1-209ENST00000520913 KIAA1107Q9UPP5 1409 aa17.2■□□□□ 0.34
PVT1-209ENST00000520913 MLECQ14165 292 aa17.19■□□□□ 0.34
PVT1-209ENST00000520913 PLXNC1O60486 1568 aa17.19■□□□□ 0.34
PVT1-209ENST00000520913 MROH2AA6NES4 1674 aa17.18■□□□□ 0.34
PVT1-209ENST00000520913 ZNF777Q9ULD5 760 aaPredicted RBP17.17■□□□□ 0.34
PVT1-209ENST00000520913 CFDP1Q9UEE9 299 aaPredicted RBP17.16■□□□□ 0.34
PVT1-209ENST00000520913 NCOA2Q15596 1464 aa17.16■□□□□ 0.34
PVT1-209ENST00000520913 MAP3K1Q13233 1512 aa17.13■□□□□ 0.33
PVT1-209ENST00000520913 CAMSAP2Q08AD1 1489 aa17.12■□□□□ 0.33
PVT1-209ENST00000520913 SETD1BQ9UPS6 1966 aaKnown RBP17.12■□□□□ 0.33
PVT1-209ENST00000520913 SPAG9O60271 1321 aaKnown RBP17.12■□□□□ 0.33
PVT1-209ENST00000520913 LRRC9Q6ZRR7 1453 aa17.12■□□□□ 0.33
PVT1-209ENST00000520913 CLTCQ00610 1675 aaKnown RBP17.11■□□□□ 0.33
PVT1-209ENST00000520913 LOC105371045A0A1W2PR82 267 aa17.11■□□□□ 0.33
PVT1-209ENST00000520913 HNRNPMP52272 730 aaKnown RBP eCLIP17.1■□□□□ 0.331e-6■■■■□ 21.5
PVT1-209ENST00000520913 PLPPR3Q6T4P5 718 aa17.1■□□□□ 0.33
PVT1-209ENST00000520913 MBD5Q9P267 1494 aa17.1■□□□□ 0.33
PVT1-209ENST00000520913 ARHGEF5Q12774 1597 aa17.1■□□□□ 0.33
PVT1-209ENST00000520913 CNTLNQ9NXG0 1405 aa17.09■□□□□ 0.33
PVT1-209ENST00000520913 A2MP01023 1474 aa17.09■□□□□ 0.33
PVT1-209ENST00000520913 CCDC141Q6ZP82 1450 aa17.09■□□□□ 0.33
PVT1-209ENST00000520913 RTEL1-TNFRSF6BF6WH68 1400 aa17.05■□□□□ 0.32
PVT1-209ENST00000520913 UHRF1BP1Q6BDS2 1440 aa17.04■□□□□ 0.32
PVT1-209ENST00000520913 ZNF644Q9H582 1327 aaPredicted RBP17.04■□□□□ 0.32
PVT1-209ENST00000520913 ESF1Q9H501 851 aaKnown RBP17.04■□□□□ 0.32
PVT1-209ENST00000520913 CROCC2H7BZ55 1655 aa17.04■□□□□ 0.32
PVT1-209ENST00000520913 ZNF142P52746 1687 aaPredicted RBP17.03■□□□□ 0.32
PVT1-209ENST00000520913 MAST1Q9Y2H9 1570 aa17.02■□□□□ 0.32
PVT1-209ENST00000520913 STRCQ7RTU9 1775 aa17.02■□□□□ 0.32
PVT1-209ENST00000520913 MYO3AQ8NEV4 1616 aa17.02■□□□□ 0.31
PVT1-209ENST00000520913 FAM135AQ9P2D6 1515 aa17.01■□□□□ 0.31
PVT1-209ENST00000520913 CEBPAP49715 358 aaPredicted RBP17■□□□□ 0.31
PVT1-209ENST00000520913 HSPA2P54652 639 aa17■□□□□ 0.31
PVT1-209ENST00000520913 MYOM3Q5VTT5 1437 aa16.99■□□□□ 0.31
PVT1-209ENST00000520913 EIF2AK4Q9P2K8 1649 aaKnown RBP16.98■□□□□ 0.31
PVT1-209ENST00000520913 NPATQ14207 1427 aa16.97■□□□□ 0.31
PVT1-209ENST00000520913 MIA2Q96PC5 1412 aa16.97■□□□□ 0.31
PVT1-209ENST00000520913 ZC3H13Q5T200 1668 aaKnown RBP16.97■□□□□ 0.31
PVT1-209ENST00000520913 RNF17Q9BXT8 1623 aaKnown RBP16.96■□□□□ 0.31
PVT1-209ENST00000520913 PTPN23Q9H3S7 1636 aa16.96■□□□□ 0.3
PVT1-209ENST00000520913 KDM5DQ9BY66 1539 aa16.96■□□□□ 0.3
PVT1-209ENST00000520913 RSPH4AQ5TD94 716 aa16.95■□□□□ 0.3
PVT1-209ENST00000520913 DHX29Q7Z478 1369 aaKnown RBP16.94■□□□□ 0.3
PVT1-209ENST00000520913 ILDR1Q86SU0 546 aaPredicted RBP16.94■□□□□ 0.3
PVT1-209ENST00000520913 KANK4Q5T7N3 995 aaPredicted RBP16.93■□□□□ 0.3
PVT1-209ENST00000520913 CEP170BQ9Y4F5 1589 aaPredicted RBP16.93■□□□□ 0.3
PVT1-209ENST00000520913 ZMYM3Q14202 1370 aa16.92■□□□□ 0.3
PVT1-209ENST00000520913 DNMT1P26358 1616 aaKnown RBP16.92■□□□□ 0.3
PVT1-209ENST00000520913 APLP2Q06481 763 aa16.9■□□□□ 0.3
PVT1-209ENST00000520913 GGT6Q6P531 493 aa16.9■□□□□ 0.3
PVT1-209ENST00000520913 SHANK2Q9UPX8 1470 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms