RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 SCAPERQ9BY12 1400 aa24.1■■□□□ 1.45
PRPF40A-211ENST00000493468 C9orf84Q5VXU9 1444 aa24.09■■□□□ 1.45
PRPF40A-211ENST00000493468 ATP10AO60312 1499 aa24.08■■□□□ 1.45
PRPF40A-211ENST00000493468 MYO5CQ9NQX4 1742 aa24.08■■□□□ 1.45
PRPF40A-211ENST00000493468 CDK13Q14004 1512 aaKnown RBP24.08■■□□□ 1.45
PRPF40A-211ENST00000493468 PLPPR3Q6T4P5 718 aa24.07■■□□□ 1.44
PRPF40A-211ENST00000493468 RANGAP1P46060 587 aaPredicted RBP24.04■■□□□ 1.44
PRPF40A-211ENST00000493468 MLECQ14165 292 aa24.04■■□□□ 1.44
PRPF40A-211ENST00000493468 STRCQ7RTU9 1775 aa24.03■■□□□ 1.44
PRPF40A-211ENST00000493468 SETD1BQ9UPS6 1966 aaKnown RBP24.02■■□□□ 1.43
PRPF40A-211ENST00000493468 KDM5CP41229 1560 aa24■■□□□ 1.43
PRPF40A-211ENST00000493468 ZNF518AQ6AHZ1 1483 aa24■■□□□ 1.43
PRPF40A-211ENST00000493468 REREQ9P2R6 1566 aa23.98■■□□□ 1.43
PRPF40A-211ENST00000493468 DMRT2Q9Y5R5 561 aa23.97■■□□□ 1.43
PRPF40A-211ENST00000493468 EFCAB2Q5VUJ9 269 aa23.96■■□□□ 1.43
PRPF40A-211ENST00000493468 UHRF1BP1Q6BDS2 1440 aa23.95■■□□□ 1.42
PRPF40A-211ENST00000493468 KIF14Q15058 1648 aa23.95■■□□□ 1.42
PRPF40A-211ENST00000493468 FMN1Q68DA7 1419 aa23.93■■□□□ 1.42
PRPF40A-211ENST00000493468 DIP2CQ9Y2E4 1556 aa23.92■■□□□ 1.42
PRPF40A-211ENST00000493468 CEBPAP49715 358 aaPredicted RBP23.9■■□□□ 1.42
PRPF40A-211ENST00000493468 DISP3Q9P2K9 1392 aa23.9■■□□□ 1.42
PRPF40A-211ENST00000493468 C3P01024 1663 aa23.89■■□□□ 1.42
PRPF40A-211ENST00000493468 PTPRTO14522 1441 aa23.89■■□□□ 1.41
PRPF40A-211ENST00000493468 ARHGAP5Q13017 1502 aa23.89■■□□□ 1.41
PRPF40A-211ENST00000493468 CDK11AQ9UQ88 783 aaPredicted RBP23.88■■□□□ 1.41
PRPF40A-211ENST00000493468 TROQ12816 1431 aaPredicted RBP23.87■■□□□ 1.41
PRPF40A-211ENST00000493468 ABCA6Q8N139 1617 aa23.87■■□□□ 1.41
PRPF40A-211ENST00000493468 AGLP35573 1532 aa23.86■■□□□ 1.41
PRPF40A-211ENST00000493468 MLH3Q9UHC1 1453 aa23.86■■□□□ 1.41
PRPF40A-211ENST00000493468 SOCS7O14512 581 aa23.85■■□□□ 1.41
PRPF40A-211ENST00000493468 CDC42BPBQ9Y5S2 1711 aa23.84■■□□□ 1.41
PRPF40A-211ENST00000493468 SPATA31D1Q6ZQQ2 1576 aa23.84■■□□□ 1.41
PRPF40A-211ENST00000493468 ILDR2Q71H61 639 aa23.84■■□□□ 1.41
PRPF40A-211ENST00000493468 CLIP1P30622 1438 aa23.84■■□□□ 1.41
PRPF40A-211ENST00000493468 IQSEC2Q5JU85 1478 aa23.83■■□□□ 1.41
PRPF40A-211ENST00000493468 ARHGAP35Q9NRY4 1499 aa23.82■■□□□ 1.4
PRPF40A-211ENST00000493468 LRRIQ1Q96JM4 1722 aa23.82■■□□□ 1.4
PRPF40A-211ENST00000493468 AFAP1Q8N556 730 aa23.82■■□□□ 1.4
PRPF40A-211ENST00000493468 PREX2Q70Z35 1606 aa23.81■■□□□ 1.4
PRPF40A-211ENST00000493468 LTBP4Q8N2S1 1624 aa23.81■■□□□ 1.4
PRPF40A-211ENST00000493468 ABCC1P33527 1531 aa23.79■■□□□ 1.4
PRPF40A-211ENST00000493468 ITSN2Q9NZM3 1697 aa23.79■■□□□ 1.4
PRPF40A-211ENST00000493468 TRAPPC8Q9Y2L5 1435 aa23.78■■□□□ 1.4
PRPF40A-211ENST00000493468 CNTLNQ9NXG0 1405 aa23.76■■□□□ 1.39
PRPF40A-211ENST00000493468 ATP1B4Q9UN42 357 aaPredicted RBP23.76■■□□□ 1.39
PRPF40A-211ENST00000493468 NCOA1Q15788 1441 aa23.76■■□□□ 1.39
PRPF40A-211ENST00000493468 MROH2AA6NES4 1674 aa23.75■■□□□ 1.39
PRPF40A-211ENST00000493468 KIDINS220Q9ULH0 1771 aa23.75■■□□□ 1.39
PRPF40A-211ENST00000493468 MYT1LQ9UL68 1186 aa23.73■■□□□ 1.39
PRPF40A-211ENST00000493468 ESF1Q9H501 851 aaKnown RBP23.7■■□□□ 1.38
PRPF40A-211ENST00000493468 NPATQ14207 1427 aa23.69■■□□□ 1.38
PRPF40A-211ENST00000493468 CDC42BPAQ5VT25 1732 aa23.68■■□□□ 1.38
PRPF40A-211ENST00000493468 UBTFP17480 764 aaKnown RBP23.68■■□□□ 1.38
PRPF40A-211ENST00000493468 CCDC18Q5T9S5 1454 aa23.68■■□□□ 1.38
PRPF40A-211ENST00000493468 CAMSAP1Q5T5Y3 1602 aa23.66■■□□□ 1.38
PRPF40A-211ENST00000493468 ZNF142P52746 1687 aaPredicted RBP23.64■■□□□ 1.38
PRPF40A-211ENST00000493468 SAMD9LQ8IVG5 1584 aa23.63■■□□□ 1.37
PRPF40A-211ENST00000493468 CASKIN1Q8WXD9 1431 aa23.61■■□□□ 1.37
PRPF40A-211ENST00000493468 MYO3AQ8NEV4 1616 aa23.59■■□□□ 1.37
PRPF40A-211ENST00000493468 PLA2R1Q13018 1463 aa23.58■■□□□ 1.37
PRPF40A-211ENST00000493468 PLXNC1O60486 1568 aa23.57■■□□□ 1.36
PRPF40A-211ENST00000493468 SUPT6HQ7KZ85 1726 aaKnown RBP23.56■■□□□ 1.36
PRPF40A-211ENST00000493468 ZMYM3Q14202 1370 aa23.56■■□□□ 1.36
PRPF40A-211ENST00000493468 SYCP2Q9BX26 1530 aa23.55■■□□□ 1.36
PRPF40A-211ENST00000493468 CLTCQ00610 1675 aaKnown RBP23.55■■□□□ 1.36
PRPF40A-211ENST00000493468 INO80Q9ULG1 1556 aaPredicted RBP23.54■■□□□ 1.36
PRPF40A-211ENST00000493468 CEP170BQ9Y4F5 1589 aaPredicted RBP23.53■■□□□ 1.36
PRPF40A-211ENST00000493468 TCOF1Q13428 1488 aaKnown RBP23.53■■□□□ 1.36
PRPF40A-211ENST00000493468 ATP7AQ04656 1500 aa23.53■■□□□ 1.36
PRPF40A-211ENST00000493468 FYCO1Q9BQS8 1478 aa23.52■■□□□ 1.36
PRPF40A-211ENST00000493468 EHMT2Q96KQ7 1210 aa23.52■■□□□ 1.36
PRPF40A-211ENST00000493468 PKD2Q13563 968 aa23.51■■□□□ 1.35
PRPF40A-211ENST00000493468 SPAG9O60271 1321 aaKnown RBP23.5■■□□□ 1.35
PRPF40A-211ENST00000493468 ZNF335Q9H4Z2 1342 aaPredicted RBP23.5■■□□□ 1.35
PRPF40A-211ENST00000493468 GPATCH8Q9UKJ3 1502 aaKnown RBP23.49■■□□□ 1.35
PRPF40A-211ENST00000493468 PTPRKQ15262 1439 aa23.49■■□□□ 1.35
PRPF40A-211ENST00000493468 KIAA1107Q9UPP5 1409 aa23.49■■□□□ 1.35
PRPF40A-211ENST00000493468 PLEKHH2Q8IVE3 1493 aa23.49■■□□□ 1.35
PRPF40A-211ENST00000493468 NCKAP5LQ9HCH0 1330 aa23.48■■□□□ 1.35
PRPF40A-211ENST00000493468 A2MP01023 1474 aa23.47■■□□□ 1.35
PRPF40A-211ENST00000493468 ADGBQ8N7X0 1667 aa23.46■■□□□ 1.35
PRPF40A-211ENST00000493468 UBAP1LF5GYI3 381 aa23.45■■□□□ 1.34
PRPF40A-211ENST00000493468 ZNF777Q9ULD5 760 aaPredicted RBP23.42■■□□□ 1.34
PRPF40A-211ENST00000493468 PPP6R1Q9UPN7 881 aa23.41■■□□□ 1.34
PRPF40A-211ENST00000493468 POLR1AO95602 1720 aaPredicted RBP23.4■■□□□ 1.34
PRPF40A-211ENST00000493468 HNRNPMP52272 730 aaKnown RBP eCLIP23.4■■□□□ 1.342e-7■■■■■ 36.2
PRPF40A-211ENST00000493468 A2ML1A8K2U0 1454 aa23.39■■□□□ 1.34
PRPF40A-211ENST00000493468 DNMT1P26358 1616 aaKnown RBP23.39■■□□□ 1.33
PRPF40A-211ENST00000493468 CPS1P31327 1500 aa23.35■■□□□ 1.33
PRPF40A-211ENST00000493468 CFDP1Q9UEE9 299 aaPredicted RBP23.34■■□□□ 1.33
PRPF40A-211ENST00000493468 MED1Q15648 1581 aaPredicted RBP23.34■■□□□ 1.33
PRPF40A-211ENST00000493468 FAM135AQ9P2D6 1515 aa23.33■■□□□ 1.33
PRPF40A-211ENST00000493468 NEURL4Q96JN8 1562 aa23.33■■□□□ 1.33
PRPF40A-211ENST00000493468 CCNB3Q8WWL7 1395 aa23.33■■□□□ 1.33
PRPF40A-211ENST00000493468 GGT6Q6P531 493 aa23.33■■□□□ 1.33
PRPF40A-211ENST00000493468 RTEL1-TNFRSF6BF6WH68 1400 aa23.3■■□□□ 1.32
PRPF40A-211ENST00000493468 TIAM1Q13009 1591 aa23.28■■□□□ 1.32
PRPF40A-211ENST00000493468 CHIC1Q5VXU3 224 aa23.28■■□□□ 1.32
PRPF40A-211ENST00000493468 MBD5Q9P267 1494 aa23.28■■□□□ 1.32
PRPF40A-211ENST00000493468 SHANK2Q9UPX8 1470 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms