RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 RTN4Q9NQC3 1192 aaKnown RBP10.47□□□□□ -0.73
NUP54-212ENST00000513248 AMER1Q5JTC6 1135 aaPredicted RBP10.46□□□□□ -0.73
NUP54-212ENST00000513248 NLRP6P59044 892 aa10.45□□□□□ -0.74
NUP54-212ENST00000513248 ERBB3P21860 1342 aa10.43□□□□□ -0.74
NUP54-212ENST00000513248 FBXO22Q8NEZ5 403 aa10.43□□□□□ -0.74
NUP54-212ENST00000513248 BCL11BQ9C0K0 894 aaPredicted RBP10.43□□□□□ -0.74
NUP54-212ENST00000513248 GPR153Q6NV75 609 aa10.39□□□□□ -0.75
NUP54-212ENST00000513248 STK24Q9Y6E0 443 aa10.38□□□□□ -0.75
NUP54-212ENST00000513248 VARS2Q5ST30 1063 aaKnown RBP10.36□□□□□ -0.75
NUP54-212ENST00000513248 MFRPQ9BY79 579 aa10.36□□□□□ -0.75
NUP54-212ENST00000513248 STK25O00506 426 aa10.35□□□□□ -0.75
NUP54-212ENST00000513248 ECM2O94769 699 aaPredicted RBP10.35□□□□□ -0.75
NUP54-212ENST00000513248 ZNF687Q8N1G0 1237 aa10.34□□□□□ -0.75
NUP54-212ENST00000513248 PKD2Q13563 968 aa10.32□□□□□ -0.76
NUP54-212ENST00000513248 KIF3CO14782 793 aa10.31□□□□□ -0.76
NUP54-212ENST00000513248 ARSIQ5FYB1 569 aa10.28□□□□□ -0.76
NUP54-212ENST00000513248 RGL2O15211 777 aa10.26□□□□□ -0.77
NUP54-212ENST00000513248 ZNF316A6NFI3 1004 aaPredicted RBP10.25□□□□□ -0.77
NUP54-212ENST00000513248 PTGER2P43116 358 aa10.25□□□□□ -0.77
NUP54-212ENST00000513248 C2orf72A6NCS6 295 aa10.24□□□□□ -0.77
NUP54-212ENST00000513248 SLC34A2O95436 690 aa10.24□□□□□ -0.77
NUP54-212ENST00000513248 RNF166Q96A37 237 aaPredicted RBP10.23□□□□□ -0.77
NUP54-212ENST00000513248 MYT1LQ9UL68 1186 aa10.22□□□□□ -0.77
NUP54-212ENST00000513248 TMC2Q8TDI7 906 aa10.2□□□□□ -0.78
NUP54-212ENST00000513248 KHSRPQ92945 711 aaKnown RBP eCLIP10.2□□□□□ -0.782e-6■■■□□ 15.9
NUP54-212ENST00000513248 PBX2P40425 430 aa10.17□□□□□ -0.78
NUP54-212ENST00000513248 PCDHGA4Q9Y5G9 962 aa10.16□□□□□ -0.78
NUP54-212ENST00000513248 NUDT7P0C024 238 aa10.15□□□□□ -0.78
NUP54-212ENST00000513248 LSM11P83369 360 aaKnown RBP eCLIP10.15□□□□□ -0.78
NUP54-212ENST00000513248 PPP1R37O75864 691 aa10.12□□□□□ -0.79
NUP54-212ENST00000513248 ANKRD13DQ6ZTN6 518 aa10.12□□□□□ -0.79
NUP54-212ENST00000513248 HS6ST3Q8IZP7 471 aa10.12□□□□□ -0.79
NUP54-212ENST00000513248 PSDA5PKW4 1024 aaPredicted RBP10.11□□□□□ -0.79
NUP54-212ENST00000513248 LHX6Q9UPM6 363 aa10.11□□□□□ -0.79
NUP54-212ENST00000513248 PTCD2Q8WV60 388 aaKnown RBP10.08□□□□□ -0.8
NUP54-212ENST00000513248 KDM4FA0A1W2PPD8 638 aa10.07□□□□□ -0.8
NUP54-212ENST00000513248 FOXK1P85037 733 aa10.07□□□□□ -0.8
NUP54-212ENST00000513248 POTEEQ6S8J3 1075 aa10.06□□□□□ -0.8
NUP54-212ENST00000513248 GPHNQ9NQX3 736 aaPredicted RBP10.06□□□□□ -0.8
NUP54-212ENST00000513248 DNAJC5Q9H3Z4 198 aa10.05□□□□□ -0.8
NUP54-212ENST00000513248 ARHGAP33O14559 1287 aa10.02□□□□□ -0.81
NUP54-212ENST00000513248 DCAF8L2P0C7V8 631 aa10.02□□□□□ -0.81
NUP54-212ENST00000513248 PLPP6Q8IY26 295 aa10.02□□□□□ -0.81
NUP54-212ENST00000513248 RYDENQ9NUL5 291 aaKnown RBP10.01□□□□□ -0.81
NUP54-212ENST00000513248 AXIN2Q9Y2T1 843 aa10.01□□□□□ -0.81
NUP54-212ENST00000513248 TBC1D12O60347 775 aa9.99□□□□□ -0.81
NUP54-212ENST00000513248 TK2O00142 265 aa9.98□□□□□ -0.81
NUP54-212ENST00000513248 CHGAP10645 457 aaKnown RBP9.98□□□□□ -0.81
NUP54-212ENST00000513248 DSG2Q14126 1118 aa9.98□□□□□ -0.81
NUP54-212ENST00000513248 ADGRD1Q6QNK2 874 aa9.98□□□□□ -0.81
NUP54-212ENST00000513248 PPP4R3BQ5MIZ7 849 aa9.95□□□□□ -0.82
NUP54-212ENST00000513248 NKX1-1Q15270 411 aaPredicted RBP9.94□□□□□ -0.82
NUP54-212ENST00000513248 HCSTQ9UBK5 93 aa9.94□□□□□ -0.82
NUP54-212ENST00000513248 HRO43593 1189 aa9.92□□□□□ -0.82
NUP54-212ENST00000513248 OXER1Q8TDS5 423 aa9.92□□□□□ -0.82
NUP54-212ENST00000513248 CRISPLD2Q9H0B8 497 aa9.91□□□□□ -0.82
NUP54-212ENST00000513248 PSEN2P49810 448 aa9.89□□□□□ -0.83
NUP54-212ENST00000513248 DMRTA1Q5VZB9 504 aa9.89□□□□□ -0.83
NUP54-212ENST00000513248 KCNH8Q96L42 1107 aa9.89□□□□□ -0.83
NUP54-212ENST00000513248 PPP1R15BQ5SWA1 713 aa9.86□□□□□ -0.83
NUP54-212ENST00000513248 PDE4AP27815 886 aa9.84□□□□□ -0.83
NUP54-212ENST00000513248 KCNK17Q96T54 332 aa9.84□□□□□ -0.83
NUP54-212ENST00000513248 PLA2G2EQ9NZK7 142 aa9.84□□□□□ -0.83
NUP54-212ENST00000513248 SLC4A5Q9BY07 1137 aa9.83□□□□□ -0.84
NUP54-212ENST00000513248 BCL2L12Q9HB09 334 aa9.83□□□□□ -0.84
NUP54-212ENST00000513248 NCKAP5LQ9HCH0 1330 aa9.82□□□□□ -0.84
NUP54-212ENST00000513248 BBXQ8WY36 941 aaPredicted RBP9.81□□□□□ -0.84
NUP54-212ENST00000513248 UPF1Q92900 1129 aaKnown RBP eCLIP9.81□□□□□ -0.84
NUP54-212ENST00000513248 VPS9D1Q9Y2B5 631 aa9.81□□□□□ -0.84
NUP54-212ENST00000513248 FOSBP53539 338 aa9.8□□□□□ -0.84
NUP54-212ENST00000513248 ZNF454Q8N9F8 522 aa9.8□□□□□ -0.84
NUP54-212ENST00000513248 STAC3Q96MF2 364 aa9.8□□□□□ -0.84
NUP54-212ENST00000513248 ANO8Q9HCE9 1232 aaPredicted RBP9.8□□□□□ -0.84
NUP54-212ENST00000513248 GTPBP6O43824 516 aaPredicted RBP9.79□□□□□ -0.84
NUP54-212ENST00000513248 JPH4Q96JJ6 628 aa9.78□□□□□ -0.84
NUP54-212ENST00000513248 KCTD12Q96CX2 325 aaKnown RBP9.77□□□□□ -0.85
NUP54-212ENST00000513248 PTPREP23469 700 aa9.76□□□□□ -0.85
NUP54-212ENST00000513248 MFSD10Q14728 455 aa9.75□□□□□ -0.85
NUP54-212ENST00000513248 DDX27Q96GQ7 796 aaKnown RBP9.75□□□□□ -0.85
NUP54-212ENST00000513248 BHMG1C9JSJ3 638 aaPredicted RBP9.74□□□□□ -0.85
NUP54-212ENST00000513248 EVI5O60447 810 aa9.74□□□□□ -0.85
NUP54-212ENST00000513248 PLCB2Q00722 1185 aa9.73□□□□□ -0.85
NUP54-212ENST00000513248 LARP6Q9BRS8 491 aaKnown RBP9.73□□□□□ -0.85
NUP54-212ENST00000513248 ZDHHC16Q969W1 377 aa9.72□□□□□ -0.85
NUP54-212ENST00000513248 ZBED2Q9BTP6 218 aa9.72□□□□□ -0.85
NUP54-212ENST00000513248 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.71□□□□□ -0.86
NUP54-212ENST00000513248 IFFO2Q5TF58 517 aa9.69□□□□□ -0.86
NUP54-212ENST00000513248 MAP3K9P80192 1104 aa9.68□□□□□ -0.86
NUP54-212ENST00000513248 ADAM33Q9BZ11 813 aa9.68□□□□□ -0.86
NUP54-212ENST00000513248 NBPF3Q9H094 633 aa9.68□□□□□ -0.86
NUP54-212ENST00000513248 THSD4Q6ZMP0 1018 aa9.67□□□□□ -0.86
NUP54-212ENST00000513248 MRPL50Q8N5N7 158 aaKnown RBP9.67□□□□□ -0.86
NUP54-212ENST00000513248 PPP1R3GB7ZBB8 358 aa9.65□□□□□ -0.86
NUP54-212ENST00000513248 PTPN5P54829 565 aa9.65□□□□□ -0.86
NUP54-212ENST00000513248 EMILIN3Q9NT22 766 aa9.65□□□□□ -0.86
NUP54-212ENST00000513248 GOLGA8CPA6NN73 597 aa9.64□□□□□ -0.87
NUP54-212ENST00000513248 SPRYD3Q8NCJ5 442 aa9.64□□□□□ -0.87
NUP54-212ENST00000513248 FBXW7Q969H0 707 aa9.64□□□□□ -0.87
NUP54-212ENST00000513248 RGS20O76081 388 aa9.63□□□□□ -0.87
NUP54-212ENST00000513248 PAXIP1Q6ZW49 1069 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms