RNA–Protein interactions for RNA: ENST00000520828.5

PTK2-223, Transcript of protein tyrosine kinase 2, humanhuman

TSL 4

Gene PTK2, Length 574 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTK2-223ENST00000520828 NISCHQ9Y2I1 1504 aa20.67■□□□□ 0.9
PTK2-223ENST00000520828 AEBP2Q6ZN18 517 aaPredicted RBP19.71■□□□□ 0.75
PTK2-223ENST00000520828 ABCC9O60706 1549 aa19.12■□□□□ 0.65
PTK2-223ENST00000520828 CCDC180Q9P1Z9 1646 aa18.71■□□□□ 0.58
PTK2-223ENST00000520828 CHIC1Q5VXU3 224 aa18.68■□□□□ 0.58
PTK2-223ENST00000520828 DNAJC5BQ9UF47 199 aa18.27■□□□□ 0.52
PTK2-223ENST00000520828 RB1CC1Q8TDY2 1594 aa18.02■□□□□ 0.48
PTK2-223ENST00000520828 NACADO15069 1562 aa17.8■□□□□ 0.44
PTK2-223ENST00000520828 PABPN1Q86U42 306 aaKnown RBP eCLIP17.75■□□□□ 0.43
PTK2-223ENST00000520828 DCAF8L2P0C7V8 631 aa17.67■□□□□ 0.42
PTK2-223ENST00000520828 UNC13AQ9UPW8 1703 aa17.53■□□□□ 0.4
PTK2-223ENST00000520828 BICRAQ9NZM4 1560 aa17.48■□□□□ 0.39
PTK2-223ENST00000520828 MYO15BQ96JP2 1530 aa17.42■□□□□ 0.38
PTK2-223ENST00000520828 CECR2Q9BXF3 1484 aa17.28■□□□□ 0.36
PTK2-223ENST00000520828 SHROOM4Q9ULL8 1493 aa17.25■□□□□ 0.35
PTK2-223ENST00000520828 CC2D2AQ9P2K1 1620 aa17.23■□□□□ 0.35
PTK2-223ENST00000520828 EIF4G1Q04637 1599 aaKnown RBP17.11■□□□□ 0.33
PTK2-223ENST00000520828 DNAJC5Q9H3Z4 198 aa17.1■□□□□ 0.33
PTK2-223ENST00000520828 DCAF1Q9Y4B6 1507 aa17.05■□□□□ 0.32
PTK2-223ENST00000520828 ZCCHC6Q5VYS8 1495 aaKnown RBP17.04■□□□□ 0.32
PTK2-223ENST00000520828 SCRIBQ14160 1630 aa17.03■□□□□ 0.32
PTK2-223ENST00000520828 SENP3Q9H4L4 574 aaPredicted RBP16.83■□□□□ 0.28
PTK2-223ENST00000520828 CUX2O14529 1486 aa16.65■□□□□ 0.26
PTK2-223ENST00000520828 PHF23Q9BUL5 403 aaPredicted RBP16.59■□□□□ 0.25
PTK2-223ENST00000520828 ERCC6Q03468 1493 aa16.56■□□□□ 0.24
PTK2-223ENST00000520828 NCAPD3P42695 1498 aa16.44■□□□□ 0.22
PTK2-223ENST00000520828 ATAD2BQ9ULI0 1458 aa16.33■□□□□ 0.2
PTK2-223ENST00000520828 NESP48681 1621 aa16.3■□□□□ 0.2
PTK2-223ENST00000520828 SMARCA2P51531 1590 aa16.27■□□□□ 0.2
PTK2-223ENST00000520828 HMGXB3Q12766 1538 aa16.27■□□□□ 0.2
PTK2-223ENST00000520828 TRIM41Q8WV44 630 aa16.21■□□□□ 0.19
PTK2-223ENST00000520828 SMARCA4P51532 1647 aa16.2■□□□□ 0.18
PTK2-223ENST00000520828 THOC2Q8NI27 1593 aaKnown RBP16.2■□□□□ 0.18
PTK2-223ENST00000520828 BAZ1BQ9UIG0 1483 aaKnown RBP16.16■□□□□ 0.18
PTK2-223ENST00000520828 LAMC3Q9Y6N6 1575 aa16.13■□□□□ 0.17
PTK2-223ENST00000520828 PDS5BQ9NTI5 1447 aa16.09■□□□□ 0.17
PTK2-223ENST00000520828 BAZ1AQ9NRL2 1556 aaPredicted RBP16.08■□□□□ 0.16
PTK2-223ENST00000520828 KIF21AQ7Z4S6 1674 aa16.05■□□□□ 0.16
PTK2-223ENST00000520828 PEG3Q9GZU2 1588 aa16.04■□□□□ 0.16
PTK2-223ENST00000520828 MRC2Q9UBG0 1479 aa15.95■□□□□ 0.14
PTK2-223ENST00000520828 CADPSQ9ULU8 1353 aa15.93■□□□□ 0.14
PTK2-223ENST00000520828 MROH2BQ7Z745 1585 aa15.92■□□□□ 0.14
PTK2-223ENST00000520828 WDR62O43379 1518 aa15.91■□□□□ 0.14
PTK2-223ENST00000520828 OSCARQ8IYS5 282 aa15.85■□□□□ 0.13
PTK2-223ENST00000520828 CEP164Q9UPV0 1460 aa15.81■□□□□ 0.12
PTK2-223ENST00000520828 FANCD2Q9BXW9 1451 aa15.75■□□□□ 0.11
PTK2-223ENST00000520828 FOXD1Q16676 465 aa15.69■□□□□ 0.1
PTK2-223ENST00000520828 WIZO95785 1651 aa15.69■□□□□ 0.1
PTK2-223ENST00000520828 CFTRP13569 1480 aa15.65■□□□□ 0.1
PTK2-223ENST00000520828 RIMBP3CA6NJZ7 1639 aa15.64■□□□□ 0.09
PTK2-223ENST00000520828 RIMBP3BA6NNM3 1639 aa15.64■□□□□ 0.09
PTK2-223ENST00000520828 RIMBP3Q9UFD9 1639 aa15.64■□□□□ 0.09
PTK2-223ENST00000520828 URB2Q14146 1524 aaKnown RBP15.63■□□□□ 0.09
PTK2-223ENST00000520828 ARHGEF11O15085 1522 aa15.56■□□□□ 0.08
PTK2-223ENST00000520828 IFT140Q96RY7 1462 aa15.51■□□□□ 0.07
PTK2-223ENST00000520828 ZNF608Q9ULD9 1512 aaPredicted RBP15.5■□□□□ 0.07
PTK2-223ENST00000520828 CYB5RLQ6IPT4 315 aa15.5■□□□□ 0.07
PTK2-223ENST00000520828 TOP2AP11388 1531 aaKnown RBP15.48■□□□□ 0.07
PTK2-223ENST00000520828 TRHP20396 242 aaPredicted RBP15.48■□□□□ 0.07
PTK2-223ENST00000520828 RSF1Q96T23 1441 aaPredicted RBP15.45■□□□□ 0.06
PTK2-223ENST00000520828 PRDM2Q13029 1718 aa15.4■□□□□ 0.06
PTK2-223ENST00000520828 TOPBP1Q92547 1522 aa15.39■□□□□ 0.05
PTK2-223ENST00000520828 EIF4G3O43432 1585 aaKnown RBP15.39■□□□□ 0.05
PTK2-223ENST00000520828 ARAP1Q96P48 1450 aa15.38■□□□□ 0.05
PTK2-223ENST00000520828 ABCC8Q09428 1581 aa15.36■□□□□ 0.05
PTK2-223ENST00000520828 FBLN2P98095 1184 aa15.34■□□□□ 0.05
PTK2-223ENST00000520828 CHD1O14646 1710 aa15.33■□□□□ 0.04
PTK2-223ENST00000520828 AQRO60306 1485 aaKnown RBP eCLIP15.33■□□□□ 0.043e-6■■■■□ 24.7
PTK2-223ENST00000520828 CCDC88BA6NC98 1476 aa15.32■□□□□ 0.04
PTK2-223ENST00000520828 DNMBPQ6XZF7 1577 aa15.31■□□□□ 0.04
PTK2-223ENST00000520828 TARBP1Q13395 1621 aaKnown RBP15.27■□□□□ 0.03
PTK2-223ENST00000520828 POLA1P09884 1462 aaPredicted RBP15.21■□□□□ 0.03
PTK2-223ENST00000520828 RAD54L2Q9Y4B4 1467 aa15.17■□□□□ 0.02
PTK2-223ENST00000520828 TDRD9Q8NDG6 1382 aaKnown RBP15.17■□□□□ 0.02
PTK2-223ENST00000520828 CLASP1Q7Z460 1538 aa15.17■□□□□ 0.02
PTK2-223ENST00000520828 SNAPC4Q5SXM2 1469 aa15.16■□□□□ 0.02
PTK2-223ENST00000520828 CHMP7Q8WUX9 453 aaPredicted RBP15.16■□□□□ 0.02
PTK2-223ENST00000520828 SOGA1O94964 1423 aa15.16■□□□□ 0.02
PTK2-223ENST00000520828 SYNJ1O43426 1573 aa15.15■□□□□ 0.02
PTK2-223ENST00000520828 WDR97A6NE52 1622 aa15.11■□□□□ 0.01
PTK2-223ENST00000520828 MAGI1Q96QZ7 1491 aaPredicted RBP15.11■□□□□ 0.01
PTK2-223ENST00000520828 GRIN2BQ13224 1484 aa15.08■□□□□ 0
PTK2-223ENST00000520828 SYNJ2O15056 1496 aa15.07■□□□□ 0
PTK2-223ENST00000520828 FGD5Q6ZNL6 1462 aa15.07■□□□□ 0
PTK2-223ENST00000520828 GAPVD1Q14C86 1478 aa15.06■□□□□ 0
PTK2-223ENST00000520828 CUX1P39880 1505 aa14.98□□□□□ -0.01
PTK2-223ENST00000520828 PBRM1Q86U86 1689 aa14.93□□□□□ -0.02
PTK2-223ENST00000520828 PLPPR3Q6T4P5 718 aa14.9□□□□□ -0.02
PTK2-223ENST00000520828 ERCC6L2Q5T890 1561 aa14.89□□□□□ -0.03
PTK2-223ENST00000520828 GRIN2AQ12879 1464 aa14.87□□□□□ -0.03
PTK2-223ENST00000520828 ABCA10Q8WWZ4 1543 aa14.87□□□□□ -0.03
PTK2-223ENST00000520828 ABCA5Q8WWZ7 1642 aa14.86□□□□□ -0.03
PTK2-223ENST00000520828 CEP170Q5SW79 1584 aa14.85□□□□□ -0.03
PTK2-223ENST00000520828 NUP160Q12769 1436 aa14.83□□□□□ -0.03
PTK2-223ENST00000520828 ADAMTS12P58397 1594 aa14.8□□□□□ -0.04
PTK2-223ENST00000520828 KIF13AQ9H1H9 1805 aa14.78□□□□□ -0.04
PTK2-223ENST00000520828 SHROOM2Q13796 1616 aa14.78□□□□□ -0.04
PTK2-223ENST00000520828 FHAD1B1AJZ9 1412 aa14.76□□□□□ -0.05
PTK2-223ENST00000520828 WRNQ14191 1432 aaPredicted RBP eCLIP14.75□□□□□ -0.05
PTK2-223ENST00000520828 FAM69CQ0P6D2 419 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms