RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 MTUS2Q5JR59 1369 aa29.64■■■□□ 2.33
PTCD3-217ENST00000488801 LRRC9Q6ZRR7 1453 aa29.63■■■□□ 2.33
PTCD3-217ENST00000488801 ARHGAP5Q13017 1502 aa29.6■■■□□ 2.33
PTCD3-217ENST00000488801 AKNAQ7Z591 1439 aa29.59■■■□□ 2.33
PTCD3-217ENST00000488801 GPATCH8Q9UKJ3 1502 aaKnown RBP29.58■■■□□ 2.33
PTCD3-217ENST00000488801 ABCC1P33527 1531 aa29.55■■■□□ 2.32
PTCD3-217ENST00000488801 SAMD9LQ8IVG5 1584 aa29.55■■■□□ 2.32
PTCD3-217ENST00000488801 NCOA2Q15596 1464 aa29.55■■■□□ 2.32
PTCD3-217ENST00000488801 ZMYM4Q5VZL5 1548 aa29.54■■■□□ 2.32
PTCD3-217ENST00000488801 ADGRL1O94910 1474 aa29.53■■■□□ 2.32
PTCD3-217ENST00000488801 DENND4BO75064 1496 aaPredicted RBP29.48■■■□□ 2.31
PTCD3-217ENST00000488801 KDM5CP41229 1560 aa29.47■■■□□ 2.31
PTCD3-217ENST00000488801 POGZQ7Z3K3 1410 aa29.47■■■□□ 2.31
PTCD3-217ENST00000488801 EFCAB2Q5VUJ9 269 aa29.45■■■□□ 2.31
PTCD3-217ENST00000488801 CCNB3Q8WWL7 1395 aa29.44■■■□□ 2.3
PTCD3-217ENST00000488801 ARHGEF40Q8TER5 1519 aa29.44■■■□□ 2.3
PTCD3-217ENST00000488801 KANK4Q5T7N3 995 aaPredicted RBP29.43■■■□□ 2.3
PTCD3-217ENST00000488801 ARHGEF12Q9NZN5 1544 aa29.43■■■□□ 2.3
PTCD3-217ENST00000488801 SCAPERQ9BY12 1400 aa29.42■■■□□ 2.3
PTCD3-217ENST00000488801 SYCP2Q9BX26 1530 aa29.4■■■□□ 2.3
PTCD3-217ENST00000488801 ZNF518AQ6AHZ1 1483 aa29.38■■■□□ 2.29
PTCD3-217ENST00000488801 HECW2Q9P2P5 1572 aa29.37■■■□□ 2.29
PTCD3-217ENST00000488801 RAPGEF3O95398 923 aa29.36■■■□□ 2.29
PTCD3-217ENST00000488801 PLEKHH2Q8IVE3 1493 aa29.36■■■□□ 2.29
PTCD3-217ENST00000488801 MAGI2Q86UL8 1455 aa29.35■■■□□ 2.29
PTCD3-217ENST00000488801 KIAA1107Q9UPP5 1409 aa29.34■■■□□ 2.29
PTCD3-217ENST00000488801 KIDINS220Q9ULH0 1771 aa29.33■■■□□ 2.29
PTCD3-217ENST00000488801 SIGLEC1Q9BZZ2 1709 aa29.32■■■□□ 2.28
PTCD3-217ENST00000488801 ZFYVE16Q7Z3T8 1539 aa29.32■■■□□ 2.28
PTCD3-217ENST00000488801 CAMSAP2Q08AD1 1489 aa29.3■■■□□ 2.28
PTCD3-217ENST00000488801 MYOM3Q5VTT5 1437 aa29.3■■■□□ 2.28
PTCD3-217ENST00000488801 TRAPPC8Q9Y2L5 1435 aa29.3■■■□□ 2.28
PTCD3-217ENST00000488801 APLP2Q06481 763 aa29.3■■■□□ 2.28
PTCD3-217ENST00000488801 INO80Q9ULG1 1556 aaPredicted RBP29.3■■■□□ 2.28
PTCD3-217ENST00000488801 ABCA6Q8N139 1617 aa29.28■■■□□ 2.28
PTCD3-217ENST00000488801 CFDP1Q9UEE9 299 aaPredicted RBP29.28■■■□□ 2.28
PTCD3-217ENST00000488801 ARHGEF5Q12774 1597 aa29.27■■■□□ 2.28
PTCD3-217ENST00000488801 MBD5Q9P267 1494 aa29.27■■■□□ 2.28
PTCD3-217ENST00000488801 MLH3Q9UHC1 1453 aa29.26■■■□□ 2.27
PTCD3-217ENST00000488801 MIA2Q96PC5 1412 aa29.26■■■□□ 2.27
PTCD3-217ENST00000488801 DIP2CQ9Y2E4 1556 aa29.26■■■□□ 2.27
PTCD3-217ENST00000488801 YEATS2Q9ULM3 1422 aa29.24■■■□□ 2.27
PTCD3-217ENST00000488801 REREQ9P2R6 1566 aa29.23■■■□□ 2.27
PTCD3-217ENST00000488801 PTPN23Q9H3S7 1636 aa29.23■■■□□ 2.27
PTCD3-217ENST00000488801 CROCC2H7BZ55 1655 aa29.21■■■□□ 2.27
PTCD3-217ENST00000488801 ZNF644Q9H582 1327 aaPredicted RBP29.19■■■□□ 2.26
PTCD3-217ENST00000488801 ZNF777Q9ULD5 760 aaPredicted RBP29.18■■■□□ 2.26
PTCD3-217ENST00000488801 ATP7AQ04656 1500 aa29.18■■■□□ 2.26
PTCD3-217ENST00000488801 BCORL1Q5H9F3 1711 aa29.17■■■□□ 2.26
PTCD3-217ENST00000488801 TCOF1Q13428 1488 aaKnown RBP29.17■■■□□ 2.26
PTCD3-217ENST00000488801 ADGBQ8N7X0 1667 aa29.16■■■□□ 2.26
PTCD3-217ENST00000488801 AFAP1Q8N556 730 aa29.16■■■□□ 2.26
PTCD3-217ENST00000488801 FGD6Q6ZV73 1430 aa29.16■■■□□ 2.26
PTCD3-217ENST00000488801 CCDC141Q6ZP82 1450 aa29.15■■■□□ 2.26
PTCD3-217ENST00000488801 ADAMTSL3P82987 1691 aa29.14■■■□□ 2.26
PTCD3-217ENST00000488801 MAST1Q9Y2H9 1570 aa29.13■■■□□ 2.25
PTCD3-217ENST00000488801 ATP10AO60312 1499 aa29.12■■■□□ 2.25
PTCD3-217ENST00000488801 C9orf84Q5VXU9 1444 aa29.11■■■□□ 2.25
PTCD3-217ENST00000488801 HNRNPMP52272 730 aaKnown RBP eCLIP29.11■■■□□ 2.25
PTCD3-217ENST00000488801 DNMT1P26358 1616 aaKnown RBP29.11■■■□□ 2.25
PTCD3-217ENST00000488801 PLXNC1O60486 1568 aa29.1■■■□□ 2.25
PTCD3-217ENST00000488801 RTEL1-TNFRSF6BF6WH68 1400 aa29.06■■■□□ 2.24
PTCD3-217ENST00000488801 AGLP35573 1532 aa29.04■■■□□ 2.24
PTCD3-217ENST00000488801 SHANK2Q9UPX8 1470 aa29.02■■■□□ 2.24
PTCD3-217ENST00000488801 FER1L4A9Z1Z3 1794 aa29.01■■■□□ 2.23
PTCD3-217ENST00000488801 SPAG9O60271 1321 aaKnown RBP29.01■■■□□ 2.23
PTCD3-217ENST00000488801 MADDQ8WXG6 1647 aa29.01■■■□□ 2.23
PTCD3-217ENST00000488801 RSPH4AQ5TD94 716 aa29■■■□□ 2.23
PTCD3-217ENST00000488801 KDM4FA0A1W2PPD8 638 aa28.99■■■□□ 2.23
PTCD3-217ENST00000488801 ABCC5O15440 1437 aa28.94■■■□□ 2.22
PTCD3-217ENST00000488801 DAPK1P53355 1430 aa28.94■■■□□ 2.22
PTCD3-217ENST00000488801 RIMS1Q86UR5 1692 aaKnown RBP28.93■■■□□ 2.22
PTCD3-217ENST00000488801 A2MP01023 1474 aa28.92■■■□□ 2.22
PTCD3-217ENST00000488801 EIF2AK4Q9P2K8 1649 aaKnown RBP28.89■■■□□ 2.22
PTCD3-217ENST00000488801 RRBP1Q9P2E9 1410 aaKnown RBP28.86■■■□□ 2.21
PTCD3-217ENST00000488801 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.86■■■□□ 2.21
PTCD3-217ENST00000488801 PPARGC1BQ86YN6 1023 aaKnown RBP28.84■■■□□ 2.21
PTCD3-217ENST00000488801 MYT1LQ9UL68 1186 aa28.84■■■□□ 2.21
PTCD3-217ENST00000488801 ADGRL2O95490 1459 aa28.84■■■□□ 2.21
PTCD3-217ENST00000488801 RNF17Q9BXT8 1623 aaKnown RBP28.83■■■□□ 2.21
PTCD3-217ENST00000488801 MROH2AA6NES4 1674 aa28.82■■■□□ 2.2
PTCD3-217ENST00000488801 ARID4BQ4LE39 1312 aaPredicted RBP28.81■■■□□ 2.2
PTCD3-217ENST00000488801 DHX29Q7Z478 1369 aaKnown RBP28.8■■■□□ 2.2
PTCD3-217ENST00000488801 TSPY4P0CV99 314 aa28.8■■■□□ 2.2
PTCD3-217ENST00000488801 TSPY10P0CW01 314 aa28.8■■■□□ 2.2
PTCD3-217ENST00000488801 DUOX2Q9NRD8 1548 aa28.79■■■□□ 2.2
PTCD3-217ENST00000488801 PTPRMP28827 1452 aa28.78■■■□□ 2.2
PTCD3-217ENST00000488801 C3P01024 1663 aa28.76■■■□□ 2.19
PTCD3-217ENST00000488801 DEPDC5O75140 1603 aa28.76■■■□□ 2.19
PTCD3-217ENST00000488801 MROH1Q8NDA8 1641 aa28.76■■■□□ 2.19
PTCD3-217ENST00000488801 FAM135AQ9P2D6 1515 aa28.75■■■□□ 2.19
PTCD3-217ENST00000488801 CLTCQ00610 1675 aaKnown RBP28.75■■■□□ 2.19
PTCD3-217ENST00000488801 PTPRKQ15262 1439 aa28.75■■■□□ 2.19
PTCD3-217ENST00000488801 NCOA1Q15788 1441 aa28.72■■■□□ 2.19
PTCD3-217ENST00000488801 FAM50AQ14320 339 aaKnown RBP28.71■■■□□ 2.19
PTCD3-217ENST00000488801 ZC3H13Q5T200 1668 aaKnown RBP28.7■■■□□ 2.19
PTCD3-217ENST00000488801 ERBINQ96RT1 1412 aa28.7■■■□□ 2.19
PTCD3-217ENST00000488801 KIF15Q9NS87 1388 aa28.7■■■□□ 2.18
PTCD3-217ENST00000488801 PRDM15P57071 1507 aaPredicted RBP28.67■■■□□ 2.18
PTCD3-217ENST00000488801 ANKRD30AQ9BXX3 1397 aa28.66■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms