RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, human

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SQSTM1-215	ENST00000514093	MAGI2	Q86UL8	1455 aa		34.12	■■■■□ 3.05
SQSTM1-215	ENST00000514093	PLCH2	O75038	1416 aa		34.07	■■■■□ 3.04
SQSTM1-215	ENST00000514093	FER1L4	A9Z1Z3	1794 aa		34.07	■■■■□ 3.04
SQSTM1-215	ENST00000514093	ATP1B4	Q9UN42	357 aa	Predicted RBP	34.06	■■■■□ 3.04
SQSTM1-215	ENST00000514093	CEBPA	P49715	358 aa	Predicted RBP	34.02	■■■■□ 3.04
SQSTM1-215	ENST00000514093	EHMT2	Q96KQ7	1210 aa		34.02	■■■■□ 3.04
SQSTM1-215	ENST00000514093	ATP10A	O60312	1499 aa		34.01	■■■■□ 3.03
SQSTM1-215	ENST00000514093	EFCAB2	Q5VUJ9	269 aa		33.97	■■■■□ 3.03
SQSTM1-215	ENST00000514093	ARHGEF12	Q9NZN5	1544 aa		33.96	■■■■□ 3.03
SQSTM1-215	ENST00000514093	C9orf84	Q5VXU9	1444 aa		33.96	■■■■□ 3.03
SQSTM1-215	ENST00000514093	AFAP1	Q8N556	730 aa		33.89	■■■■□ 3.02
SQSTM1-215	ENST00000514093	MYO5C	Q9NQX4	1742 aa		33.88	■■■■□ 3.01
SQSTM1-215	ENST00000514093	PREX1	Q8TCU6	1659 aa		33.88	■■■■□ 3.01
SQSTM1-215	ENST00000514093	UBTF	P17480	764 aa	Known RBP	33.87	■■■■□ 3.01
SQSTM1-215	ENST00000514093	MYT1L	Q9UL68	1186 aa		33.86	■■■■□ 3.01
SQSTM1-215	ENST00000514093	CDK11A	Q9UQ88	783 aa	Predicted RBP	33.85	■■■■□ 3.01
SQSTM1-215	ENST00000514093	KIF14	Q15058	1648 aa		33.85	■■■■□ 3.01
SQSTM1-215	ENST00000514093	FMN1	Q68DA7	1419 aa		33.83	■■■■□ 3.01
SQSTM1-215	ENST00000514093	ZNF518A	Q6AHZ1	1483 aa		33.81	■■■■□ 3
SQSTM1-215	ENST00000514093	ARHGAP5	Q13017	1502 aa		33.79	■■■■□ 3
SQSTM1-215	ENST00000514093	STRC	Q7RTU9	1775 aa		33.79	■■■■□ 3
SQSTM1-215	ENST00000514093	ARHGAP35	Q9NRY4	1499 aa		33.78	■■■■□ 3
SQSTM1-215	ENST00000514093	DMRT2	Q9Y5R5	561 aa		33.78	■■■■□ 3
SQSTM1-215	ENST00000514093	TRO	Q12816	1431 aa	Predicted RBP	33.76	■■■□□ 2.99
SQSTM1-215	ENST00000514093	UHRF1BP1	Q6BDS2	1440 aa		33.76	■■■□□ 2.99
SQSTM1-215	ENST00000514093	KDM5C	P41229	1560 aa		33.74	■■■□□ 2.99
SQSTM1-215	ENST00000514093	DISP3	Q9P2K9	1392 aa		33.73	■■■□□ 2.99
SQSTM1-215	ENST00000514093	ILDR2	Q71H61	639 aa		33.72	■■■□□ 2.99
SQSTM1-215	ENST00000514093	DIP2C	Q9Y2E4	1556 aa		33.72	■■■□□ 2.99
SQSTM1-215	ENST00000514093	CLIP1	P30622	1438 aa		33.69	■■■□□ 2.98
SQSTM1-215	ENST00000514093	SETD1B	Q9UPS6	1966 aa	Known RBP	33.65	■■■□□ 2.98
SQSTM1-215	ENST00000514093	ABCA6	Q8N139	1617 aa		33.65	■■■□□ 2.98
SQSTM1-215	ENST00000514093	LRRIQ1	Q96JM4	1722 aa		33.65	■■■□□ 2.98
SQSTM1-215	ENST00000514093	ESF1	Q9H501	851 aa	Known RBP	33.64	■■■□□ 2.98
SQSTM1-215	ENST00000514093	CDC42BPB	Q9Y5S2	1711 aa		33.63	■■■□□ 2.97
SQSTM1-215	ENST00000514093	C3	P01024	1663 aa		33.63	■■■□□ 2.97
SQSTM1-215	ENST00000514093	TRAPPC8	Q9Y2L5	1435 aa		33.62	■■■□□ 2.97
SQSTM1-215	ENST00000514093	MLH3	Q9UHC1	1453 aa		33.62	■■■□□ 2.97
SQSTM1-215	ENST00000514093	RERE	Q9P2R6	1566 aa		33.61	■■■□□ 2.97
SQSTM1-215	ENST00000514093	PTPRT	O14522	1441 aa		33.58	■■■□□ 2.97
SQSTM1-215	ENST00000514093	AGL	P35573	1532 aa		33.54	■■■□□ 2.96
SQSTM1-215	ENST00000514093	ABCC1	P33527	1531 aa		33.53	■■■□□ 2.96
SQSTM1-215	ENST00000514093	SOCS7	O14512	581 aa		33.53	■■■□□ 2.96
SQSTM1-215	ENST00000514093	PREX2	Q70Z35	1606 aa		33.52	■■■□□ 2.96
SQSTM1-215	ENST00000514093	ITSN2	Q9NZM3	1697 aa		33.49	■■■□□ 2.95
SQSTM1-215	ENST00000514093	KIDINS220	Q9ULH0	1771 aa		33.47	■■■□□ 2.95
SQSTM1-215	ENST00000514093	LTBP4	Q8N2S1	1624 aa		33.47	■■■□□ 2.95
SQSTM1-215	ENST00000514093	ZNF777	Q9ULD5	760 aa	Predicted RBP	33.46	■■■□□ 2.95
SQSTM1-215	ENST00000514093	NCOA1	Q15788	1441 aa		33.45	■■■□□ 2.94
SQSTM1-215	ENST00000514093	CNTLN	Q9NXG0	1405 aa		33.43	■■■□□ 2.94
SQSTM1-215	ENST00000514093	CASKIN1	Q8WXD9	1431 aa		33.42	■■■□□ 2.94
SQSTM1-215	ENST00000514093	CCDC18	Q5T9S5	1454 aa		33.41	■■■□□ 2.94
SQSTM1-215	ENST00000514093	SPATA31D1	Q6ZQQ2	1576 aa		33.41	■■■□□ 2.94
SQSTM1-215	ENST00000514093	CDC42BPA	Q5VT25	1732 aa		33.39	■■■□□ 2.94
SQSTM1-215	ENST00000514093	ZMYM3	Q14202	1370 aa		33.37	■■■□□ 2.93
SQSTM1-215	ENST00000514093	NCKAP5L	Q9HCH0	1330 aa		33.37	■■■□□ 2.93
SQSTM1-215	ENST00000514093	CAMSAP1	Q5T5Y3	1602 aa		33.37	■■■□□ 2.93
SQSTM1-215	ENST00000514093	SAMD9L	Q8IVG5	1584 aa		33.36	■■■□□ 2.93
SQSTM1-215	ENST00000514093	HNRNPM	P52272	730 aa	Known RBP eCLIP	33.36	■■■□□ 2.93	4e-8	■■■■□ 21.3
SQSTM1-215	ENST00000514093	CHIC1	Q5VXU3	224 aa		33.36	■■■□□ 2.93
SQSTM1-215	ENST00000514093	SPAG9	O60271	1321 aa	Known RBP	33.33	■■■□□ 2.93
SQSTM1-215	ENST00000514093	NPAT	Q14207	1427 aa		33.32	■■■□□ 2.92
SQSTM1-215	ENST00000514093	IQSEC2	Q5JU85	1478 aa		33.31	■■■□□ 2.92
SQSTM1-215	ENST00000514093	SYCP2	Q9BX26	1530 aa		33.31	■■■□□ 2.92
SQSTM1-215	ENST00000514093	SUPT6H	Q7KZ85	1726 aa	Known RBP	33.3	■■■□□ 2.92
SQSTM1-215	ENST00000514093	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	33.29	■■■□□ 2.92
SQSTM1-215	ENST00000514093	MROH2A	A6NES4	1674 aa		33.28	■■■□□ 2.92
SQSTM1-215	ENST00000514093	GPATCH8	Q9UKJ3	1502 aa	Known RBP	33.27	■■■□□ 2.92
SQSTM1-215	ENST00000514093	CLTC	Q00610	1675 aa	Known RBP	33.23	■■■□□ 2.91
SQSTM1-215	ENST00000514093	UBAP1L	F5GYI3	381 aa		33.23	■■■□□ 2.91
SQSTM1-215	ENST00000514093	GGT6	Q6P531	493 aa		33.23	■■■□□ 2.91
SQSTM1-215	ENST00000514093	FYCO1	Q9BQS8	1478 aa		33.21	■■■□□ 2.91
SQSTM1-215	ENST00000514093	ATP7A	Q04656	1500 aa		33.2	■■■□□ 2.91
SQSTM1-215	ENST00000514093	CFDP1	Q9UEE9	299 aa	Predicted RBP	33.2	■■■□□ 2.91
SQSTM1-215	ENST00000514093	A2M	P01023	1474 aa		33.18	■■■□□ 2.9
SQSTM1-215	ENST00000514093	PTPRK	Q15262	1439 aa		33.17	■■■□□ 2.9
SQSTM1-215	ENST00000514093	MYO3A	Q8NEV4	1616 aa		33.17	■■■□□ 2.9
SQSTM1-215	ENST00000514093	PKD2	Q13563	968 aa		33.16	■■■□□ 2.9
SQSTM1-215	ENST00000514093	PLXNC1	O60486	1568 aa		33.14	■■■□□ 2.9
SQSTM1-215	ENST00000514093	KIAA1107	Q9UPP5	1409 aa		33.14	■■■□□ 2.9
SQSTM1-215	ENST00000514093	INO80	Q9ULG1	1556 aa	Predicted RBP	33.13	■■■□□ 2.89
SQSTM1-215	ENST00000514093	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.13	■■■□□ 2.89
SQSTM1-215	ENST00000514093	PLA2R1	Q13018	1463 aa		33.12	■■■□□ 2.89
SQSTM1-215	ENST00000514093	CCNB3	Q8WWL7	1395 aa		33.12	■■■□□ 2.89
SQSTM1-215	ENST00000514093	ZNF142	P52746	1687 aa	Predicted RBP	33.11	■■■□□ 2.89
SQSTM1-215	ENST00000514093	TCOF1	Q13428	1488 aa	Known RBP	33.1	■■■□□ 2.89
SQSTM1-215	ENST00000514093	PLEKHH2	Q8IVE3	1493 aa		33.1	■■■□□ 2.89
SQSTM1-215	ENST00000514093	PPP6R1	Q9UPN7	881 aa		33.08	■■■□□ 2.89
SQSTM1-215	ENST00000514093	ZNF644	Q9H582	1327 aa	Predicted RBP	33.07	■■■□□ 2.88
SQSTM1-215	ENST00000514093	MTUS2	Q5JR59	1369 aa		33.01	■■■□□ 2.88
SQSTM1-215	ENST00000514093	ADGB	Q8N7X0	1667 aa		32.98	■■■□□ 2.87
SQSTM1-215	ENST00000514093	SCAF1	Q9H7N4	1312 aa	Known RBP	32.98	■■■□□ 2.87
SQSTM1-215	ENST00000514093	A2ML1	A8K2U0	1454 aa		32.97	■■■□□ 2.87
SQSTM1-215	ENST00000514093	DNMT1	P26358	1616 aa	Known RBP	32.95	■■■□□ 2.87
SQSTM1-215	ENST00000514093	PIP4K2B	P78356	416 aa		32.95	■■■□□ 2.87
SQSTM1-215	ENST00000514093	FBXO31	Q5XUX0	539 aa	Predicted RBP	32.95	■■■□□ 2.87
SQSTM1-215	ENST00000514093	MBD5	Q9P267	1494 aa		32.93	■■■□□ 2.86
SQSTM1-215	ENST00000514093	HSPA1L	P34931	641 aa		32.93	■■■□□ 2.86
SQSTM1-215	ENST00000514093	TIAM1	Q13009	1591 aa		32.91	■■■□□ 2.86
SQSTM1-215	ENST00000514093	DHX29	Q7Z478	1369 aa	Known RBP	32.9	■■■□□ 2.86

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