RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 NEUROD1Q13562 356 aa9.14□□□□□ -0.95
CLK1-210ENST00000473565 ITSN2Q9NZM3 1697 aa9.14□□□□□ -0.95
CLK1-210ENST00000473565 OSCARQ8IYS5 282 aa9.14□□□□□ -0.95
CLK1-210ENST00000473565 CLSPNQ9HAW4 1339 aa9.13□□□□□ -0.95
CLK1-210ENST00000473565 DNMT1P26358 1616 aaKnown RBP9.13□□□□□ -0.95
CLK1-210ENST00000473565 ZCCHC11Q5TAX3 1644 aaKnown RBP9.12□□□□□ -0.95
CLK1-210ENST00000473565 TRIM52Q96A61 297 aa9.12□□□□□ -0.95
CLK1-210ENST00000473565 TTC37Q6PGP7 1564 aa9.11□□□□□ -0.95
CLK1-210ENST00000473565 GCC2Q8IWJ2 1684 aa9.11□□□□□ -0.95
CLK1-210ENST00000473565 HNRNPMP52272 730 aaKnown RBP eCLIP9.1□□□□□ -0.951e-7■■■■□ 21.9
CLK1-210ENST00000473565 CDC42BPBQ9Y5S2 1711 aa9.1□□□□□ -0.95
CLK1-210ENST00000473565 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.1□□□□□ -0.95
CLK1-210ENST00000473565 FOXD1Q16676 465 aa9.09□□□□□ -0.95
CLK1-210ENST00000473565 AKNAQ7Z591 1439 aa9.09□□□□□ -0.95
CLK1-210ENST00000473565 KDM5BQ9UGL1 1544 aa9.08□□□□□ -0.96
CLK1-210ENST00000473565 ZNF316A6NFI3 1004 aaPredicted RBP9.08□□□□□ -0.96
CLK1-210ENST00000473565 UHRF1BP1LA0JNW5 1464 aa9.08□□□□□ -0.96
CLK1-210ENST00000473565 PREX2Q70Z35 1606 aa9.07□□□□□ -0.96
CLK1-210ENST00000473565 SAMD9LQ8IVG5 1584 aa9.07□□□□□ -0.96
CLK1-210ENST00000473565 ARHGAP5Q13017 1502 aa9.07□□□□□ -0.96
CLK1-210ENST00000473565 CROCC2H7BZ55 1655 aa9.07□□□□□ -0.96
CLK1-210ENST00000473565 DENND4BO75064 1496 aaPredicted RBP9.07□□□□□ -0.96
CLK1-210ENST00000473565 ROCK1Q13464 1354 aa9.06□□□□□ -0.96
CLK1-210ENST00000473565 NCOA1Q15788 1441 aa9.06□□□□□ -0.96
CLK1-210ENST00000473565 ADGBQ8N7X0 1667 aa9.05□□□□□ -0.96
CLK1-210ENST00000473565 C9orf84Q5VXU9 1444 aa9.05□□□□□ -0.96
CLK1-210ENST00000473565 MYO5CQ9NQX4 1742 aa9.05□□□□□ -0.96
CLK1-210ENST00000473565 SYCP2Q9BX26 1530 aa9.05□□□□□ -0.96
CLK1-210ENST00000473565 DIEXFQ68CQ4 756 aaKnown RBP9.05□□□□□ -0.96
CLK1-210ENST00000473565 MBD5Q9P267 1494 aa9.04□□□□□ -0.96
CLK1-210ENST00000473565 MPHOSPH9Q99550 1183 aa9.04□□□□□ -0.96
CLK1-210ENST00000473565 TSPY4P0CV99 314 aa9.03□□□□□ -0.96
CLK1-210ENST00000473565 TSPY10P0CW01 314 aa9.03□□□□□ -0.96
CLK1-210ENST00000473565 ANKRD30AQ9BXX3 1397 aa9.03□□□□□ -0.96
CLK1-210ENST00000473565 ADGRL2O95490 1459 aa9.02□□□□□ -0.97
CLK1-210ENST00000473565 WDR7Q9Y4E6 1490 aa9.02□□□□□ -0.97
CLK1-210ENST00000473565 ARHGEF12Q9NZN5 1544 aa9.02□□□□□ -0.97
CLK1-210ENST00000473565 CCDC141Q6ZP82 1450 aa9.02□□□□□ -0.97
CLK1-210ENST00000473565 SLC4A1APQ9BWU0 796 aaKnown RBP9.01□□□□□ -0.97
CLK1-210ENST00000473565 ASXL2Q76L83 1435 aa9.01□□□□□ -0.97
CLK1-210ENST00000473565 PLCH2O75038 1416 aa9.01□□□□□ -0.97
CLK1-210ENST00000473565 ANKRD50Q9ULJ7 1429 aa9.01□□□□□ -0.97
CLK1-210ENST00000473565 KIF15Q9NS87 1388 aa9.01□□□□□ -0.97
CLK1-210ENST00000473565 ARHGEF5Q12774 1597 aa9.01□□□□□ -0.97
CLK1-210ENST00000473565 TONSLQ96HA7 1378 aa9□□□□□ -0.97
CLK1-210ENST00000473565 SHANK2Q9UPX8 1470 aa9□□□□□ -0.97
CLK1-210ENST00000473565 EFCAB2Q5VUJ9 269 aa8.99□□□□□ -0.97
CLK1-210ENST00000473565 PZPP20742 1482 aa8.99□□□□□ -0.97
CLK1-210ENST00000473565 CYB5RLQ6IPT4 315 aa8.99□□□□□ -0.97
CLK1-210ENST00000473565 HIRIP3Q9BW71 556 aaPredicted RBP8.99□□□□□ -0.97
CLK1-210ENST00000473565 NPM1P06748 294 aaKnown RBP eCLIP8.99□□□□□ -0.97
CLK1-210ENST00000473565 PPP1R15AO75807 674 aaPredicted RBP8.98□□□□□ -0.97
CLK1-210ENST00000473565 TRAPPC8Q9Y2L5 1435 aa8.98□□□□□ -0.97
CLK1-210ENST00000473565 AFAP1Q8N556 730 aa8.98□□□□□ -0.97
CLK1-210ENST00000473565 NUP155O75694 1391 aa8.97□□□□□ -0.97
CLK1-210ENST00000473565 ABCC1P33527 1531 aa8.97□□□□□ -0.97
CLK1-210ENST00000473565 PKD2Q13563 968 aa8.97□□□□□ -0.97
CLK1-210ENST00000473565 ANKRD30BQ9BXX2 1392 aa8.96□□□□□ -0.98
CLK1-210ENST00000473565 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.96□□□□□ -0.982e-8■■□□□ 12.7
CLK1-210ENST00000473565 KIAA1107Q9UPP5 1409 aa8.96□□□□□ -0.98
CLK1-210ENST00000473565 FANCAO15360 1455 aa8.95□□□□□ -0.98
CLK1-210ENST00000473565 ABCA9Q8IUA7 1624 aa8.95□□□□□ -0.98
CLK1-210ENST00000473565 PLEKHH2Q8IVE3 1493 aa8.95□□□□□ -0.98
CLK1-210ENST00000473565 RSPH4AQ5TD94 716 aa8.95□□□□□ -0.98
CLK1-210ENST00000473565 TIMELESSQ9UNS1 1208 aa8.94□□□□□ -0.98
CLK1-210ENST00000473565 L3MBTL2Q969R5 705 aa8.94□□□□□ -0.98
CLK1-210ENST00000473565 RIMBP3CA6NJZ7 1639 aa8.94□□□□□ -0.98
CLK1-210ENST00000473565 RIMBP3BA6NNM3 1639 aa8.94□□□□□ -0.98
CLK1-210ENST00000473565 RIMBP3Q9UFD9 1639 aa8.94□□□□□ -0.98
CLK1-210ENST00000473565 MYT1LQ9UL68 1186 aa8.93□□□□□ -0.98
CLK1-210ENST00000473565 MAST1Q9Y2H9 1570 aa8.93□□□□□ -0.98
CLK1-210ENST00000473565 SPAG9O60271 1321 aaKnown RBP8.93□□□□□ -0.98
CLK1-210ENST00000473565 MIER1Q8N108 512 aa8.93□□□□□ -0.98
CLK1-210ENST00000473565 SCAPERQ9BY12 1400 aa8.92□□□□□ -0.98
CLK1-210ENST00000473565 ADGRL1O94910 1474 aa8.92□□□□□ -0.98
CLK1-210ENST00000473565 RPRD2Q5VT52 1461 aaKnown RBP8.91□□□□□ -0.98
CLK1-210ENST00000473565 PLXNC1O60486 1568 aa8.91□□□□□ -0.98
CLK1-210ENST00000473565 ARAP3Q8WWN8 1544 aa8.91□□□□□ -0.98
CLK1-210ENST00000473565 CD109Q6YHK3 1445 aa8.91□□□□□ -0.98
CLK1-210ENST00000473565 ZFYVE16Q7Z3T8 1539 aa8.9□□□□□ -0.99
CLK1-210ENST00000473565 FAM135AQ9P2D6 1515 aa8.9□□□□□ -0.99
CLK1-210ENST00000473565 NBPF8Q3BBV2 869 aa8.89□□□□□ -0.99
CLK1-210ENST00000473565 TEX14Q8IWB6 1497 aa8.89□□□□□ -0.99
CLK1-210ENST00000473565 DUOX2Q9NRD8 1548 aa8.89□□□□□ -0.99
CLK1-210ENST00000473565 ZNF326Q5BKZ1 582 aaKnown RBP8.89□□□□□ -0.99
CLK1-210ENST00000473565 KDM5DQ9BY66 1539 aa8.88□□□□□ -0.99
CLK1-210ENST00000473565 ACIN1Q9UKV3 1341 aaKnown RBP8.88□□□□□ -0.99
CLK1-210ENST00000473565 ATP7AQ04656 1500 aa8.87□□□□□ -0.99
CLK1-210ENST00000473565 UNC13BO14795 1591 aa8.87□□□□□ -0.99
CLK1-210ENST00000473565 DDX10Q13206 875 aaKnown RBP8.87□□□□□ -0.99
CLK1-210ENST00000473565 INO80Q9ULG1 1556 aaPredicted RBP8.86□□□□□ -0.99
CLK1-210ENST00000473565 RAPGEF3O95398 923 aa8.86□□□□□ -0.99
CLK1-210ENST00000473565 ERBINQ96RT1 1412 aa8.86□□□□□ -0.99
CLK1-210ENST00000473565 YTHDC1Q96MU7 727 aaKnown RBP8.85□□□□□ -0.99
CLK1-210ENST00000473565 KIF3BO15066 747 aa8.85□□□□□ -0.99
CLK1-210ENST00000473565 KDM2AQ9Y2K7 1162 aa8.85□□□□□ -0.99
CLK1-210ENST00000473565 RTEL1-TNFRSF6BF6WH68 1400 aa8.85□□□□□ -0.99
CLK1-210ENST00000473565 HSPA5P11021 654 aaKnown RBP8.84□□□□□ -0.99
CLK1-210ENST00000473565 IQGAP3Q86VI3 1631 aa8.84□□□□□ -0.99
CLK1-210ENST00000473565 KIDINS220Q9ULH0 1771 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms