RNA–Protein interactions for RNA: ENST00000507001.1

SPCS3-202, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 478 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-202ENST00000507001 ZSWIM6Q9HCJ5 1215 aa13.08□□□□□ -0.32
SPCS3-202ENST00000507001 BCL11BQ9C0K0 894 aaPredicted RBP13.07□□□□□ -0.32
SPCS3-202ENST00000507001 FBXO22Q8NEZ5 403 aa13.06□□□□□ -0.32
SPCS3-202ENST00000507001 ECM2O94769 699 aaPredicted RBP13.01□□□□□ -0.33
SPCS3-202ENST00000507001 STK24Q9Y6E0 443 aa13.01□□□□□ -0.33
SPCS3-202ENST00000507001 ERBB3P21860 1342 aa13□□□□□ -0.33
SPCS3-202ENST00000507001 MFRPQ9BY79 579 aa12.99□□□□□ -0.33
SPCS3-202ENST00000507001 STK25O00506 426 aa12.98□□□□□ -0.33
SPCS3-202ENST00000507001 GPR153Q6NV75 609 aa12.97□□□□□ -0.33
SPCS3-202ENST00000507001 PKD2Q13563 968 aa12.96□□□□□ -0.33
SPCS3-202ENST00000507001 VARS2Q5ST30 1063 aaKnown RBP12.91□□□□□ -0.34
SPCS3-202ENST00000507001 KIF3CO14782 793 aa12.9□□□□□ -0.34
SPCS3-202ENST00000507001 RGL2O15211 777 aa12.9□□□□□ -0.34
SPCS3-202ENST00000507001 ZNF687Q8N1G0 1237 aa12.89□□□□□ -0.35
SPCS3-202ENST00000507001 ARSIQ5FYB1 569 aa12.83□□□□□ -0.36
SPCS3-202ENST00000507001 C2orf72A6NCS6 295 aa12.82□□□□□ -0.36
SPCS3-202ENST00000507001 RTN4Q9NQC3 1192 aaKnown RBP12.82□□□□□ -0.36
SPCS3-202ENST00000507001 ZNF316A6NFI3 1004 aaPredicted RBP12.79□□□□□ -0.36
SPCS3-202ENST00000507001 SLC34A2O95436 690 aa12.79□□□□□ -0.36
SPCS3-202ENST00000507001 PTGER2P43116 358 aa12.76□□□□□ -0.37
SPCS3-202ENST00000507001 TMC2Q8TDI7 906 aa12.75□□□□□ -0.37
SPCS3-202ENST00000507001 KHSRPQ92945 711 aaKnown RBP eCLIP12.74□□□□□ -0.37
SPCS3-202ENST00000507001 AMER1Q5JTC6 1135 aaPredicted RBP12.73□□□□□ -0.37
SPCS3-202ENST00000507001 RNF166Q96A37 237 aaPredicted RBP12.73□□□□□ -0.37
SPCS3-202ENST00000507001 HS6ST3Q8IZP7 471 aa12.72□□□□□ -0.37
SPCS3-202ENST00000507001 PPP1R37O75864 691 aa12.7□□□□□ -0.38
SPCS3-202ENST00000507001 MYT1LQ9UL68 1186 aa12.7□□□□□ -0.38
SPCS3-202ENST00000507001 PCDHGA4Q9Y5G9 962 aa12.69□□□□□ -0.38
SPCS3-202ENST00000507001 NUDT7P0C024 238 aa12.68□□□□□ -0.38
SPCS3-202ENST00000507001 PBX2P40425 430 aa12.68□□□□□ -0.38
SPCS3-202ENST00000507001 LSM11P83369 360 aaKnown RBP eCLIP12.65□□□□□ -0.38
SPCS3-202ENST00000507001 DNAJC5Q9H3Z4 198 aa12.64□□□□□ -0.39
SPCS3-202ENST00000507001 LHX6Q9UPM6 363 aa12.63□□□□□ -0.39
SPCS3-202ENST00000507001 FOXK1P85037 733 aa12.62□□□□□ -0.39
SPCS3-202ENST00000507001 PSDA5PKW4 1024 aaPredicted RBP12.61□□□□□ -0.39
SPCS3-202ENST00000507001 PTCD2Q8WV60 388 aaKnown RBP12.61□□□□□ -0.39
SPCS3-202ENST00000507001 ANKRD13DQ6ZTN6 518 aa12.6□□□□□ -0.39
SPCS3-202ENST00000507001 KDM4FA0A1W2PPD8 638 aa12.59□□□□□ -0.39
SPCS3-202ENST00000507001 GPHNQ9NQX3 736 aaPredicted RBP12.59□□□□□ -0.39
SPCS3-202ENST00000507001 POTEEQ6S8J3 1075 aa12.57□□□□□ -0.4
SPCS3-202ENST00000507001 RYDENQ9NUL5 291 aaKnown RBP12.56□□□□□ -0.4
SPCS3-202ENST00000507001 CHGAP10645 457 aaKnown RBP12.54□□□□□ -0.4
SPCS3-202ENST00000507001 PLPP6Q8IY26 295 aa12.54□□□□□ -0.4
SPCS3-202ENST00000507001 ARHGAP33O14559 1287 aa12.5□□□□□ -0.41
SPCS3-202ENST00000507001 DSG2Q14126 1118 aa12.5□□□□□ -0.41
SPCS3-202ENST00000507001 NKX1-1Q15270 411 aaPredicted RBP12.49□□□□□ -0.41
SPCS3-202ENST00000507001 TBC1D12O60347 775 aa12.48□□□□□ -0.41
SPCS3-202ENST00000507001 AXIN2Q9Y2T1 843 aa12.48□□□□□ -0.41
SPCS3-202ENST00000507001 TK2O00142 265 aa12.45□□□□□ -0.42
SPCS3-202ENST00000507001 ADGRD1Q6QNK2 874 aa12.44□□□□□ -0.42
SPCS3-202ENST00000507001 CRISPLD2Q9H0B8 497 aa12.44□□□□□ -0.42
SPCS3-202ENST00000507001 PPP4R3BQ5MIZ7 849 aa12.43□□□□□ -0.42
SPCS3-202ENST00000507001 OXER1Q8TDS5 423 aa12.41□□□□□ -0.42
SPCS3-202ENST00000507001 HRO43593 1189 aa12.38□□□□□ -0.43
SPCS3-202ENST00000507001 SLC24A1O60721 1099 aa12.38□□□□□ -0.43
SPCS3-202ENST00000507001 PPP1R15BQ5SWA1 713 aa12.36□□□□□ -0.43
SPCS3-202ENST00000507001 HCSTQ9UBK5 93 aa12.36□□□□□ -0.43
SPCS3-202ENST00000507001 PSEN2P49810 448 aa12.35□□□□□ -0.43
SPCS3-202ENST00000507001 DMRTA1Q5VZB9 504 aa12.35□□□□□ -0.43
SPCS3-202ENST00000507001 PDE4AP27815 886 aa12.33□□□□□ -0.44
SPCS3-202ENST00000507001 KCNH8Q96L42 1107 aa12.33□□□□□ -0.44
SPCS3-202ENST00000507001 NCKAP5LQ9HCH0 1330 aa12.33□□□□□ -0.44
SPCS3-202ENST00000507001 GTPBP6O43824 516 aaPredicted RBP12.31□□□□□ -0.44
SPCS3-202ENST00000507001 UPF1Q92900 1129 aaKnown RBP eCLIP12.29□□□□□ -0.44
SPCS3-202ENST00000507001 BCL2L12Q9HB09 334 aa12.29□□□□□ -0.44
SPCS3-202ENST00000507001 KCNK17Q96T54 332 aa12.28□□□□□ -0.44
SPCS3-202ENST00000507001 SLC4A5Q9BY07 1137 aa12.27□□□□□ -0.45
SPCS3-202ENST00000507001 ANO8Q9HCE9 1232 aaPredicted RBP12.27□□□□□ -0.45
SPCS3-202ENST00000507001 ZNF454Q8N9F8 522 aa12.26□□□□□ -0.45
SPCS3-202ENST00000507001 FOSBP53539 338 aa12.25□□□□□ -0.45
SPCS3-202ENST00000507001 MFSD10Q14728 455 aa12.25□□□□□ -0.45
SPCS3-202ENST00000507001 VPS9D1Q9Y2B5 631 aa12.25□□□□□ -0.45
SPCS3-202ENST00000507001 PLA2G2EQ9NZK7 142 aa12.24□□□□□ -0.45
SPCS3-202ENST00000507001 DDX27Q96GQ7 796 aaKnown RBP12.23□□□□□ -0.45
SPCS3-202ENST00000507001 JPH4Q96JJ6 628 aa12.23□□□□□ -0.45
SPCS3-202ENST00000507001 STAC3Q96MF2 364 aa12.21□□□□□ -0.45
SPCS3-202ENST00000507001 EVI5O60447 810 aa12.2□□□□□ -0.46
SPCS3-202ENST00000507001 PTPREP23469 700 aa12.2□□□□□ -0.46
SPCS3-202ENST00000507001 LARP6Q9BRS8 491 aaKnown RBP12.2□□□□□ -0.46
SPCS3-202ENST00000507001 KCTD12Q96CX2 325 aaKnown RBP12.18□□□□□ -0.46
SPCS3-202ENST00000507001 BHMG1C9JSJ3 638 aaPredicted RBP12.16□□□□□ -0.46
SPCS3-202ENST00000507001 ZDHHC16Q969W1 377 aa12.16□□□□□ -0.46
SPCS3-202ENST00000507001 ZBED2Q9BTP6 218 aa12.15□□□□□ -0.46
SPCS3-202ENST00000507001 MAP3K9P80192 1104 aa12.13□□□□□ -0.47
SPCS3-202ENST00000507001 ADAM33Q9BZ11 813 aa12.12□□□□□ -0.47
SPCS3-202ENST00000507001 EMILIN3Q9NT22 766 aa12.11□□□□□ -0.47
SPCS3-202ENST00000507001 DCAF8L2P0C7V8 631 aa12.09□□□□□ -0.47
SPCS3-202ENST00000507001 PPP1R3GB7ZBB8 358 aa12.07□□□□□ -0.48
SPCS3-202ENST00000507001 IFFO2Q5TF58 517 aa12.07□□□□□ -0.48
SPCS3-202ENST00000507001 THSD4Q6ZMP0 1018 aa12.07□□□□□ -0.48
SPCS3-202ENST00000507001 NBPF3Q9H094 633 aa12.07□□□□□ -0.48
SPCS3-202ENST00000507001 CADPS2Q86UW7 1296 aa12.06□□□□□ -0.48
SPCS3-202ENST00000507001 MRPL50Q8N5N7 158 aaKnown RBP12.06□□□□□ -0.48
SPCS3-202ENST00000507001 FBXW7Q969H0 707 aa12.06□□□□□ -0.48
SPCS3-202ENST00000507001 PCDHGA10Q9Y5H3 936 aa12.06□□□□□ -0.48
SPCS3-202ENST00000507001 CAMK2BQ13554 666 aa12.05□□□□□ -0.48
SPCS3-202ENST00000507001 PHF14O94880 888 aa12.04□□□□□ -0.48
SPCS3-202ENST00000507001 GOLGA8CPA6NN73 597 aa12.02□□□□□ -0.49
SPCS3-202ENST00000507001 PTPN5P54829 565 aa12.02□□□□□ -0.49
SPCS3-202ENST00000507001 TYW1BQ6NUM6 668 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms