RNA–Protein interactions for RNA: ENST00000497993.5

TMEM39A-212, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 590 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-212ENST00000497993 TIMELESSQ9UNS1 1208 aa10.62□□□□□ -0.71
TMEM39A-212ENST00000497993 CUX2O14529 1486 aa10.61□□□□□ -0.71
TMEM39A-212ENST00000497993 KIF21AQ7Z4S6 1674 aa10.61□□□□□ -0.71
TMEM39A-212ENST00000497993 NLRP6P59044 892 aa10.6□□□□□ -0.71
TMEM39A-212ENST00000497993 SPRYD3Q8NCJ5 442 aa10.6□□□□□ -0.71
TMEM39A-212ENST00000497993 NESP48681 1621 aa10.59□□□□□ -0.71
TMEM39A-212ENST00000497993 PELP1Q8IZL8 1130 aaKnown RBP10.59□□□□□ -0.71
TMEM39A-212ENST00000497993 SLC39A7Q92504 469 aa10.59□□□□□ -0.71
TMEM39A-212ENST00000497993 TULP1O00294 542 aaPredicted RBP10.58□□□□□ -0.72
TMEM39A-212ENST00000497993 MFRPQ9BY79 579 aa10.58□□□□□ -0.72
TMEM39A-212ENST00000497993 GTPBP6O43824 516 aaPredicted RBP10.57□□□□□ -0.72
TMEM39A-212ENST00000497993 C7P10643 843 aa10.57□□□□□ -0.72
TMEM39A-212ENST00000497993 ILDR1Q86SU0 546 aaPredicted RBP10.57□□□□□ -0.72
TMEM39A-212ENST00000497993 PAXIP1Q6ZW49 1069 aaPredicted RBP10.56□□□□□ -0.72
TMEM39A-212ENST00000497993 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.56□□□□□ -0.722e-6■■□□□ 11.9
TMEM39A-212ENST00000497993 PHF8Q9UPP1 1060 aa10.56□□□□□ -0.72
TMEM39A-212ENST00000497993 KDM2AQ9Y2K7 1162 aa10.56□□□□□ -0.72
TMEM39A-212ENST00000497993 CADPSQ9ULU8 1353 aa10.55□□□□□ -0.72
TMEM39A-212ENST00000497993 FBXO22Q8NEZ5 403 aa10.55□□□□□ -0.72
TMEM39A-212ENST00000497993 CFTRP13569 1480 aa10.55□□□□□ -0.72
TMEM39A-212ENST00000497993 IRX5P78411 483 aaPredicted RBP10.54□□□□□ -0.72
TMEM39A-212ENST00000497993 CFAP44Q96MT7 982 aa10.54□□□□□ -0.72
TMEM39A-212ENST00000497993 OCEL1Q9H607 264 aa10.54□□□□□ -0.72
TMEM39A-212ENST00000497993 ERCC6Q03468 1493 aa10.53□□□□□ -0.72
TMEM39A-212ENST00000497993 PDS5BQ9NTI5 1447 aa10.52□□□□□ -0.73
TMEM39A-212ENST00000497993 SEC24BO95487 1268 aa10.51□□□□□ -0.73
TMEM39A-212ENST00000497993 PLCG2P16885 1265 aa10.51□□□□□ -0.73
TMEM39A-212ENST00000497993 METRNQ9UJH8 293 aa10.51□□□□□ -0.73
TMEM39A-212ENST00000497993 WDR62O43379 1518 aa10.5□□□□□ -0.73
TMEM39A-212ENST00000497993 GTF3C3Q9Y5Q9 886 aa10.5□□□□□ -0.73
TMEM39A-212ENST00000497993 MS4A4AQ96JQ5 239 aa10.49□□□□□ -0.73
TMEM39A-212ENST00000497993 PDCD7Q8N8D1 485 aaKnown RBP10.48□□□□□ -0.73
TMEM39A-212ENST00000497993 MRC2Q9UBG0 1479 aa10.46□□□□□ -0.74
TMEM39A-212ENST00000497993 CCDC88BA6NC98 1476 aa10.45□□□□□ -0.74
TMEM39A-212ENST00000497993 COLQQ9Y215 455 aaPredicted RBP10.45□□□□□ -0.74
TMEM39A-212ENST00000497993 CEP164Q9UPV0 1460 aa10.44□□□□□ -0.74
TMEM39A-212ENST00000497993 POTEFA5A3E0 1075 aa10.44□□□□□ -0.74
TMEM39A-212ENST00000497993 HOMEZQ8IX15 550 aa10.44□□□□□ -0.74
TMEM39A-212ENST00000497993 FANCD2Q9BXW9 1451 aa10.43□□□□□ -0.74
TMEM39A-212ENST00000497993 L3MBTL3Q96JM7 780 aaPredicted RBP10.43□□□□□ -0.74
TMEM39A-212ENST00000497993 PPP1R37O75864 691 aa10.42□□□□□ -0.74
TMEM39A-212ENST00000497993 DPY19L2Q6NUT2 758 aa10.41□□□□□ -0.74
TMEM39A-212ENST00000497993 G3V3G9 751 aa10.38□□□□□ -0.75
TMEM39A-212ENST00000497993 NBR1Q14596 966 aa10.38□□□□□ -0.75
TMEM39A-212ENST00000497993 BOLA1Q9Y3E2 137 aa10.38□□□□□ -0.75
TMEM39A-212ENST00000497993 TMEM121BQ9BXQ6 578 aaPredicted RBP10.37□□□□□ -0.75
TMEM39A-212ENST00000497993 URB2Q14146 1524 aaKnown RBP10.36□□□□□ -0.75
TMEM39A-212ENST00000497993 MICALL2Q8IY33 904 aa10.35□□□□□ -0.75
TMEM39A-212ENST00000497993 TSHZ2Q9NRE2 1034 aa10.34□□□□□ -0.75
TMEM39A-212ENST00000497993 ABCC8Q09428 1581 aa10.33□□□□□ -0.76
TMEM39A-212ENST00000497993 DNMBPQ6XZF7 1577 aa10.33□□□□□ -0.76
TMEM39A-212ENST00000497993 TOPBP1Q92547 1522 aa10.29□□□□□ -0.76
TMEM39A-212ENST00000497993 WDR97A6NE52 1622 aa10.29□□□□□ -0.76
TMEM39A-212ENST00000497993 POTEB2H3BUK9 544 aa10.28□□□□□ -0.76
TMEM39A-212ENST00000497993 MAMSTRQ6ZN01 415 aa10.28□□□□□ -0.76
TMEM39A-212ENST00000497993 TMEM132AQ24JP5 1023 aa10.27□□□□□ -0.77
TMEM39A-212ENST00000497993 C3orf67Q6ZVT6 689 aa10.27□□□□□ -0.77
TMEM39A-212ENST00000497993 TARBP1Q13395 1621 aaKnown RBP10.26□□□□□ -0.77
TMEM39A-212ENST00000497993 CADPS2Q86UW7 1296 aa10.26□□□□□ -0.77
TMEM39A-212ENST00000497993 PDE4AP27815 886 aa10.25□□□□□ -0.77
TMEM39A-212ENST00000497993 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.25□□□□□ -0.77
TMEM39A-212ENST00000497993 IFT140Q96RY7 1462 aa10.24□□□□□ -0.77
TMEM39A-212ENST00000497993 POTEJP0CG39 1038 aa10.24□□□□□ -0.77
TMEM39A-212ENST00000497993 C14orf37Q86TY3 774 aa10.23□□□□□ -0.77
TMEM39A-212ENST00000497993 CRISPLD2Q9H0B8 497 aa10.23□□□□□ -0.77
TMEM39A-212ENST00000497993 SCUBE2Q9NQ36 999 aa10.23□□□□□ -0.77
TMEM39A-212ENST00000497993 LHX8Q68G74 356 aa10.22□□□□□ -0.77
TMEM39A-212ENST00000497993 GPHNQ9NQX3 736 aaPredicted RBP10.22□□□□□ -0.77
TMEM39A-212ENST00000497993 TMC2Q8TDI7 906 aa10.21□□□□□ -0.77
TMEM39A-212ENST00000497993 NCKAP5LQ9HCH0 1330 aa10.21□□□□□ -0.78
TMEM39A-212ENST00000497993 EIF4G3O43432 1585 aaKnown RBP10.21□□□□□ -0.78
TMEM39A-212ENST00000497993 BIVM-ERCC5R4GMW8 1640 aa10.21□□□□□ -0.78
TMEM39A-212ENST00000497993 POLA1P09884 1462 aaPredicted RBP10.2□□□□□ -0.78
TMEM39A-212ENST00000497993 CUX1P39880 1505 aa10.19□□□□□ -0.78
TMEM39A-212ENST00000497993 KIF3CO14782 793 aa10.18□□□□□ -0.78
TMEM39A-212ENST00000497993 LARP6Q9BRS8 491 aaKnown RBP10.18□□□□□ -0.78
TMEM39A-212ENST00000497993 WDR70Q9NW82 654 aa10.18□□□□□ -0.78
TMEM39A-212ENST00000497993 MFSD10Q14728 455 aa10.17□□□□□ -0.78
TMEM39A-212ENST00000497993 TMEM92Q6UXU6 159 aa10.17□□□□□ -0.78
TMEM39A-212ENST00000497993 C2orf72A6NCS6 295 aa10.16□□□□□ -0.78
TMEM39A-212ENST00000497993 FOXK1P85037 733 aa10.16□□□□□ -0.78
TMEM39A-212ENST00000497993 DDX27Q96GQ7 796 aaKnown RBP10.16□□□□□ -0.78
TMEM39A-212ENST00000497993 TOP2BQ02880 1626 aa10.15□□□□□ -0.78
TMEM39A-212ENST00000497993 RANGAP1P46060 587 aaPredicted RBP10.15□□□□□ -0.78
TMEM39A-212ENST00000497993 ZNF608Q9ULD9 1512 aaPredicted RBP10.14□□□□□ -0.79
TMEM39A-212ENST00000497993 FGD5Q6ZNL6 1462 aa10.14□□□□□ -0.79
TMEM39A-212ENST00000497993 SLAIN1Q8ND83 568 aa10.13□□□□□ -0.79
TMEM39A-212ENST00000497993 ABCA5Q8WWZ7 1642 aa10.13□□□□□ -0.79
TMEM39A-212ENST00000497993 DSG2Q14126 1118 aa10.12□□□□□ -0.79
TMEM39A-212ENST00000497993 PPP1R15BQ5SWA1 713 aa10.12□□□□□ -0.79
TMEM39A-212ENST00000497993 OTUD5Q96G74 571 aa10.12□□□□□ -0.79
TMEM39A-212ENST00000497993 CHD1O14646 1710 aa10.12□□□□□ -0.79
TMEM39A-212ENST00000497993 PBRM1Q86U86 1689 aa10.12□□□□□ -0.79
TMEM39A-212ENST00000497993 ABCA10Q8WWZ4 1543 aa10.11□□□□□ -0.79
TMEM39A-212ENST00000497993 SYNJ1O43426 1573 aa10.09□□□□□ -0.79
TMEM39A-212ENST00000497993 PLPP6Q8IY26 295 aa10.09□□□□□ -0.79
TMEM39A-212ENST00000497993 MAGI1Q96QZ7 1491 aaPredicted RBP10.07□□□□□ -0.8
TMEM39A-212ENST00000497993 SUPT5HO00267 1087 aaKnown RBP10.07□□□□□ -0.8
TMEM39A-212ENST00000497993 E2F4Q16254 413 aa10.07□□□□□ -0.8
TMEM39A-212ENST00000497993 SOGA1O94964 1423 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms