RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 ZMYM4Q5VZL5 1548 aa19.41■□□□□ 0.7
MED28-203ENST00000503945 MLECQ14165 292 aa19.4■□□□□ 0.7
MED28-203ENST00000503945 POGZQ7Z3K3 1410 aa19.4■□□□□ 0.7
MED28-203ENST00000503945 ARHGAP35Q9NRY4 1499 aa19.4■□□□□ 0.7
MED28-203ENST00000503945 ZFYVE16Q7Z3T8 1539 aa19.4■□□□□ 0.7
MED28-203ENST00000503945 HECW1Q76N89 1606 aa19.4■□□□□ 0.7
MED28-203ENST00000503945 HSPA2P54652 639 aa19.39■□□□□ 0.69
MED28-203ENST00000503945 MAGI2Q86UL8 1455 aa19.38■□□□□ 0.69
MED28-203ENST00000503945 EFCAB2Q5VUJ9 269 aa19.36■□□□□ 0.69
MED28-203ENST00000503945 MYO5CQ9NQX4 1742 aa19.33■□□□□ 0.68
MED28-203ENST00000503945 ATP10AO60312 1499 aa19.32■□□□□ 0.68
MED28-203ENST00000503945 FER1L4A9Z1Z3 1794 aa19.32■□□□□ 0.68
MED28-203ENST00000503945 KIF14Q15058 1648 aa19.3■□□□□ 0.68
MED28-203ENST00000503945 AFAP1Q8N556 730 aa19.29■□□□□ 0.68
MED28-203ENST00000503945 CEBPAP49715 358 aaPredicted RBP19.28■□□□□ 0.68
MED28-203ENST00000503945 LRRIQ1Q96JM4 1722 aa19.28■□□□□ 0.68
MED28-203ENST00000503945 TROQ12816 1431 aaPredicted RBP19.27■□□□□ 0.68
MED28-203ENST00000503945 C9orf84Q5VXU9 1444 aa19.26■□□□□ 0.67
MED28-203ENST00000503945 ARHGEF12Q9NZN5 1544 aa19.25■□□□□ 0.67
MED28-203ENST00000503945 MYT1LQ9UL68 1186 aa19.24■□□□□ 0.67
MED28-203ENST00000503945 ARHGAP5Q13017 1502 aa19.24■□□□□ 0.67
MED28-203ENST00000503945 CLIP1P30622 1438 aa19.24■□□□□ 0.67
MED28-203ENST00000503945 CASKIN1Q8WXD9 1431 aa19.23■□□□□ 0.67
MED28-203ENST00000503945 CDC42BPBQ9Y5S2 1711 aa19.22■□□□□ 0.67
MED28-203ENST00000503945 ZNF518AQ6AHZ1 1483 aa19.22■□□□□ 0.67
MED28-203ENST00000503945 CERKQ8TCT0 537 aa19.21■□□□□ 0.67
MED28-203ENST00000503945 KDM5CP41229 1560 aa19.19■□□□□ 0.66
MED28-203ENST00000503945 SETD1BQ9UPS6 1966 aaKnown RBP19.19■□□□□ 0.66
MED28-203ENST00000503945 PREX1Q8TCU6 1659 aa19.17■□□□□ 0.66
MED28-203ENST00000503945 DIP2CQ9Y2E4 1556 aa19.16■□□□□ 0.66
MED28-203ENST00000503945 TRAPPC8Q9Y2L5 1435 aa19.15■□□□□ 0.66
MED28-203ENST00000503945 CCDC18Q5T9S5 1454 aa19.15■□□□□ 0.66
MED28-203ENST00000503945 MLH3Q9UHC1 1453 aa19.14■□□□□ 0.65
MED28-203ENST00000503945 STRCQ7RTU9 1775 aa19.14■□□□□ 0.65
MED28-203ENST00000503945 PREX2Q70Z35 1606 aa19.12■□□□□ 0.65
MED28-203ENST00000503945 ABCA6Q8N139 1617 aa19.12■□□□□ 0.65
MED28-203ENST00000503945 REREQ9P2R6 1566 aa19.11■□□□□ 0.65
MED28-203ENST00000503945 ZNF777Q9ULD5 760 aaPredicted RBP19.11■□□□□ 0.65
MED28-203ENST00000503945 LOC105371045A0A1W2PR82 267 aa19.1■□□□□ 0.65
MED28-203ENST00000503945 DMRT2Q9Y5R5 561 aa19.1■□□□□ 0.65
MED28-203ENST00000503945 CDC42BPAQ5VT25 1732 aa19.1■□□□□ 0.65
MED28-203ENST00000503945 ITSN2Q9NZM3 1697 aa19.1■□□□□ 0.65
MED28-203ENST00000503945 ABCC1P33527 1531 aa19.1■□□□□ 0.65
MED28-203ENST00000503945 C3P01024 1663 aa19.09■□□□□ 0.65
MED28-203ENST00000503945 FYCO1Q9BQS8 1478 aa19.09■□□□□ 0.65
MED28-203ENST00000503945 UHRF1BP1Q6BDS2 1440 aa19.08■□□□□ 0.65
MED28-203ENST00000503945 ESF1Q9H501 851 aaKnown RBP19.08■□□□□ 0.64
MED28-203ENST00000503945 KIDINS220Q9ULH0 1771 aa19.08■□□□□ 0.64
MED28-203ENST00000503945 AGLP35573 1532 aa19.07■□□□□ 0.64
MED28-203ENST00000503945 CFDP1Q9UEE9 299 aaPredicted RBP19.06■□□□□ 0.64
MED28-203ENST00000503945 HNRNPMP52272 730 aaKnown RBP eCLIP19.04■□□□□ 0.64
MED28-203ENST00000503945 MTUS2Q5JR59 1369 aa19.03■□□□□ 0.64
MED28-203ENST00000503945 SAMD9LQ8IVG5 1584 aa19.02■□□□□ 0.63
MED28-203ENST00000503945 CEP162Q5TB80 1403 aa19.01■□□□□ 0.63
MED28-203ENST00000503945 GPATCH8Q9UKJ3 1502 aaKnown RBP19.01■□□□□ 0.63
MED28-203ENST00000503945 CCNB3Q8WWL7 1395 aa19■□□□□ 0.63
MED28-203ENST00000503945 SPAG9O60271 1321 aaKnown RBP19■□□□□ 0.63
MED28-203ENST00000503945 PTPRTO14522 1441 aa18.99■□□□□ 0.63
MED28-203ENST00000503945 CNTLNQ9NXG0 1405 aa18.98■□□□□ 0.63
MED28-203ENST00000503945 SUPT6HQ7KZ85 1726 aaKnown RBP18.97■□□□□ 0.63
MED28-203ENST00000503945 SYCP2Q9BX26 1530 aa18.97■□□□□ 0.63
MED28-203ENST00000503945 ZMYM3Q14202 1370 aa18.96■□□□□ 0.63
MED28-203ENST00000503945 KIAA1107Q9UPP5 1409 aa18.92■□□□□ 0.62
MED28-203ENST00000503945 MROH2AA6NES4 1674 aa18.92■□□□□ 0.62
MED28-203ENST00000503945 NCOA1Q15788 1441 aa18.91■□□□□ 0.62
MED28-203ENST00000503945 ATP7AQ04656 1500 aa18.91■□□□□ 0.62
MED28-203ENST00000503945 LTBP4Q8N2S1 1624 aa18.9■□□□□ 0.62
MED28-203ENST00000503945 CLTCQ00610 1675 aaKnown RBP18.9■□□□□ 0.62
MED28-203ENST00000503945 GGT6Q6P531 493 aa18.9■□□□□ 0.62
MED28-203ENST00000503945 NCKAP5LQ9HCH0 1330 aa18.9■□□□□ 0.62
MED28-203ENST00000503945 NPATQ14207 1427 aa18.9■□□□□ 0.62
MED28-203ENST00000503945 PLEKHH2Q8IVE3 1493 aa18.9■□□□□ 0.62
MED28-203ENST00000503945 CAMSAP1Q5T5Y3 1602 aa18.89■□□□□ 0.62
MED28-203ENST00000503945 ZNF644Q9H582 1327 aaPredicted RBP18.89■□□□□ 0.61
MED28-203ENST00000503945 A2MP01023 1474 aa18.89■□□□□ 0.61
MED28-203ENST00000503945 INO80Q9ULG1 1556 aaPredicted RBP18.88■□□□□ 0.61
MED28-203ENST00000503945 RSPH4AQ5TD94 716 aa18.87■□□□□ 0.61
MED28-203ENST00000503945 PLXNC1O60486 1568 aa18.86■□□□□ 0.61
MED28-203ENST00000503945 DISP3Q9P2K9 1392 aa18.86■□□□□ 0.61
MED28-203ENST00000503945 ILDR2Q71H61 639 aa18.85■□□□□ 0.61
MED28-203ENST00000503945 PTPRKQ15262 1439 aa18.84■□□□□ 0.61
MED28-203ENST00000503945 APLP2Q06481 763 aa18.84■□□□□ 0.61
MED28-203ENST00000503945 PPP6R1Q9UPN7 881 aa18.83■□□□□ 0.6
MED28-203ENST00000503945 MBD5Q9P267 1494 aa18.82■□□□□ 0.6
MED28-203ENST00000503945 ADGBQ8N7X0 1667 aa18.82■□□□□ 0.6
MED28-203ENST00000503945 TIAM1Q13009 1591 aa18.81■□□□□ 0.6
MED28-203ENST00000503945 VPS8Q8N3P4 1428 aa18.81■□□□□ 0.6
MED28-203ENST00000503945 ZNF335Q9H4Z2 1342 aaPredicted RBP18.8■□□□□ 0.6
MED28-203ENST00000503945 IQSEC2Q5JU85 1478 aa18.8■□□□□ 0.6
MED28-203ENST00000503945 TSPY4P0CV99 314 aa18.8■□□□□ 0.6
MED28-203ENST00000503945 TSPY10P0CW01 314 aa18.8■□□□□ 0.6
MED28-203ENST00000503945 PKD2Q13563 968 aa18.8■□□□□ 0.6
MED28-203ENST00000503945 EHBP1L1Q8N3D4 1523 aa18.79■□□□□ 0.6
MED28-203ENST00000503945 MYO3AQ8NEV4 1616 aa18.79■□□□□ 0.6
MED28-203ENST00000503945 KANK4Q5T7N3 995 aaPredicted RBP18.78■□□□□ 0.6
MED28-203ENST00000503945 ZNF142P52746 1687 aaPredicted RBP18.78■□□□□ 0.6
MED28-203ENST00000503945 DHX29Q7Z478 1369 aaKnown RBP18.78■□□□□ 0.6
MED28-203ENST00000503945 RTEL1-TNFRSF6BF6WH68 1400 aa18.77■□□□□ 0.6
MED28-203ENST00000503945 NCOA2Q15596 1464 aa18.77■□□□□ 0.59
MED28-203ENST00000503945 CEP170BQ9Y4F5 1589 aaPredicted RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms