RNA–Protein interactions for RNA: ENST00000520828.5

PTK2-223, Transcript of protein tyrosine kinase 2, human

TSL 4

Gene PTK2, Length 574 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTK2-223	ENST00000520828	EFCAB5	A4FU69	1503 aa		13.78	□□□□□ -0.2
PTK2-223	ENST00000520828	ZMYM4	Q5VZL5	1548 aa		13.78	□□□□□ -0.2
PTK2-223	ENST00000520828	MAGI2	Q86UL8	1455 aa		13.77	□□□□□ -0.21
PTK2-223	ENST00000520828	YEATS2	Q9ULM3	1422 aa		13.76	□□□□□ -0.21
PTK2-223	ENST00000520828	TTC37	Q6PGP7	1564 aa		13.75	□□□□□ -0.21
PTK2-223	ENST00000520828	DMRT2	Q9Y5R5	561 aa		13.75	□□□□□ -0.21
PTK2-223	ENST00000520828	FER1L4	A9Z1Z3	1794 aa		13.74	□□□□□ -0.21
PTK2-223	ENST00000520828	SIGLEC1	Q9BZZ2	1709 aa		13.73	□□□□□ -0.21
PTK2-223	ENST00000520828	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	13.73	□□□□□ -0.21	2e-6	■■□□□ 11.5
PTK2-223	ENST00000520828	HECW1	Q76N89	1606 aa		13.72	□□□□□ -0.21
PTK2-223	ENST00000520828	PREX1	Q8TCU6	1659 aa		13.71	□□□□□ -0.21
PTK2-223	ENST00000520828	SPATA31D1	Q6ZQQ2	1576 aa		13.71	□□□□□ -0.22
PTK2-223	ENST00000520828	ARHGEF12	Q9NZN5	1544 aa		13.7	□□□□□ -0.22
PTK2-223	ENST00000520828	RANGAP1	P46060	587 aa	Predicted RBP	13.7	□□□□□ -0.22
PTK2-223	ENST00000520828	SCAPER	Q9BY12	1400 aa		13.7	□□□□□ -0.22
PTK2-223	ENST00000520828	ATP10A	O60312	1499 aa		13.69	□□□□□ -0.22
PTK2-223	ENST00000520828	CEBPA	P49715	358 aa	Predicted RBP	13.69	□□□□□ -0.22
PTK2-223	ENST00000520828	C9orf84	Q5VXU9	1444 aa		13.68	□□□□□ -0.22
PTK2-223	ENST00000520828	UHRF1BP1	Q6BDS2	1440 aa		13.67	□□□□□ -0.22
PTK2-223	ENST00000520828	CSRNP3	Q8WYN3	585 aa		13.67	□□□□□ -0.22
PTK2-223	ENST00000520828	PLCH2	O75038	1416 aa		13.65	□□□□□ -0.22
PTK2-223	ENST00000520828	STRC	Q7RTU9	1775 aa		13.65	□□□□□ -0.22
PTK2-223	ENST00000520828	PTPRT	O14522	1441 aa		13.64	□□□□□ -0.23
PTK2-223	ENST00000520828	EFCAB2	Q5VUJ9	269 aa		13.63	□□□□□ -0.23
PTK2-223	ENST00000520828	CDK13	Q14004	1512 aa	Known RBP	13.6	□□□□□ -0.23
PTK2-223	ENST00000520828	MYT1L	Q9UL68	1186 aa		13.6	□□□□□ -0.23
PTK2-223	ENST00000520828	IQSEC2	Q5JU85	1478 aa		13.59	□□□□□ -0.23
PTK2-223	ENST00000520828	ZNF518A	Q6AHZ1	1483 aa		13.59	□□□□□ -0.23
PTK2-223	ENST00000520828	ESF1	Q9H501	851 aa	Known RBP	13.58	□□□□□ -0.24
PTK2-223	ENST00000520828	AFAP1	Q8N556	730 aa		13.57	□□□□□ -0.24
PTK2-223	ENST00000520828	LTBP4	Q8N2S1	1624 aa		13.57	□□□□□ -0.24
PTK2-223	ENST00000520828	CDK11A	Q9UQ88	783 aa	Predicted RBP	13.56	□□□□□ -0.24
PTK2-223	ENST00000520828	SETD1B	Q9UPS6	1966 aa	Known RBP	13.56	□□□□□ -0.24
PTK2-223	ENST00000520828	MYO5C	Q9NQX4	1742 aa		13.56	□□□□□ -0.24
PTK2-223	ENST00000520828	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.55	□□□□□ -0.24
PTK2-223	ENST00000520828	TRAPPC8	Q9Y2L5	1435 aa		13.55	□□□□□ -0.24
PTK2-223	ENST00000520828	KDM5C	P41229	1560 aa		13.54	□□□□□ -0.24
PTK2-223	ENST00000520828	EEA1	Q15075	1411 aa		13.54	□□□□□ -0.24
PTK2-223	ENST00000520828	NCOA1	Q15788	1441 aa		13.54	□□□□□ -0.24
PTK2-223	ENST00000520828	ARHGAP5	Q13017	1502 aa		13.54	□□□□□ -0.24
PTK2-223	ENST00000520828	RERE	Q9P2R6	1566 aa		13.54	□□□□□ -0.24
PTK2-223	ENST00000520828	DIP2C	Q9Y2E4	1556 aa		13.54	□□□□□ -0.24
PTK2-223	ENST00000520828	C3	P01024	1663 aa		13.53	□□□□□ -0.24
PTK2-223	ENST00000520828	KIF14	Q15058	1648 aa		13.51	□□□□□ -0.25
PTK2-223	ENST00000520828	UBAP1L	F5GYI3	381 aa		13.51	□□□□□ -0.25
PTK2-223	ENST00000520828	AGL	P35573	1532 aa		13.5	□□□□□ -0.25
PTK2-223	ENST00000520828	MLH3	Q9UHC1	1453 aa		13.5	□□□□□ -0.25
PTK2-223	ENST00000520828	CNTLN	Q9NXG0	1405 aa		13.5	□□□□□ -0.25
PTK2-223	ENST00000520828	ABCA6	Q8N139	1617 aa		13.5	□□□□□ -0.25
PTK2-223	ENST00000520828	CLIP1	P30622	1438 aa		13.49	□□□□□ -0.25
PTK2-223	ENST00000520828	FMN1	Q68DA7	1419 aa		13.49	□□□□□ -0.25
PTK2-223	ENST00000520828	TRO	Q12816	1431 aa	Predicted RBP	13.48	□□□□□ -0.25
PTK2-223	ENST00000520828	CAMSAP1	Q5T5Y3	1602 aa		13.47	□□□□□ -0.25
PTK2-223	ENST00000520828	NPAT	Q14207	1427 aa		13.46	□□□□□ -0.26
PTK2-223	ENST00000520828	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.45	□□□□□ -0.26
PTK2-223	ENST00000520828	NCKAP5L	Q9HCH0	1330 aa		13.45	□□□□□ -0.26
PTK2-223	ENST00000520828	ABCC1	P33527	1531 aa		13.43	□□□□□ -0.26
PTK2-223	ENST00000520828	PKD2	Q13563	968 aa		13.42	□□□□□ -0.26
PTK2-223	ENST00000520828	ZMYM3	Q14202	1370 aa		13.42	□□□□□ -0.26
PTK2-223	ENST00000520828	CDC42BPB	Q9Y5S2	1711 aa		13.41	□□□□□ -0.26
PTK2-223	ENST00000520828	MROH2A	A6NES4	1674 aa		13.4	□□□□□ -0.26
PTK2-223	ENST00000520828	UBTF	P17480	764 aa	Known RBP	13.4	□□□□□ -0.26
PTK2-223	ENST00000520828	PLA2R1	Q13018	1463 aa		13.4	□□□□□ -0.26
PTK2-223	ENST00000520828	ITSN2	Q9NZM3	1697 aa		13.4	□□□□□ -0.26
PTK2-223	ENST00000520828	PREX2	Q70Z35	1606 aa		13.39	□□□□□ -0.27
PTK2-223	ENST00000520828	ARHGAP35	Q9NRY4	1499 aa		13.39	□□□□□ -0.27
PTK2-223	ENST00000520828	KIDINS220	Q9ULH0	1771 aa		13.39	□□□□□ -0.27
PTK2-223	ENST00000520828	SCAF1	Q9H7N4	1312 aa	Known RBP	13.39	□□□□□ -0.27
PTK2-223	ENST00000520828	EHMT2	Q96KQ7	1210 aa		13.38	□□□□□ -0.27
PTK2-223	ENST00000520828	TCOF1	Q13428	1488 aa	Known RBP	13.37	□□□□□ -0.27
PTK2-223	ENST00000520828	HSPA1L	P34931	641 aa		13.37	□□□□□ -0.27
PTK2-223	ENST00000520828	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.37	□□□□□ -0.27
PTK2-223	ENST00000520828	MED1	Q15648	1581 aa	Predicted RBP	13.37	□□□□□ -0.27
PTK2-223	ENST00000520828	MYO3A	Q8NEV4	1616 aa		13.36	□□□□□ -0.27
PTK2-223	ENST00000520828	PIP4K2B	P78356	416 aa		13.36	□□□□□ -0.27
PTK2-223	ENST00000520828	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.36	□□□□□ -0.27
PTK2-223	ENST00000520828	SPAG9	O60271	1321 aa	Known RBP	13.36	□□□□□ -0.27
PTK2-223	ENST00000520828	ZNF142	P52746	1687 aa	Predicted RBP	13.35	□□□□□ -0.27
PTK2-223	ENST00000520828	TOM1	O60784	492 aa		13.35	□□□□□ -0.27
PTK2-223	ENST00000520828	PTPRK	Q15262	1439 aa		13.35	□□□□□ -0.27
PTK2-223	ENST00000520828	SAMD9L	Q8IVG5	1584 aa		13.35	□□□□□ -0.27
PTK2-223	ENST00000520828	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.34	□□□□□ -0.27
PTK2-223	ENST00000520828	CCDC18	Q5T9S5	1454 aa		13.33	□□□□□ -0.28
PTK2-223	ENST00000520828	CLTC	Q00610	1675 aa	Known RBP	13.33	□□□□□ -0.28
PTK2-223	ENST00000520828	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.33	□□□□□ -0.28
PTK2-223	ENST00000520828	LRRIQ1	Q96JM4	1722 aa		13.33	□□□□□ -0.28
PTK2-223	ENST00000520828	SYCP2	Q9BX26	1530 aa		13.31	□□□□□ -0.28
PTK2-223	ENST00000520828	GGT6	Q6P531	493 aa		13.31	□□□□□ -0.28
PTK2-223	ENST00000520828	A2M	P01023	1474 aa		13.3	□□□□□ -0.28
PTK2-223	ENST00000520828	CPS1	P31327	1500 aa		13.3	□□□□□ -0.28
PTK2-223	ENST00000520828	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.3	□□□□□ -0.28	1e-6	■■■■□ 23.4
PTK2-223	ENST00000520828	CDC42BPA	Q5VT25	1732 aa		13.3	□□□□□ -0.28
PTK2-223	ENST00000520828	A2ML1	A8K2U0	1454 aa		13.29	□□□□□ -0.28
PTK2-223	ENST00000520828	ATP7A	Q04656	1500 aa		13.29	□□□□□ -0.28
PTK2-223	ENST00000520828	PLXNC1	O60486	1568 aa		13.29	□□□□□ -0.28
PTK2-223	ENST00000520828	CASKIN1	Q8WXD9	1431 aa		13.29	□□□□□ -0.28
PTK2-223	ENST00000520828	SHANK2	Q9UPX8	1470 aa		13.28	□□□□□ -0.28
PTK2-223	ENST00000520828	DNMT1	P26358	1616 aa	Known RBP	13.26	□□□□□ -0.29
PTK2-223	ENST00000520828	PLEKHH2	Q8IVE3	1493 aa		13.26	□□□□□ -0.29
PTK2-223	ENST00000520828	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.26	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms