RNA–Protein interactions for RNA: ENST00000463622.6

SCFD1-204, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 1,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-204ENST00000463622 DNAJC5Q9H3Z4 198 aa8.37□□□□□ -1.07
SCFD1-204ENST00000463622 C2orf72A6NCS6 295 aa8.35□□□□□ -1.07
SCFD1-204ENST00000463622 GTPBP6O43824 516 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-204ENST00000463622 ZNF710Q8N1W2 664 aa8.33□□□□□ -1.08
SCFD1-204ENST00000463622 KIF3CO14782 793 aa8.31□□□□□ -1.08
SCFD1-204ENST00000463622 DOK7Q18PE1 504 aa8.31□□□□□ -1.08
SCFD1-204ENST00000463622 EMP3P54852 163 aa8.3□□□□□ -1.08
SCFD1-204ENST00000463622 TMC2Q8TDI7 906 aa8.3□□□□□ -1.08
SCFD1-204ENST00000463622 FAM205CA6NFA0 338 aa8.28□□□□□ -1.08
SCFD1-204ENST00000463622 CDAN1Q8IWY9 1227 aa8.28□□□□□ -1.08
SCFD1-204ENST00000463622 POTEB3A0JP26 581 aa8.27□□□□□ -1.09
SCFD1-204ENST00000463622 POTEBQ6S5H4 581 aa8.27□□□□□ -1.09
SCFD1-204ENST00000463622 KHSRPQ92945 711 aaKnown RBP eCLIP8.27□□□□□ -1.091e-7■■■□□ 15
SCFD1-204ENST00000463622 HOXB1P14653 301 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-204ENST00000463622 RYDENQ9NUL5 291 aaKnown RBP8.27□□□□□ -1.09
SCFD1-204ENST00000463622 ARSIQ5FYB1 569 aa8.26□□□□□ -1.09
SCFD1-204ENST00000463622 RIMBP2O15034 1052 aa8.25□□□□□ -1.09
SCFD1-204ENST00000463622 GPR153Q6NV75 609 aa8.25□□□□□ -1.09
SCFD1-204ENST00000463622 PLSCR2Q9NRY7 297 aa8.25□□□□□ -1.09
SCFD1-204ENST00000463622 ABCC9O60706 1549 aa8.25□□□□□ -1.09
SCFD1-204ENST00000463622 HS3ST6Q96QI5 342 aa8.24□□□□□ -1.09
SCFD1-204ENST00000463622 DSG2Q14126 1118 aa8.23□□□□□ -1.09
SCFD1-204ENST00000463622 BBXQ8WY36 941 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-204ENST00000463622 GPHNQ9NQX3 736 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-204ENST00000463622 PLPP6Q8IY26 295 aa8.22□□□□□ -1.09
SCFD1-204ENST00000463622 ERBB3P21860 1342 aa8.21□□□□□ -1.1
SCFD1-204ENST00000463622 NCKAP5LQ9HCH0 1330 aa8.2□□□□□ -1.1
SCFD1-204ENST00000463622 FOXK1P85037 733 aa8.2□□□□□ -1.1
SCFD1-204ENST00000463622 CADPS2Q86UW7 1296 aa8.2□□□□□ -1.1
SCFD1-204ENST00000463622 ZSWIM6Q9HCJ5 1215 aa8.2□□□□□ -1.1
SCFD1-204ENST00000463622 PCDH10Q9P2E7 1040 aa8.2□□□□□ -1.1
SCFD1-204ENST00000463622 NUDT7P0C024 238 aa8.19□□□□□ -1.1
SCFD1-204ENST00000463622 VARS2Q5ST30 1063 aaKnown RBP8.19□□□□□ -1.1
SCFD1-204ENST00000463622 CRISPLD2Q9H0B8 497 aa8.19□□□□□ -1.1
SCFD1-204ENST00000463622 PCDHGA4Q9Y5G9 962 aa8.19□□□□□ -1.1
SCFD1-204ENST00000463622 CFAP44Q96MT7 982 aa8.17□□□□□ -1.1
SCFD1-204ENST00000463622 LARP6Q9BRS8 491 aaKnown RBP8.17□□□□□ -1.1
SCFD1-204ENST00000463622 SLC34A2O95436 690 aa8.16□□□□□ -1.1
SCFD1-204ENST00000463622 PAXIP1Q6ZW49 1069 aaPredicted RBP8.16□□□□□ -1.1
SCFD1-204ENST00000463622 SPRYD3Q8NCJ5 442 aa8.16□□□□□ -1.1
SCFD1-204ENST00000463622 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.16□□□□□ -1.1
SCFD1-204ENST00000463622 PDE4AP27815 886 aa8.15□□□□□ -1.1
SCFD1-204ENST00000463622 PPP1R15BQ5SWA1 713 aa8.15□□□□□ -1.11
SCFD1-204ENST00000463622 UPF1Q92900 1129 aaKnown RBP eCLIP8.15□□□□□ -1.11
SCFD1-204ENST00000463622 KRTAP3-3Q9BYR6 98 aa8.13□□□□□ -1.11
SCFD1-204ENST00000463622 KRTAP3-2Q9BYR7 98 aa8.13□□□□□ -1.11
SCFD1-204ENST00000463622 ZNF316A6NFI3 1004 aaPredicted RBP8.13□□□□□ -1.11
SCFD1-204ENST00000463622 LHX6Q9UPM6 363 aa8.13□□□□□ -1.11
SCFD1-204ENST00000463622 PTCD2Q8WV60 388 aaKnown RBP8.12□□□□□ -1.11
SCFD1-204ENST00000463622 DDX27Q96GQ7 796 aaKnown RBP8.11□□□□□ -1.11
SCFD1-204ENST00000463622 KDM4FA0A1W2PPD8 638 aa8.08□□□□□ -1.12
SCFD1-204ENST00000463622 ZNF687Q8N1G0 1237 aa8.08□□□□□ -1.12
SCFD1-204ENST00000463622 OXER1Q8TDS5 423 aa8.08□□□□□ -1.12
SCFD1-204ENST00000463622 MFSD10Q14728 455 aa8.07□□□□□ -1.12
SCFD1-204ENST00000463622 SPNS2Q8IVW8 549 aa8.07□□□□□ -1.12
SCFD1-204ENST00000463622 TBC1D12O60347 775 aa8.06□□□□□ -1.12
SCFD1-204ENST00000463622 EMILIN3Q9NT22 766 aa8.05□□□□□ -1.12
SCFD1-204ENST00000463622 AXIN2Q9Y2T1 843 aa8.05□□□□□ -1.12
SCFD1-204ENST00000463622 POTEEQ6S8J3 1075 aa8.03□□□□□ -1.12
SCFD1-204ENST00000463622 MAP3K9P80192 1104 aa8.01□□□□□ -1.13
SCFD1-204ENST00000463622 ANKRD13DQ6ZTN6 518 aa8.01□□□□□ -1.13
SCFD1-204ENST00000463622 EVI5O60447 810 aa8□□□□□ -1.13
SCFD1-204ENST00000463622 MMRN1Q13201 1228 aa8□□□□□ -1.13
SCFD1-204ENST00000463622 TSHZ2Q9NRE2 1034 aa8□□□□□ -1.13
SCFD1-204ENST00000463622 DPYSL4O14531 572 aa7.97□□□□□ -1.13
SCFD1-204ENST00000463622 PSEN2P49810 448 aa7.97□□□□□ -1.13
SCFD1-204ENST00000463622 ZNF454Q8N9F8 522 aa7.97□□□□□ -1.13
SCFD1-204ENST00000463622 CAMK2BQ13554 666 aa7.97□□□□□ -1.13
SCFD1-204ENST00000463622 PPP4R3BQ5MIZ7 849 aa7.96□□□□□ -1.13
SCFD1-204ENST00000463622 PSDA5PKW4 1024 aaPredicted RBP7.95□□□□□ -1.14
SCFD1-204ENST00000463622 LSM11P83369 360 aaKnown RBP eCLIP7.95□□□□□ -1.143e-6■□□□□ 10
SCFD1-204ENST00000463622 ANO8Q9HCE9 1232 aaPredicted RBP7.95□□□□□ -1.14
SCFD1-204ENST00000463622 DMRTA1Q5VZB9 504 aa7.95□□□□□ -1.14
SCFD1-204ENST00000463622 ARHGAP33O14559 1287 aa7.94□□□□□ -1.14
SCFD1-204ENST00000463622 WDR70Q9NW82 654 aa7.94□□□□□ -1.14
SCFD1-204ENST00000463622 CCDC180Q9P1Z9 1646 aa7.94□□□□□ -1.14
SCFD1-204ENST00000463622 FOSBP53539 338 aa7.93□□□□□ -1.14
SCFD1-204ENST00000463622 PBX2P40425 430 aa7.93□□□□□ -1.14
SCFD1-204ENST00000463622 KCNK17Q96T54 332 aa7.92□□□□□ -1.14
SCFD1-204ENST00000463622 E2F4Q16254 413 aa7.91□□□□□ -1.14
SCFD1-204ENST00000463622 ADAM33Q9BZ11 813 aa7.9□□□□□ -1.14
SCFD1-204ENST00000463622 PCDHGA10Q9Y5H3 936 aa7.9□□□□□ -1.14
SCFD1-204ENST00000463622 JPH4Q96JJ6 628 aa7.9□□□□□ -1.15
SCFD1-204ENST00000463622 DDX12PQ92771 950 aa7.89□□□□□ -1.15
SCFD1-204ENST00000463622 ZDHHC16Q969W1 377 aa7.89□□□□□ -1.15
SCFD1-204ENST00000463622 MYT1LQ9UL68 1186 aa7.89□□□□□ -1.15
SCFD1-204ENST00000463622 ADGRD1Q6QNK2 874 aa7.88□□□□□ -1.15
SCFD1-204ENST00000463622 PLCB2Q00722 1185 aa7.88□□□□□ -1.15
SCFD1-204ENST00000463622 BCL2L12Q9HB09 334 aa7.88□□□□□ -1.15
SCFD1-204ENST00000463622 RNF166Q96A37 237 aaPredicted RBP7.87□□□□□ -1.15
SCFD1-204ENST00000463622 PTPREP23469 700 aa7.86□□□□□ -1.15
SCFD1-204ENST00000463622 RBM33Q96EV2 1170 aaKnown RBP7.85□□□□□ -1.15
SCFD1-204ENST00000463622 KCNH8Q96L42 1107 aa7.85□□□□□ -1.15
SCFD1-204ENST00000463622 PHF14O94880 888 aa7.84□□□□□ -1.15
SCFD1-204ENST00000463622 PDIA6Q15084 440 aa7.84□□□□□ -1.16
SCFD1-204ENST00000463622 TYW1BQ6NUM6 668 aa7.83□□□□□ -1.16
SCFD1-204ENST00000463622 HRO43593 1189 aa7.82□□□□□ -1.16
SCFD1-204ENST00000463622 COL9A1P20849 921 aa7.82□□□□□ -1.16
SCFD1-204ENST00000463622 VPS9D1Q9Y2B5 631 aa7.82□□□□□ -1.16
SCFD1-204ENST00000463622 GRXCR2A6NFK2 248 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms