RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 SCAPERQ9BY12 1400 aa32.21■■■□□ 2.75
HMGCS1-206ENST00000511774 ARHGEF12Q9NZN5 1544 aa32.21■■■□□ 2.75
HMGCS1-206ENST00000511774 PLCH2O75038 1416 aa32.18■■■□□ 2.74
HMGCS1-206ENST00000511774 ATP10AO60312 1499 aa32.14■■■□□ 2.74
HMGCS1-206ENST00000511774 PREX1Q8TCU6 1659 aa32.14■■■□□ 2.74
HMGCS1-206ENST00000511774 EEA1Q15075 1411 aa32.12■■■□□ 2.73
HMGCS1-206ENST00000511774 CEBPAP49715 358 aaPredicted RBP32.12■■■□□ 2.73
HMGCS1-206ENST00000511774 STRCQ7RTU9 1775 aa32.12■■■□□ 2.73
HMGCS1-206ENST00000511774 C9orf84Q5VXU9 1444 aa32.1■■■□□ 2.73
HMGCS1-206ENST00000511774 MYO5CQ9NQX4 1742 aa32.07■■■□□ 2.72
HMGCS1-206ENST00000511774 KIF14Q15058 1648 aa32.05■■■□□ 2.72
HMGCS1-206ENST00000511774 ILDR2Q71H61 639 aa32.03■■■□□ 2.72
HMGCS1-206ENST00000511774 EFCAB2Q5VUJ9 269 aa31.99■■■□□ 2.71
HMGCS1-206ENST00000511774 KDM5CP41229 1560 aa31.98■■■□□ 2.71
HMGCS1-206ENST00000511774 AFAP1Q8N556 730 aa31.96■■■□□ 2.71
HMGCS1-206ENST00000511774 DIP2CQ9Y2E4 1556 aa31.95■■■□□ 2.71
HMGCS1-206ENST00000511774 SETD1BQ9UPS6 1966 aaKnown RBP31.94■■■□□ 2.7
HMGCS1-206ENST00000511774 ZNF518AQ6AHZ1 1483 aa31.94■■■□□ 2.7
HMGCS1-206ENST00000511774 DISP3Q9P2K9 1392 aa31.93■■■□□ 2.7
HMGCS1-206ENST00000511774 ATP1B4Q9UN42 357 aaPredicted RBP31.92■■■□□ 2.7
HMGCS1-206ENST00000511774 LRRIQ1Q96JM4 1722 aa31.92■■■□□ 2.7
HMGCS1-206ENST00000511774 UHRF1BP1Q6BDS2 1440 aa31.92■■■□□ 2.7
HMGCS1-206ENST00000511774 ARHGAP35Q9NRY4 1499 aa31.9■■■□□ 2.7
HMGCS1-206ENST00000511774 ARHGAP5Q13017 1502 aa31.9■■■□□ 2.7
HMGCS1-206ENST00000511774 ABCA6Q8N139 1617 aa31.89■■■□□ 2.7
HMGCS1-206ENST00000511774 C3P01024 1663 aa31.89■■■□□ 2.7
HMGCS1-206ENST00000511774 EHMT2Q96KQ7 1210 aa31.88■■■□□ 2.69
HMGCS1-206ENST00000511774 TROQ12816 1431 aaPredicted RBP31.87■■■□□ 2.69
HMGCS1-206ENST00000511774 CDC42BPBQ9Y5S2 1711 aa31.86■■■□□ 2.69
HMGCS1-206ENST00000511774 REREQ9P2R6 1566 aa31.86■■■□□ 2.69
HMGCS1-206ENST00000511774 FMN1Q68DA7 1419 aa31.86■■■□□ 2.69
HMGCS1-206ENST00000511774 DMRT2Q9Y5R5 561 aa31.85■■■□□ 2.69
HMGCS1-206ENST00000511774 PTPRTO14522 1441 aa31.81■■■□□ 2.68
HMGCS1-206ENST00000511774 LTBP4Q8N2S1 1624 aa31.8■■■□□ 2.68
HMGCS1-206ENST00000511774 SOCS7O14512 581 aa31.8■■■□□ 2.68
HMGCS1-206ENST00000511774 MLH3Q9UHC1 1453 aa31.79■■■□□ 2.68
HMGCS1-206ENST00000511774 CDK11AQ9UQ88 783 aaPredicted RBP31.79■■■□□ 2.68
HMGCS1-206ENST00000511774 TRAPPC8Q9Y2L5 1435 aa31.78■■■□□ 2.68
HMGCS1-206ENST00000511774 MYT1LQ9UL68 1186 aa31.77■■■□□ 2.68
HMGCS1-206ENST00000511774 AGLP35573 1532 aa31.75■■■□□ 2.67
HMGCS1-206ENST00000511774 UBTFP17480 764 aaKnown RBP31.75■■■□□ 2.67
HMGCS1-206ENST00000511774 SPATA31D1Q6ZQQ2 1576 aa31.75■■■□□ 2.67
HMGCS1-206ENST00000511774 ABCC1P33527 1531 aa31.75■■■□□ 2.67
HMGCS1-206ENST00000511774 PREX2Q70Z35 1606 aa31.74■■■□□ 2.67
HMGCS1-206ENST00000511774 ITSN2Q9NZM3 1697 aa31.73■■■□□ 2.67
HMGCS1-206ENST00000511774 KIDINS220Q9ULH0 1771 aa31.72■■■□□ 2.67
HMGCS1-206ENST00000511774 CLIP1P30622 1438 aa31.72■■■□□ 2.67
HMGCS1-206ENST00000511774 NCOA1Q15788 1441 aa31.69■■■□□ 2.66
HMGCS1-206ENST00000511774 CDC42BPAQ5VT25 1732 aa31.63■■■□□ 2.65
HMGCS1-206ENST00000511774 CAMSAP1Q5T5Y3 1602 aa31.6■■■□□ 2.65
HMGCS1-206ENST00000511774 IQSEC2Q5JU85 1478 aa31.59■■■□□ 2.65
HMGCS1-206ENST00000511774 ESF1Q9H501 851 aaKnown RBP31.59■■■□□ 2.65
HMGCS1-206ENST00000511774 CNTLNQ9NXG0 1405 aa31.58■■■□□ 2.65
HMGCS1-206ENST00000511774 SAMD9LQ8IVG5 1584 aa31.57■■■□□ 2.64
HMGCS1-206ENST00000511774 MROH2AA6NES4 1674 aa31.56■■■□□ 2.64
HMGCS1-206ENST00000511774 NPATQ14207 1427 aa31.52■■■□□ 2.64
HMGCS1-206ENST00000511774 CASKIN1Q8WXD9 1431 aa31.52■■■□□ 2.64
HMGCS1-206ENST00000511774 SUPT6HQ7KZ85 1726 aaKnown RBP31.51■■■□□ 2.63
HMGCS1-206ENST00000511774 NCKAP5LQ9HCH0 1330 aa31.5■■■□□ 2.63
HMGCS1-206ENST00000511774 ZMYM3Q14202 1370 aa31.5■■■□□ 2.63
HMGCS1-206ENST00000511774 CCDC18Q5T9S5 1454 aa31.5■■■□□ 2.63
HMGCS1-206ENST00000511774 ZNF335Q9H4Z2 1342 aaPredicted RBP31.49■■■□□ 2.63
HMGCS1-206ENST00000511774 SYCP2Q9BX26 1530 aa31.49■■■□□ 2.63
HMGCS1-206ENST00000511774 CLTCQ00610 1675 aaKnown RBP31.47■■■□□ 2.63
HMGCS1-206ENST00000511774 ZNF142P52746 1687 aaPredicted RBP31.44■■■□□ 2.62
HMGCS1-206ENST00000511774 ZNF777Q9ULD5 760 aaPredicted RBP31.44■■■□□ 2.62
HMGCS1-206ENST00000511774 MYO3AQ8NEV4 1616 aa31.44■■■□□ 2.62
HMGCS1-206ENST00000511774 PLXNC1O60486 1568 aa31.42■■■□□ 2.62
HMGCS1-206ENST00000511774 GPATCH8Q9UKJ3 1502 aaKnown RBP31.41■■■□□ 2.62
HMGCS1-206ENST00000511774 HNRNPMP52272 730 aaKnown RBP eCLIP31.41■■■□□ 2.626e-8■■■■■ 30.3
HMGCS1-206ENST00000511774 SPAG9O60271 1321 aaKnown RBP31.4■■■□□ 2.62
HMGCS1-206ENST00000511774 ATP7AQ04656 1500 aa31.39■■■□□ 2.62
HMGCS1-206ENST00000511774 INO80Q9ULG1 1556 aaPredicted RBP31.39■■■□□ 2.62
HMGCS1-206ENST00000511774 PTPRKQ15262 1439 aa31.39■■■□□ 2.62
HMGCS1-206ENST00000511774 TCOF1Q13428 1488 aaKnown RBP31.38■■■□□ 2.61
HMGCS1-206ENST00000511774 CEP170BQ9Y4F5 1589 aaPredicted RBP31.38■■■□□ 2.61
HMGCS1-206ENST00000511774 UBAP1LF5GYI3 381 aa31.37■■■□□ 2.61
HMGCS1-206ENST00000511774 PLA2R1Q13018 1463 aa31.36■■■□□ 2.61
HMGCS1-206ENST00000511774 FYCO1Q9BQS8 1478 aa31.34■■■□□ 2.61
HMGCS1-206ENST00000511774 A2MP01023 1474 aa31.33■■■□□ 2.61
HMGCS1-206ENST00000511774 CHIC1Q5VXU3 224 aa31.32■■■□□ 2.6
HMGCS1-206ENST00000511774 PKD2Q13563 968 aa31.3■■■□□ 2.6
HMGCS1-206ENST00000511774 KIAA1107Q9UPP5 1409 aa31.29■■■□□ 2.6
HMGCS1-206ENST00000511774 GGT6Q6P531 493 aa31.27■■■□□ 2.6
HMGCS1-206ENST00000511774 DNMT1P26358 1616 aaKnown RBP31.23■■■□□ 2.59
HMGCS1-206ENST00000511774 CFDP1Q9UEE9 299 aaPredicted RBP31.22■■■□□ 2.59
HMGCS1-206ENST00000511774 PLEKHH2Q8IVE3 1493 aa31.21■■■□□ 2.59
HMGCS1-206ENST00000511774 PPP6R1Q9UPN7 881 aa31.21■■■□□ 2.59
HMGCS1-206ENST00000511774 ADGBQ8N7X0 1667 aa31.21■■■□□ 2.59
HMGCS1-206ENST00000511774 A2ML1A8K2U0 1454 aa31.2■■■□□ 2.58
HMGCS1-206ENST00000511774 ZNF644Q9H582 1327 aaPredicted RBP31.18■■■□□ 2.58
HMGCS1-206ENST00000511774 NEURL4Q96JN8 1562 aa31.17■■■□□ 2.58
HMGCS1-206ENST00000511774 CCNB3Q8WWL7 1395 aa31.17■■■□□ 2.58
HMGCS1-206ENST00000511774 MED1Q15648 1581 aaPredicted RBP31.14■■■□□ 2.58
HMGCS1-206ENST00000511774 HSPA1LP34931 641 aa31.14■■■□□ 2.58
HMGCS1-206ENST00000511774 POLR1AO95602 1720 aaPredicted RBP31.14■■■□□ 2.58
HMGCS1-206ENST00000511774 MBD5Q9P267 1494 aa31.14■■■□□ 2.57
HMGCS1-206ENST00000511774 TIAM1Q13009 1591 aa31.12■■■□□ 2.57
HMGCS1-206ENST00000511774 FBXO31Q5XUX0 539 aaPredicted RBP31.1■■■□□ 2.57
HMGCS1-206ENST00000511774 PIP4K2BP78356 416 aa31.08■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms