RNA–Protein interactions for RNA: ENST00000455554.2

LINC02540-201, Transcript of long intergenic non-protein coding RNA 2540, humanhuman

TSL 3 BASIC

Gene LINC02540, Length 570 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02540-201ENST00000455554 SOX12O15370 315 aa8.46□□□□□ -1.06
LINC02540-201ENST00000455554 ARSIQ5FYB1 569 aa8.46□□□□□ -1.06
LINC02540-201ENST00000455554 VGFO15240 615 aaPredicted RBP8.45□□□□□ -1.06
LINC02540-201ENST00000455554 RNF166Q96A37 237 aaPredicted RBP8.45□□□□□ -1.06
LINC02540-201ENST00000455554 ZNF687Q8N1G0 1237 aa8.44□□□□□ -1.06
LINC02540-201ENST00000455554 FBXO22Q8NEZ5 403 aa8.44□□□□□ -1.06
LINC02540-201ENST00000455554 ZSWIM6Q9HCJ5 1215 aa8.41□□□□□ -1.06
LINC02540-201ENST00000455554 MFRPQ9BY79 579 aa8.4□□□□□ -1.06
LINC02540-201ENST00000455554 BCL11BQ9C0K0 894 aaPredicted RBP8.4□□□□□ -1.06
LINC02540-201ENST00000455554 MYT1LQ9UL68 1186 aa8.4□□□□□ -1.06
LINC02540-201ENST00000455554 POTEEQ6S8J3 1075 aa8.38□□□□□ -1.07
LINC02540-201ENST00000455554 KIF3CO14782 793 aa8.37□□□□□ -1.07
LINC02540-201ENST00000455554 ZNF316A6NFI3 1004 aaPredicted RBP8.36□□□□□ -1.07
LINC02540-201ENST00000455554 ANKRD13DQ6ZTN6 518 aa8.36□□□□□ -1.07
LINC02540-201ENST00000455554 C2orf72A6NCS6 295 aa8.35□□□□□ -1.07
LINC02540-201ENST00000455554 NLRP6P59044 892 aa8.35□□□□□ -1.07
LINC02540-201ENST00000455554 TAOK2Q9UL54 1235 aa8.35□□□□□ -1.07
LINC02540-201ENST00000455554 STK24Q9Y6E0 443 aa8.35□□□□□ -1.07
LINC02540-201ENST00000455554 NUDT7P0C024 238 aa8.33□□□□□ -1.08
LINC02540-201ENST00000455554 AXIN2Q9Y2T1 843 aa8.32□□□□□ -1.08
LINC02540-201ENST00000455554 LSM11P83369 360 aaKnown RBP eCLIP8.3□□□□□ -1.08
LINC02540-201ENST00000455554 LHX6Q9UPM6 363 aa8.3□□□□□ -1.08
LINC02540-201ENST00000455554 STK25O00506 426 aa8.29□□□□□ -1.08
LINC02540-201ENST00000455554 PPP1R37O75864 691 aa8.29□□□□□ -1.08
LINC02540-201ENST00000455554 RGL2O15211 777 aa8.28□□□□□ -1.08
LINC02540-201ENST00000455554 PCDHGA4Q9Y5G9 962 aa8.27□□□□□ -1.09
LINC02540-201ENST00000455554 PTGER2P43116 358 aa8.26□□□□□ -1.09
LINC02540-201ENST00000455554 ECM2O94769 699 aaPredicted RBP8.25□□□□□ -1.09
LINC02540-201ENST00000455554 PKD2Q13563 968 aa8.25□□□□□ -1.09
LINC02540-201ENST00000455554 KDM4FA0A1W2PPD8 638 aa8.21□□□□□ -1.1
LINC02540-201ENST00000455554 SLC34A2O95436 690 aa8.21□□□□□ -1.1
LINC02540-201ENST00000455554 DMRTA1Q5VZB9 504 aa8.19□□□□□ -1.1
LINC02540-201ENST00000455554 TMC2Q8TDI7 906 aa8.18□□□□□ -1.1
LINC02540-201ENST00000455554 PBX2P40425 430 aa8.17□□□□□ -1.1
LINC02540-201ENST00000455554 PSEN2P49810 448 aa8.17□□□□□ -1.1
LINC02540-201ENST00000455554 ADGRD1Q6QNK2 874 aa8.16□□□□□ -1.1
LINC02540-201ENST00000455554 ARHGAP33O14559 1287 aa8.13□□□□□ -1.11
LINC02540-201ENST00000455554 HRO43593 1189 aa8.13□□□□□ -1.11
LINC02540-201ENST00000455554 PLA2G2EQ9NZK7 142 aa8.13□□□□□ -1.11
LINC02540-201ENST00000455554 PTCD2Q8WV60 388 aaKnown RBP8.12□□□□□ -1.11
LINC02540-201ENST00000455554 DSG2Q14126 1118 aa8.11□□□□□ -1.11
LINC02540-201ENST00000455554 PLPP6Q8IY26 295 aa8.11□□□□□ -1.11
LINC02540-201ENST00000455554 PSDA5PKW4 1024 aaPredicted RBP8.09□□□□□ -1.11
LINC02540-201ENST00000455554 FOXK1P85037 733 aa8.09□□□□□ -1.11
LINC02540-201ENST00000455554 HCSTQ9UBK5 93 aa8.07□□□□□ -1.12
LINC02540-201ENST00000455554 GPHNQ9NQX3 736 aaPredicted RBP8.06□□□□□ -1.12
LINC02540-201ENST00000455554 KCTD12Q96CX2 325 aaKnown RBP8.05□□□□□ -1.12
LINC02540-201ENST00000455554 TK2O00142 265 aa8.04□□□□□ -1.12
LINC02540-201ENST00000455554 NKX1-1Q15270 411 aaPredicted RBP8.04□□□□□ -1.12
LINC02540-201ENST00000455554 KCNK17Q96T54 332 aa8.04□□□□□ -1.12
LINC02540-201ENST00000455554 HS6ST3Q8IZP7 471 aa8.02□□□□□ -1.13
LINC02540-201ENST00000455554 PPP4R3BQ5MIZ7 849 aa8.01□□□□□ -1.13
LINC02540-201ENST00000455554 UPF1Q92900 1129 aaKnown RBP eCLIP8.01□□□□□ -1.13
LINC02540-201ENST00000455554 TBC1D12O60347 775 aa8□□□□□ -1.13
LINC02540-201ENST00000455554 OXER1Q8TDS5 423 aa8□□□□□ -1.13
LINC02540-201ENST00000455554 VPS9D1Q9Y2B5 631 aa8□□□□□ -1.13
LINC02540-201ENST00000455554 PTPN5P54829 565 aa7.97□□□□□ -1.13
LINC02540-201ENST00000455554 ZNF454Q8N9F8 522 aa7.97□□□□□ -1.13
LINC02540-201ENST00000455554 CHGAP10645 457 aaKnown RBP7.96□□□□□ -1.14
LINC02540-201ENST00000455554 NCKAP5LQ9HCH0 1330 aa7.96□□□□□ -1.14
LINC02540-201ENST00000455554 KCNH8Q96L42 1107 aa7.95□□□□□ -1.14
LINC02540-201ENST00000455554 CRISPLD2Q9H0B8 497 aa7.95□□□□□ -1.14
LINC02540-201ENST00000455554 BHMG1C9JSJ3 638 aaPredicted RBP7.94□□□□□ -1.14
LINC02540-201ENST00000455554 STAC3Q96MF2 364 aa7.94□□□□□ -1.14
LINC02540-201ENST00000455554 FOSBP53539 338 aa7.93□□□□□ -1.14
LINC02540-201ENST00000455554 BCL2L12Q9HB09 334 aa7.93□□□□□ -1.14
LINC02540-201ENST00000455554 PPP1R15BQ5SWA1 713 aa7.92□□□□□ -1.14
LINC02540-201ENST00000455554 ZBED2Q9BTP6 218 aa7.91□□□□□ -1.14
LINC02540-201ENST00000455554 RYDENQ9NUL5 291 aaKnown RBP7.91□□□□□ -1.14
LINC02540-201ENST00000455554 THSD4Q6ZMP0 1018 aa7.9□□□□□ -1.14
LINC02540-201ENST00000455554 ADAM33Q9BZ11 813 aa7.9□□□□□ -1.14
LINC02540-201ENST00000455554 DNAJC5Q9H3Z4 198 aa7.9□□□□□ -1.14
LINC02540-201ENST00000455554 SLC4A5Q9BY07 1137 aa7.88□□□□□ -1.15
LINC02540-201ENST00000455554 ANO8Q9HCE9 1232 aaPredicted RBP7.88□□□□□ -1.15
LINC02540-201ENST00000455554 EVI5O60447 810 aa7.86□□□□□ -1.15
LINC02540-201ENST00000455554 PTPREP23469 700 aa7.85□□□□□ -1.15
LINC02540-201ENST00000455554 WNT2BQ93097 391 aa7.85□□□□□ -1.15
LINC02540-201ENST00000455554 JPH4Q96JJ6 628 aa7.85□□□□□ -1.15
LINC02540-201ENST00000455554 EMILIN3Q9NT22 766 aa7.85□□□□□ -1.15
LINC02540-201ENST00000455554 PROX2Q3B8N5 592 aa7.84□□□□□ -1.15
LINC02540-201ENST00000455554 A0A0G2JS52 829 aa7.83□□□□□ -1.16
LINC02540-201ENST00000455554 GTPBP6O43824 516 aaPredicted RBP7.83□□□□□ -1.16
LINC02540-201ENST00000455554 COL9A1P20849 921 aa7.83□□□□□ -1.16
LINC02540-201ENST00000455554 PDE4AP27815 886 aa7.83□□□□□ -1.16
LINC02540-201ENST00000455554 ZDHHC16Q969W1 377 aa7.83□□□□□ -1.16
LINC02540-201ENST00000455554 MRPL50Q8N5N7 158 aaKnown RBP7.82□□□□□ -1.16
LINC02540-201ENST00000455554 LARP6Q9BRS8 491 aaKnown RBP7.82□□□□□ -1.16
LINC02540-201ENST00000455554 IFFO2Q5TF58 517 aa7.81□□□□□ -1.16
LINC02540-201ENST00000455554 CADPS2Q86UW7 1296 aa7.81□□□□□ -1.16
LINC02540-201ENST00000455554 PCDHGA10Q9Y5H3 936 aa7.81□□□□□ -1.16
LINC02540-201ENST00000455554 GOLGA8CPA6NN73 597 aa7.8□□□□□ -1.16
LINC02540-201ENST00000455554 BCAMP50895 628 aa7.78□□□□□ -1.16
LINC02540-201ENST00000455554 MFSD10Q14728 455 aa7.78□□□□□ -1.16
LINC02540-201ENST00000455554 DDX27Q96GQ7 796 aaKnown RBP7.78□□□□□ -1.16
LINC02540-201ENST00000455554 IRX2Q9BZI1 471 aaPredicted RBP7.77□□□□□ -1.17
LINC02540-201ENST00000455554 NBPF3Q9H094 633 aa7.77□□□□□ -1.17
LINC02540-201ENST00000455554 PPP1R3GB7ZBB8 358 aa7.76□□□□□ -1.17
LINC02540-201ENST00000455554 RGS20O76081 388 aa7.76□□□□□ -1.17
LINC02540-201ENST00000455554 MAP3K9P80192 1104 aa7.76□□□□□ -1.17
LINC02540-201ENST00000455554 RABGEF1Q9UJ41 708 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms