RNA–Protein interactions for RNA: ENST00000496549.5

CRNKL1-205, Transcript of crooked neck pre-mRNA splicing factor 1, human

TSL 1 (best)

Gene CRNKL1, Length 4,093 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CRNKL1-205	ENST00000496549	ZHX1	Q9UKY1	873 aa	Predicted RBP	10.5	□□□□□ -0.73
CRNKL1-205	ENST00000496549	CHMP4B	Q9H444	224 aa	Known RBP	10.49	□□□□□ -0.73
CRNKL1-205	ENST00000496549	TAF3	Q5VWG9	929 aa		10.49	□□□□□ -0.73
CRNKL1-205	ENST00000496549	VPS8	Q8N3P4	1428 aa		10.48	□□□□□ -0.73
CRNKL1-205	ENST00000496549	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.48	□□□□□ -0.73
CRNKL1-205	ENST00000496549	GOLGA6L22	H0YM25	854 aa		10.48	□□□□□ -0.73
CRNKL1-205	ENST00000496549	SMAP1	Q8IYB5	467 aa	Predicted RBP	10.48	□□□□□ -0.73
CRNKL1-205	ENST00000496549	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.48	□□□□□ -0.73
CRNKL1-205	ENST00000496549	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.47	□□□□□ -0.73
CRNKL1-205	ENST00000496549	PTMS	P20962	102 aa		10.47	□□□□□ -0.73
CRNKL1-205	ENST00000496549	FAM161A	Q3B820	660 aa		10.46	□□□□□ -0.73
CRNKL1-205	ENST00000496549	DCAF11	Q8TEB1	546 aa		10.46	□□□□□ -0.73
CRNKL1-205	ENST00000496549	POGK	Q9P215	609 aa		10.45	□□□□□ -0.74
CRNKL1-205	ENST00000496549	IPO4	Q8TEX9	1081 aa	Known RBP	10.45	□□□□□ -0.74
CRNKL1-205	ENST00000496549	ISY1	Q9ULR0	285 aa	Known RBP	10.44	□□□□□ -0.74
CRNKL1-205	ENST00000496549	RCAN3	Q9UKA8	241 aa		10.43	□□□□□ -0.74
CRNKL1-205	ENST00000496549	CEP164	Q9UPV0	1460 aa		10.43	□□□□□ -0.74
CRNKL1-205	ENST00000496549	HMGXB3	Q12766	1538 aa		10.43	□□□□□ -0.74
CRNKL1-205	ENST00000496549	PTMA	P06454	111 aa	Known RBP	10.43	□□□□□ -0.74
CRNKL1-205	ENST00000496549	CCNB3	Q8WWL7	1395 aa		10.43	□□□□□ -0.74
CRNKL1-205	ENST00000496549	R3HCC1	Q9Y3T6	440 aa	Known RBP	10.43	□□□□□ -0.74
CRNKL1-205	ENST00000496549	TNNT3	P45378	269 aa	Predicted RBP	10.43	□□□□□ -0.74
CRNKL1-205	ENST00000496549	CSPP1	Q1MSJ5	1256 aa		10.43	□□□□□ -0.74
CRNKL1-205	ENST00000496549	EXOC6	Q8TAG9	804 aa		10.43	□□□□□ -0.74
CRNKL1-205	ENST00000496549	DDX11L8	A8MPP1	907 aa		10.42	□□□□□ -0.74
CRNKL1-205	ENST00000496549	APP	P05067	770 aa		10.42	□□□□□ -0.74
CRNKL1-205	ENST00000496549	PRDM10	Q9NQV6	1147 aa		10.42	□□□□□ -0.74
CRNKL1-205	ENST00000496549	ZNF771	Q7L3S4	317 aa	Predicted RBP	10.41	□□□□□ -0.74
CRNKL1-205	ENST00000496549	RAB3GAP2	Q9H2M9	1393 aa		10.41	□□□□□ -0.74
CRNKL1-205	ENST00000496549	RRP1	P56182	461 aa	Known RBP	10.41	□□□□□ -0.74
CRNKL1-205	ENST00000496549	AKNA	Q7Z591	1439 aa		10.39	□□□□□ -0.75
CRNKL1-205	ENST00000496549	SMG6	Q86US8	1419 aa	Known RBP	10.39	□□□□□ -0.75
CRNKL1-205	ENST00000496549	GBP4	Q96PP9	640 aa		10.38	□□□□□ -0.75
CRNKL1-205	ENST00000496549	PRKRIP1	Q9H875	184 aa	Predicted RBP	10.38	□□□□□ -0.75
CRNKL1-205	ENST00000496549	CADPS	Q9ULU8	1353 aa		10.38	□□□□□ -0.75
CRNKL1-205	ENST00000496549	GRPEL1	Q9HAV7	217 aa		10.38	□□□□□ -0.75
CRNKL1-205	ENST00000496549	SETD5	Q9C0A6	1442 aa		10.38	□□□□□ -0.75
CRNKL1-205	ENST00000496549	KLHL34	Q8N239	644 aa		10.38	□□□□□ -0.75
CRNKL1-205	ENST00000496549	PLCD3	Q8N3E9	789 aa		10.38	□□□□□ -0.75
CRNKL1-205	ENST00000496549	BRD2	P25440	801 aa	Known RBP	10.38	□□□□□ -0.75
CRNKL1-205	ENST00000496549	CHAF1A	Q13111	956 aa	Predicted RBP	10.38	□□□□□ -0.75
CRNKL1-205	ENST00000496549	SENP3-EIF4A1	A0A087X0R7	540 aa		10.37	□□□□□ -0.75
CRNKL1-205	ENST00000496549	UQCRHL	A0A096LP55	91 aa		10.37	□□□□□ -0.75
CRNKL1-205	ENST00000496549	UQCRH	P07919	91 aa		10.37	□□□□□ -0.75
CRNKL1-205	ENST00000496549	XRCC6	P12956	609 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
CRNKL1-205	ENST00000496549	LETM1	O95202	739 aa	Predicted RBP	10.37	□□□□□ -0.75
CRNKL1-205	ENST00000496549	KIF20A	O95235	890 aa		10.37	□□□□□ -0.75
CRNKL1-205	ENST00000496549	PEG3	Q9GZU2	1588 aa		10.36	□□□□□ -0.75
CRNKL1-205	ENST00000496549	CCDC66	A2RUB6	948 aa		10.36	□□□□□ -0.75
CRNKL1-205	ENST00000496549	CENPQ	Q7L2Z9	268 aa	Predicted RBP	10.36	□□□□□ -0.75
CRNKL1-205	ENST00000496549	FTSJ3	Q8IY81	847 aa	Known RBP	10.36	□□□□□ -0.75
CRNKL1-205	ENST00000496549	CCDC173	Q0VFZ6	552 aa		10.36	□□□□□ -0.75
CRNKL1-205	ENST00000496549	IRX3	P78415	501 aa	Predicted RBP	10.35	□□□□□ -0.75
CRNKL1-205	ENST00000496549	ZSCAN30	Q86W11	494 aa		10.35	□□□□□ -0.75
CRNKL1-205	ENST00000496549	GTPBP4	Q9BZE4	634 aa	Known RBP	10.35	□□□□□ -0.75
CRNKL1-205	ENST00000496549	TRAK2	O60296	914 aa		10.35	□□□□□ -0.75
CRNKL1-205	ENST00000496549	PPP4R3B	Q5MIZ7	849 aa		10.35	□□□□□ -0.75
CRNKL1-205	ENST00000496549	HSPA5	P11021	654 aa	Known RBP	10.35	□□□□□ -0.75
CRNKL1-205	ENST00000496549	SKOR2	Q2VWA4	1001 aa	Predicted RBP	10.35	□□□□□ -0.75
CRNKL1-205	ENST00000496549	SPRYD3	Q8NCJ5	442 aa		10.35	□□□□□ -0.75
CRNKL1-205	ENST00000496549	HSCB	Q8IWL3	235 aa		10.34	□□□□□ -0.75
CRNKL1-205	ENST00000496549	KTN1	Q86UP2	1357 aa	Known RBP	10.34	□□□□□ -0.75
CRNKL1-205	ENST00000496549	CCDC88B	A6NC98	1476 aa		10.34	□□□□□ -0.75
CRNKL1-205	ENST00000496549	PDS5B	Q9NTI5	1447 aa		10.33	□□□□□ -0.76
CRNKL1-205	ENST00000496549	DYNC1I1	O14576	645 aa		10.33	□□□□□ -0.76
CRNKL1-205	ENST00000496549	TOP2A	P11388	1531 aa	Known RBP	10.32	□□□□□ -0.76
CRNKL1-205	ENST00000496549	TERF1	P54274	439 aa		10.32	□□□□□ -0.76
CRNKL1-205	ENST00000496549	KIAA2012	Q0VF49	1180 aa		10.32	□□□□□ -0.76
CRNKL1-205	ENST00000496549	UTP14C	Q5TAP6	766 aa	Known RBP	10.32	□□□□□ -0.76
CRNKL1-205	ENST00000496549	CHMP5	Q9NZZ3	219 aa		10.32	□□□□□ -0.76
CRNKL1-205	ENST00000496549	SOGA1	O94964	1423 aa		10.32	□□□□□ -0.76
CRNKL1-205	ENST00000496549	PDE3B	Q13370	1112 aa		10.32	□□□□□ -0.76
CRNKL1-205	ENST00000496549	NCBP3	Q53F19	620 aa	Known RBP	10.32	□□□□□ -0.76
CRNKL1-205	ENST00000496549	CGN	Q9P2M7	1197 aa	Known RBP	10.32	□□□□□ -0.76
CRNKL1-205	ENST00000496549	WDR97	A6NE52	1622 aa		10.31	□□□□□ -0.76
CRNKL1-205	ENST00000496549	PANK2	Q9BZ23	570 aa		10.31	□□□□□ -0.76
CRNKL1-205	ENST00000496549	NASP	P49321	788 aa	Predicted RBP	10.31	□□□□□ -0.76
CRNKL1-205	ENST00000496549	VGLL3	A8MV65	326 aa		10.3	□□□□□ -0.76
CRNKL1-205	ENST00000496549	PRDM4	Q9UKN5	801 aa		10.3	□□□□□ -0.76
CRNKL1-205	ENST00000496549	MCM4	P33991	863 aa		10.3	□□□□□ -0.76
CRNKL1-205	ENST00000496549	OFD1	O75665	1012 aa		10.29	□□□□□ -0.76
CRNKL1-205	ENST00000496549	STAC3	Q96MF2	364 aa		10.29	□□□□□ -0.76
CRNKL1-205	ENST00000496549	CCDC94	Q9BW85	323 aa	Predicted RBP	10.29	□□□□□ -0.76
CRNKL1-205	ENST00000496549	CNTLN	Q9NXG0	1405 aa		10.29	□□□□□ -0.76
CRNKL1-205	ENST00000496549	HMGN5	P82970	282 aa	Known RBP	10.28	□□□□□ -0.76
CRNKL1-205	ENST00000496549	FANCD2	Q9BXW9	1451 aa		10.28	□□□□□ -0.76
CRNKL1-205	ENST00000496549	HSP90AB1	P08238	724 aa	Known RBP	10.28	□□□□□ -0.76
CRNKL1-205	ENST00000496549	DMTN	Q08495	405 aa		10.28	□□□□□ -0.76
CRNKL1-205	ENST00000496549	MAPK8IP2	Q13387	824 aa	Predicted RBP	10.28	□□□□□ -0.76
CRNKL1-205	ENST00000496549	DNAJC2	Q99543	621 aa	Known RBP	10.28	□□□□□ -0.76
CRNKL1-205	ENST00000496549	GTF2E1	P29083	439 aa	Predicted RBP	10.28	□□□□□ -0.76
CRNKL1-205	ENST00000496549	CBX1	P83916	185 aa		10.27	□□□□□ -0.77
CRNKL1-205	ENST00000496549	TSPYL1	Q9H0U9	437 aa		10.27	□□□□□ -0.77
CRNKL1-205	ENST00000496549	RSPH4A	Q5TD94	716 aa		10.26	□□□□□ -0.77
CRNKL1-205	ENST00000496549	SASS6	Q6UVJ0	657 aa		10.26	□□□□□ -0.77
CRNKL1-205	ENST00000496549	AEBP1	Q8IUX7	1158 aa		10.26	□□□□□ -0.77
CRNKL1-205	ENST00000496549	CRBN	Q96SW2	442 aa		10.26	□□□□□ -0.77
CRNKL1-205	ENST00000496549		E9PSI1	815 aa		10.25	□□□□□ -0.77
CRNKL1-205	ENST00000496549	CHMP4A	Q9BY43	222 aa		10.25	□□□□□ -0.77
CRNKL1-205	ENST00000496549	LAMC3	Q9Y6N6	1575 aa		10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms