RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-205ENST00000486941 FAM205CA6NFA0 338 aa11.75□□□□□ -0.53
SNRNP40-205ENST00000486941 HOXB1P14653 301 aaPredicted RBP11.75□□□□□ -0.53
SNRNP40-205ENST00000486941 KRTAP3-3Q9BYR6 98 aa11.73□□□□□ -0.53
SNRNP40-205ENST00000486941 KRTAP3-2Q9BYR7 98 aa11.73□□□□□ -0.53
SNRNP40-205ENST00000486941 KIF3CO14782 793 aa11.71□□□□□ -0.53
SNRNP40-205ENST00000486941 DOK7Q18PE1 504 aa11.7□□□□□ -0.54
SNRNP40-205ENST00000486941 GPR153Q6NV75 609 aa11.69□□□□□ -0.54
SNRNP40-205ENST00000486941 SPNS2Q8IVW8 549 aa11.69□□□□□ -0.54
SNRNP40-205ENST00000486941 ZNF710Q8N1W2 664 aa11.68□□□□□ -0.54
SNRNP40-205ENST00000486941 C2orf72A6NCS6 295 aa11.66□□□□□ -0.54
SNRNP40-205ENST00000486941 HS6ST3Q8IZP7 471 aa11.66□□□□□ -0.54
SNRNP40-205ENST00000486941 KHSRPQ92945 711 aaKnown RBP eCLIP11.65□□□□□ -0.54
SNRNP40-205ENST00000486941 NKX1-1Q15270 411 aaPredicted RBP11.64□□□□□ -0.55
SNRNP40-205ENST00000486941 MMRN1Q13201 1228 aa11.62□□□□□ -0.55
SNRNP40-205ENST00000486941 ARSIQ5FYB1 569 aa11.62□□□□□ -0.55
SNRNP40-205ENST00000486941 CHGAP10645 457 aaKnown RBP11.6□□□□□ -0.55
SNRNP40-205ENST00000486941 ZSWIM6Q9HCJ5 1215 aa11.6□□□□□ -0.55
SNRNP40-205ENST00000486941 ERBB3P21860 1342 aa11.59□□□□□ -0.55
SNRNP40-205ENST00000486941 VARS2Q5ST30 1063 aaKnown RBP11.58□□□□□ -0.56
SNRNP40-205ENST00000486941 RIMBP2O15034 1052 aa11.57□□□□□ -0.56
SNRNP40-205ENST00000486941 DNAJC5Q9H3Z4 198 aa11.55□□□□□ -0.56
SNRNP40-205ENST00000486941 SLC34A2O95436 690 aa11.49□□□□□ -0.57
SNRNP40-205ENST00000486941 ZNF687Q8N1G0 1237 aa11.49□□□□□ -0.57
SNRNP40-205ENST00000486941 TMC2Q8TDI7 906 aa11.49□□□□□ -0.57
SNRNP40-205ENST00000486941 NUDT7P0C024 238 aa11.48□□□□□ -0.57
SNRNP40-205ENST00000486941 PCDHGA4Q9Y5G9 962 aa11.48□□□□□ -0.57
SNRNP40-205ENST00000486941 ZNF316A6NFI3 1004 aaPredicted RBP11.47□□□□□ -0.57
SNRNP40-205ENST00000486941 KDM4FA0A1W2PPD8 638 aa11.45□□□□□ -0.58
SNRNP40-205ENST00000486941 POTEEQ6S8J3 1075 aa11.44□□□□□ -0.58
SNRNP40-205ENST00000486941 FOXK1P85037 733 aa11.43□□□□□ -0.58
SNRNP40-205ENST00000486941 DSG2Q14126 1118 aa11.43□□□□□ -0.58
SNRNP40-205ENST00000486941 GPHNQ9NQX3 736 aaPredicted RBP11.43□□□□□ -0.58
SNRNP40-205ENST00000486941 LHX6Q9UPM6 363 aa11.43□□□□□ -0.58
SNRNP40-205ENST00000486941 GTPBP6O43824 516 aaPredicted RBP11.42□□□□□ -0.58
SNRNP40-205ENST00000486941 PLPP6Q8IY26 295 aa11.41□□□□□ -0.58
SNRNP40-205ENST00000486941 PTCD2Q8WV60 388 aaKnown RBP11.39□□□□□ -0.59
SNRNP40-205ENST00000486941 CRISPLD2Q9H0B8 497 aa11.36□□□□□ -0.59
SNRNP40-205ENST00000486941 NCKAP5LQ9HCH0 1330 aa11.35□□□□□ -0.59
SNRNP40-205ENST00000486941 AXIN2Q9Y2T1 843 aa11.34□□□□□ -0.59
SNRNP40-205ENST00000486941 LSM11P83369 360 aaKnown RBP eCLIP11.3□□□□□ -0.6
SNRNP40-205ENST00000486941 ANKRD13DQ6ZTN6 518 aa11.3□□□□□ -0.6
SNRNP40-205ENST00000486941 OXER1Q8TDS5 423 aa11.29□□□□□ -0.6
SNRNP40-205ENST00000486941 CADPS2Q86UW7 1296 aa11.27□□□□□ -0.61
SNRNP40-205ENST00000486941 DCAF8L2P0C7V8 631 aa11.26□□□□□ -0.61
SNRNP40-205ENST00000486941 PPP1R15BQ5SWA1 713 aa11.25□□□□□ -0.61
SNRNP40-205ENST00000486941 RNF166Q96A37 237 aaPredicted RBP11.25□□□□□ -0.61
SNRNP40-205ENST00000486941 RYDENQ9NUL5 291 aaKnown RBP11.25□□□□□ -0.61
SNRNP40-205ENST00000486941 MYT1LQ9UL68 1186 aa11.25□□□□□ -0.61
SNRNP40-205ENST00000486941 UPF1Q92900 1129 aaKnown RBP eCLIP11.24□□□□□ -0.61
SNRNP40-205ENST00000486941 PBX2P40425 430 aa11.22□□□□□ -0.61
SNRNP40-205ENST00000486941 PSEN2P49810 448 aa11.21□□□□□ -0.61
SNRNP40-205ENST00000486941 DMRTA1Q5VZB9 504 aa11.21□□□□□ -0.61
SNRNP40-205ENST00000486941 PDE4AP27815 886 aa11.2□□□□□ -0.62
SNRNP40-205ENST00000486941 LARP6Q9BRS8 491 aaKnown RBP11.2□□□□□ -0.62
SNRNP40-205ENST00000486941 ARHGAP33O14559 1287 aa11.18□□□□□ -0.62
SNRNP40-205ENST00000486941 MFSD10Q14728 455 aa11.18□□□□□ -0.62
SNRNP40-205ENST00000486941 EMILIN3Q9NT22 766 aa11.17□□□□□ -0.62
SNRNP40-205ENST00000486941 TBC1D12O60347 775 aa11.16□□□□□ -0.62
SNRNP40-205ENST00000486941 PSDA5PKW4 1024 aaPredicted RBP11.15□□□□□ -0.62
SNRNP40-205ENST00000486941 ADGRD1Q6QNK2 874 aa11.14□□□□□ -0.63
SNRNP40-205ENST00000486941 DDX27Q96GQ7 796 aaKnown RBP11.14□□□□□ -0.63
SNRNP40-205ENST00000486941 ANO8Q9HCE9 1232 aaPredicted RBP11.14□□□□□ -0.63
SNRNP40-205ENST00000486941 HRO43593 1189 aa11.13□□□□□ -0.63
SNRNP40-205ENST00000486941 PTGER2P43116 358 aa11.13□□□□□ -0.63
SNRNP40-205ENST00000486941 PPP4R3BQ5MIZ7 849 aa11.11□□□□□ -0.63
SNRNP40-205ENST00000486941 RTN4Q9NQC3 1192 aaKnown RBP11.11□□□□□ -0.63
SNRNP40-205ENST00000486941 FOSBP53539 338 aa11.1□□□□□ -0.63
SNRNP40-205ENST00000486941 EVI5O60447 810 aa11.09□□□□□ -0.63
SNRNP40-205ENST00000486941 ZNF454Q8N9F8 522 aa11.09□□□□□ -0.63
SNRNP40-205ENST00000486941 KCNK17Q96T54 332 aa11.08□□□□□ -0.64
SNRNP40-205ENST00000486941 TK2O00142 265 aa11.07□□□□□ -0.64
SNRNP40-205ENST00000486941 BBXQ8WY36 941 aaPredicted RBP11.07□□□□□ -0.64
SNRNP40-205ENST00000486941 BCL2L12Q9HB09 334 aa11.05□□□□□ -0.64
SNRNP40-205ENST00000486941 ADAM33Q9BZ11 813 aa11.04□□□□□ -0.64
SNRNP40-205ENST00000486941 VPS9D1Q9Y2B5 631 aa11.03□□□□□ -0.64
SNRNP40-205ENST00000486941 MAP3K9P80192 1104 aa11.02□□□□□ -0.65
SNRNP40-205ENST00000486941 CAMK2BQ13554 666 aa11.02□□□□□ -0.65
SNRNP40-205ENST00000486941 JPH4Q96JJ6 628 aa11.01□□□□□ -0.65
SNRNP40-205ENST00000486941 PCDHGA10Q9Y5H3 936 aa11□□□□□ -0.65
SNRNP40-205ENST00000486941 AMER1Q5JTC6 1135 aaPredicted RBP10.98□□□□□ -0.65
SNRNP40-205ENST00000486941 ZBED2Q9BTP6 218 aa10.98□□□□□ -0.65
SNRNP40-205ENST00000486941 BHMG1C9JSJ3 638 aaPredicted RBP10.97□□□□□ -0.65
SNRNP40-205ENST00000486941 ZDHHC16Q969W1 377 aa10.97□□□□□ -0.65
SNRNP40-205ENST00000486941 DPYSL4O14531 572 aa10.95□□□□□ -0.66
SNRNP40-205ENST00000486941 SLC4A5Q9BY07 1137 aa10.95□□□□□ -0.66
SNRNP40-205ENST00000486941 COL9A1P20849 921 aa10.94□□□□□ -0.66
SNRNP40-205ENST00000486941 PTPREP23469 700 aa10.94□□□□□ -0.66
SNRNP40-205ENST00000486941 SPRYD3Q8NCJ5 442 aa10.93□□□□□ -0.66
SNRNP40-205ENST00000486941 KCTD12Q96CX2 325 aaKnown RBP10.92□□□□□ -0.66
SNRNP40-205ENST00000486941 HCSTQ9UBK5 93 aa10.92□□□□□ -0.66
SNRNP40-205ENST00000486941 PHF14O94880 888 aa10.88□□□□□ -0.67
SNRNP40-205ENST00000486941 PROX2Q3B8N5 592 aa10.88□□□□□ -0.67
SNRNP40-205ENST00000486941 PAXIP1Q6ZW49 1069 aaPredicted RBP10.88□□□□□ -0.67
SNRNP40-205ENST00000486941 TYW1BQ6NUM6 668 aa10.86□□□□□ -0.67
SNRNP40-205ENST00000486941 KCNH8Q96L42 1107 aa10.86□□□□□ -0.67
SNRNP40-205ENST00000486941 CFAP44Q96MT7 982 aa10.86□□□□□ -0.67
SNRNP40-205ENST00000486941 PPP1R3GB7ZBB8 358 aa10.84□□□□□ -0.67
SNRNP40-205ENST00000486941 DDX12PQ92771 950 aa10.84□□□□□ -0.67
SNRNP40-205ENST00000486941 PLA2G2EQ9NZK7 142 aa10.84□□□□□ -0.67
SNRNP40-205ENST00000486941 PRIM1P49642 420 aaKnown RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms