RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 DOK7Q18PE1 504 aa11□□□□□ -0.65
VPS13A-211ENST00000484581 ERBB3P21860 1342 aa10.99□□□□□ -0.65
VPS13A-211ENST00000484581 STK25O00506 426 aa10.98□□□□□ -0.65
VPS13A-211ENST00000484581 NLRP6P59044 892 aa10.98□□□□□ -0.65
VPS13A-211ENST00000484581 PKD2Q13563 968 aa10.97□□□□□ -0.65
VPS13A-211ENST00000484581 MICALL2Q8IY33 904 aa10.97□□□□□ -0.65
VPS13A-211ENST00000484581 MS4A4AQ96JQ5 239 aa10.96□□□□□ -0.65
VPS13A-211ENST00000484581 RIMBP2O15034 1052 aa10.93□□□□□ -0.66
VPS13A-211ENST00000484581 RGL2O15211 777 aa10.93□□□□□ -0.66
VPS13A-211ENST00000484581 RNF166Q96A37 237 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-211ENST00000484581 VARS2Q5ST30 1063 aaKnown RBP10.92□□□□□ -0.66
VPS13A-211ENST00000484581 FBXO22Q8NEZ5 403 aa10.89□□□□□ -0.67
VPS13A-211ENST00000484581 TMEM92Q6UXU6 159 aa10.87□□□□□ -0.67
VPS13A-211ENST00000484581 MFRPQ9BY79 579 aa10.87□□□□□ -0.67
VPS13A-211ENST00000484581 MYT1LQ9UL68 1186 aa10.87□□□□□ -0.67
VPS13A-211ENST00000484581 ZSWIM6Q9HCJ5 1215 aa10.86□□□□□ -0.67
VPS13A-211ENST00000484581 ZNF687Q8N1G0 1237 aa10.84□□□□□ -0.67
VPS13A-211ENST00000484581 GPR153Q6NV75 609 aa10.82□□□□□ -0.68
VPS13A-211ENST00000484581 PTGER2P43116 358 aa10.77□□□□□ -0.69
VPS13A-211ENST00000484581 ARSIQ5FYB1 569 aa10.74□□□□□ -0.69
VPS13A-211ENST00000484581 TMC2Q8TDI7 906 aa10.72□□□□□ -0.69
VPS13A-211ENST00000484581 C2orf72A6NCS6 295 aa10.71□□□□□ -0.69
VPS13A-211ENST00000484581 CHGAP10645 457 aaKnown RBP10.71□□□□□ -0.69
VPS13A-211ENST00000484581 ANKRD13DQ6ZTN6 518 aa10.71□□□□□ -0.69
VPS13A-211ENST00000484581 HS6ST3Q8IZP7 471 aa10.71□□□□□ -0.69
VPS13A-211ENST00000484581 PPP1R37O75864 691 aa10.69□□□□□ -0.7
VPS13A-211ENST00000484581 KHSRPQ92945 711 aaKnown RBP eCLIP10.69□□□□□ -0.72e-8■□□□□ 10.7
VPS13A-211ENST00000484581 ZNF316A6NFI3 1004 aaPredicted RBP10.68□□□□□ -0.7
VPS13A-211ENST00000484581 KIF3CO14782 793 aa10.68□□□□□ -0.7
VPS13A-211ENST00000484581 LSM11P83369 360 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS13A-211ENST00000484581 SLC34A2O95436 690 aa10.6□□□□□ -0.71
VPS13A-211ENST00000484581 RYDENQ9NUL5 291 aaKnown RBP10.6□□□□□ -0.71
VPS13A-211ENST00000484581 NUDT7P0C024 238 aa10.58□□□□□ -0.72
VPS13A-211ENST00000484581 PCDHGA4Q9Y5G9 962 aa10.58□□□□□ -0.72
VPS13A-211ENST00000484581 PBX2P40425 430 aa10.57□□□□□ -0.72
VPS13A-211ENST00000484581 POTEEQ6S8J3 1075 aa10.55□□□□□ -0.72
VPS13A-211ENST00000484581 DNAJC5Q9H3Z4 198 aa10.55□□□□□ -0.72
VPS13A-211ENST00000484581 NKX1-1Q15270 411 aaPredicted RBP10.54□□□□□ -0.72
VPS13A-211ENST00000484581 GPHNQ9NQX3 736 aaPredicted RBP10.54□□□□□ -0.72
VPS13A-211ENST00000484581 LHX6Q9UPM6 363 aa10.53□□□□□ -0.72
VPS13A-211ENST00000484581 AXIN2Q9Y2T1 843 aa10.53□□□□□ -0.72
VPS13A-211ENST00000484581 DCAF8L2P0C7V8 631 aa10.52□□□□□ -0.73
VPS13A-211ENST00000484581 FOXK1P85037 733 aa10.52□□□□□ -0.73
VPS13A-211ENST00000484581 PLPP6Q8IY26 295 aa10.52□□□□□ -0.73
VPS13A-211ENST00000484581 PLA2G2EQ9NZK7 142 aa10.52□□□□□ -0.73
VPS13A-211ENST00000484581 TBC1D12O60347 775 aa10.49□□□□□ -0.73
VPS13A-211ENST00000484581 HCSTQ9UBK5 93 aa10.49□□□□□ -0.73
VPS13A-211ENST00000484581 DSG2Q14126 1118 aa10.48□□□□□ -0.73
VPS13A-211ENST00000484581 PTCD2Q8WV60 388 aaKnown RBP10.48□□□□□ -0.73
VPS13A-211ENST00000484581 PSDA5PKW4 1024 aaPredicted RBP10.47□□□□□ -0.73
VPS13A-211ENST00000484581 ADGRD1Q6QNK2 874 aa10.44□□□□□ -0.74
VPS13A-211ENST00000484581 ARHGAP33O14559 1287 aa10.42□□□□□ -0.74
VPS13A-211ENST00000484581 PDE4AP27815 886 aa10.42□□□□□ -0.74
VPS13A-211ENST00000484581 GTPBP6O43824 516 aaPredicted RBP10.41□□□□□ -0.74
VPS13A-211ENST00000484581 KDM4FA0A1W2PPD8 638 aa10.39□□□□□ -0.75
VPS13A-211ENST00000484581 CRISPLD2Q9H0B8 497 aa10.39□□□□□ -0.75
VPS13A-211ENST00000484581 PPP1R15BQ5SWA1 713 aa10.38□□□□□ -0.75
VPS13A-211ENST00000484581 PPP4R3BQ5MIZ7 849 aa10.37□□□□□ -0.75
VPS13A-211ENST00000484581 UPF1Q92900 1129 aaKnown RBP eCLIP10.37□□□□□ -0.75
VPS13A-211ENST00000484581 TK2O00142 265 aa10.36□□□□□ -0.75
VPS13A-211ENST00000484581 OXER1Q8TDS5 423 aa10.36□□□□□ -0.75
VPS13A-211ENST00000484581 HRO43593 1189 aa10.35□□□□□ -0.75
VPS13A-211ENST00000484581 DMRTA1Q5VZB9 504 aa10.35□□□□□ -0.75
VPS13A-211ENST00000484581 LARP6Q9BRS8 491 aaKnown RBP10.34□□□□□ -0.75
VPS13A-211ENST00000484581 NCKAP5LQ9HCH0 1330 aa10.33□□□□□ -0.76
VPS13A-211ENST00000484581 PSEN2P49810 448 aa10.33□□□□□ -0.76
VPS13A-211ENST00000484581 KCNH8Q96L42 1107 aa10.33□□□□□ -0.76
VPS13A-211ENST00000484581 DDX27Q96GQ7 796 aaKnown RBP10.31□□□□□ -0.76
VPS13A-211ENST00000484581 KCTD12Q96CX2 325 aaKnown RBP10.3□□□□□ -0.76
VPS13A-211ENST00000484581 ZNF454Q8N9F8 522 aa10.29□□□□□ -0.76
VPS13A-211ENST00000484581 STAC3Q96MF2 364 aa10.29□□□□□ -0.76
VPS13A-211ENST00000484581 PLCB2Q00722 1185 aa10.28□□□□□ -0.76
VPS13A-211ENST00000484581 KCNK17Q96T54 332 aa10.27□□□□□ -0.77
VPS13A-211ENST00000484581 MAP3K9P80192 1104 aa10.26□□□□□ -0.77
VPS13A-211ENST00000484581 EVI5O60447 810 aa10.24□□□□□ -0.77
VPS13A-211ENST00000484581 MFSD10Q14728 455 aa10.24□□□□□ -0.77
VPS13A-211ENST00000484581 FOSBP53539 338 aa10.22□□□□□ -0.77
VPS13A-211ENST00000484581 BBXQ8WY36 941 aaPredicted RBP10.22□□□□□ -0.77
VPS13A-211ENST00000484581 ANO8Q9HCE9 1232 aaPredicted RBP10.22□□□□□ -0.77
VPS13A-211ENST00000484581 BCL2L12Q9HB09 334 aa10.21□□□□□ -0.77
VPS13A-211ENST00000484581 PTPREP23469 700 aa10.2□□□□□ -0.78
VPS13A-211ENST00000484581 CADPS2Q86UW7 1296 aa10.2□□□□□ -0.78
VPS13A-211ENST00000484581 JPH4Q96JJ6 628 aa10.2□□□□□ -0.78
VPS13A-211ENST00000484581 VPS9D1Q9Y2B5 631 aa10.19□□□□□ -0.78
VPS13A-211ENST00000484581 PTPN5P54829 565 aa10.18□□□□□ -0.78
VPS13A-211ENST00000484581 ZDHHC16Q969W1 377 aa10.18□□□□□ -0.78
VPS13A-211ENST00000484581 EMILIN3Q9NT22 766 aa10.17□□□□□ -0.78
VPS13A-211ENST00000484581 RGS20O76081 388 aa10.16□□□□□ -0.78
VPS13A-211ENST00000484581 IFFO2Q5TF58 517 aa10.15□□□□□ -0.78
VPS13A-211ENST00000484581 SLC4A5Q9BY07 1137 aa10.15□□□□□ -0.78
VPS13A-211ENST00000484581 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.15□□□□□ -0.78
VPS13A-211ENST00000484581 SPRYD3Q8NCJ5 442 aa10.13□□□□□ -0.79
VPS13A-211ENST00000484581 ADAM33Q9BZ11 813 aa10.13□□□□□ -0.79
VPS13A-211ENST00000484581 GOLGA8CPA6NN73 597 aa10.11□□□□□ -0.79
VPS13A-211ENST00000484581 HAP1P54257 671 aaPredicted RBP10.11□□□□□ -0.79
VPS13A-211ENST00000484581 THSD4Q6ZMP0 1018 aa10.11□□□□□ -0.79
VPS13A-211ENST00000484581 IRX2Q9BZI1 471 aaPredicted RBP10.11□□□□□ -0.79
VPS13A-211ENST00000484581 A0A0G2JS52 829 aa10.1□□□□□ -0.79
VPS13A-211ENST00000484581 ZBED2Q9BTP6 218 aa10.1□□□□□ -0.79
VPS13A-211ENST00000484581 BHMG1C9JSJ3 638 aaPredicted RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms