RNA–Protein interactions for RNA: ENST00000452483.1

HMGB3P21-201, Transcript of high mobility group box 3 pseudogene 21, humanhuman

BASIC

Gene HMGB3P21, Length 547 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P21-201ENST00000452483 LCE2DQ5TA82 110 aaPredicted RBP8.07□□□□□ -1.12
HMGB3P21-201ENST00000452483 C3orf67Q6ZVT6 689 aa8.07□□□□□ -1.12
HMGB3P21-201ENST00000452483 RANGAP1P46060 587 aaPredicted RBP8.05□□□□□ -1.12
HMGB3P21-201ENST00000452483 MICALL2Q8IY33 904 aa8.05□□□□□ -1.12
HMGB3P21-201ENST00000452483 VSIG10Q8N0Z9 540 aa8.04□□□□□ -1.12
HMGB3P21-201ENST00000452483 TMEM121BQ9BXQ6 578 aaPredicted RBP8.04□□□□□ -1.12
HMGB3P21-201ENST00000452483 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.04□□□□□ -1.12
HMGB3P21-201ENST00000452483 ERICH6Q7L0X2 663 aa8.03□□□□□ -1.12
HMGB3P21-201ENST00000452483 RYDENQ9NUL5 291 aaKnown RBP8.03□□□□□ -1.12
HMGB3P21-201ENST00000452483 SLAIN1Q8ND83 568 aa8.01□□□□□ -1.13
HMGB3P21-201ENST00000452483 FAM163AQ96GL9 167 aaPredicted RBP8.01□□□□□ -1.13
HMGB3P21-201ENST00000452483 GTF3C3Q9Y5Q9 886 aa8.01□□□□□ -1.13
HMGB3P21-201ENST00000452483 PPP1R37O75864 691 aa8□□□□□ -1.13
HMGB3P21-201ENST00000452483 CDAN1Q8IWY9 1227 aa8□□□□□ -1.13
HMGB3P21-201ENST00000452483 BBXQ8WY36 941 aaPredicted RBP8□□□□□ -1.13
HMGB3P21-201ENST00000452483 GTPBP6O43824 516 aaPredicted RBP7.98□□□□□ -1.13
HMGB3P21-201ENST00000452483 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.95□□□□□ -1.14
HMGB3P21-201ENST00000452483 TMEM92Q6UXU6 159 aa7.94□□□□□ -1.14
HMGB3P21-201ENST00000452483 MMRN1Q13201 1228 aa7.92□□□□□ -1.14
HMGB3P21-201ENST00000452483 SPRYD3Q8NCJ5 442 aa7.89□□□□□ -1.15
HMGB3P21-201ENST00000452483 C2orf72A6NCS6 295 aa7.88□□□□□ -1.15
HMGB3P21-201ENST00000452483 KIF3CO14782 793 aa7.88□□□□□ -1.15
HMGB3P21-201ENST00000452483 SNPHO15079 494 aa7.88□□□□□ -1.15
HMGB3P21-201ENST00000452483 PAXIP1Q6ZW49 1069 aaPredicted RBP7.88□□□□□ -1.15
HMGB3P21-201ENST00000452483 TMC2Q8TDI7 906 aa7.88□□□□□ -1.15
HMGB3P21-201ENST00000452483 CFAP44Q96MT7 982 aa7.87□□□□□ -1.15
HMGB3P21-201ENST00000452483 HOXB3P14651 431 aaPredicted RBP7.84□□□□□ -1.15
HMGB3P21-201ENST00000452483 DOK7Q18PE1 504 aa7.83□□□□□ -1.16
HMGB3P21-201ENST00000452483 CRISPLD2Q9H0B8 497 aa7.83□□□□□ -1.16
HMGB3P21-201ENST00000452483 GPHNQ9NQX3 736 aaPredicted RBP7.83□□□□□ -1.16
HMGB3P21-201ENST00000452483 ST18O60284 1047 aa7.82□□□□□ -1.16
HMGB3P21-201ENST00000452483 C14orf37Q86TY3 774 aa7.82□□□□□ -1.16
HMGB3P21-201ENST00000452483 SPNS2Q8IVW8 549 aa7.82□□□□□ -1.16
HMGB3P21-201ENST00000452483 PODXL2Q9NZ53 605 aa7.82□□□□□ -1.16
HMGB3P21-201ENST00000452483 KDM2AQ9Y2K7 1162 aa7.82□□□□□ -1.16
HMGB3P21-201ENST00000452483 NCKAP5LQ9HCH0 1330 aa7.81□□□□□ -1.16
HMGB3P21-201ENST00000452483 TMEM132AQ24JP5 1023 aa7.81□□□□□ -1.16
HMGB3P21-201ENST00000452483 CADPS2Q86UW7 1296 aa7.81□□□□□ -1.16
HMGB3P21-201ENST00000452483 FOXK1P85037 733 aa7.8□□□□□ -1.16
HMGB3P21-201ENST00000452483 ZNF710Q8N1W2 664 aa7.8□□□□□ -1.16
HMGB3P21-201ENST00000452483 RIMBP2O15034 1052 aa7.79□□□□□ -1.16
HMGB3P21-201ENST00000452483 DSG2Q14126 1118 aa7.79□□□□□ -1.16
HMGB3P21-201ENST00000452483 PDE4AP27815 886 aa7.78□□□□□ -1.16
HMGB3P21-201ENST00000452483 PLPP6Q8IY26 295 aa7.78□□□□□ -1.16
HMGB3P21-201ENST00000452483 PPP1R15BQ5SWA1 713 aa7.77□□□□□ -1.17
HMGB3P21-201ENST00000452483 MFSD10Q14728 455 aa7.76□□□□□ -1.17
HMGB3P21-201ENST00000452483 DDX27Q96GQ7 796 aaKnown RBP7.76□□□□□ -1.17
HMGB3P21-201ENST00000452483 LARP6Q9BRS8 491 aaKnown RBP7.76□□□□□ -1.17
HMGB3P21-201ENST00000452483 ZSWIM6Q9HCJ5 1215 aa7.76□□□□□ -1.17
HMGB3P21-201ENST00000452483 SLC34A2O95436 690 aa7.75□□□□□ -1.17
HMGB3P21-201ENST00000452483 HOXB1P14653 301 aaPredicted RBP7.74□□□□□ -1.17
HMGB3P21-201ENST00000452483 MARVELD3Q96A59 401 aa7.74□□□□□ -1.17
HMGB3P21-201ENST00000452483 EMP3P54852 163 aa7.73□□□□□ -1.17
HMGB3P21-201ENST00000452483 GPR153Q6NV75 609 aa7.72□□□□□ -1.17
HMGB3P21-201ENST00000452483 ARSIQ5FYB1 569 aa7.71□□□□□ -1.18
HMGB3P21-201ENST00000452483 TSHZ2Q9NRE2 1034 aa7.71□□□□□ -1.18
HMGB3P21-201ENST00000452483 PCDHGA4Q9Y5G9 962 aa7.71□□□□□ -1.18
HMGB3P21-201ENST00000452483 PTCD2Q8WV60 388 aaKnown RBP7.7□□□□□ -1.18
HMGB3P21-201ENST00000452483 KHSRPQ92945 711 aaKnown RBP eCLIP7.7□□□□□ -1.18
HMGB3P21-201ENST00000452483 UPF1Q92900 1129 aaKnown RBP eCLIP7.69□□□□□ -1.18
HMGB3P21-201ENST00000452483 NUDT7P0C024 238 aa7.68□□□□□ -1.18
HMGB3P21-201ENST00000452483 NBR1Q14596 966 aa7.68□□□□□ -1.18
HMGB3P21-201ENST00000452483 OXER1Q8TDS5 423 aa7.67□□□□□ -1.18
HMGB3P21-201ENST00000452483 FAM205CA6NFA0 338 aa7.66□□□□□ -1.18
HMGB3P21-201ENST00000452483 TTBK1Q5TCY1 1321 aaPredicted RBP7.66□□□□□ -1.18
HMGB3P21-201ENST00000452483 TBC1D12O60347 775 aa7.65□□□□□ -1.18
HMGB3P21-201ENST00000452483 ERBB3P21860 1342 aa7.65□□□□□ -1.18
HMGB3P21-201ENST00000452483 CAMK2BQ13554 666 aa7.65□□□□□ -1.18
HMGB3P21-201ENST00000452483 HS3ST6Q96QI5 342 aa7.65□□□□□ -1.18
HMGB3P21-201ENST00000452483 EMILIN3Q9NT22 766 aa7.65□□□□□ -1.18
HMGB3P21-201ENST00000452483 NPM2Q86SE8 214 aaKnown RBP7.64□□□□□ -1.19
HMGB3P21-201ENST00000452483 WDR70Q9NW82 654 aa7.64□□□□□ -1.19
HMGB3P21-201ENST00000452483 VARS2Q5ST30 1063 aaKnown RBP7.63□□□□□ -1.19
HMGB3P21-201ENST00000452483 KDM4FA0A1W2PPD8 638 aa7.62□□□□□ -1.19
HMGB3P21-201ENST00000452483 POTEB3A0JP26 581 aa7.62□□□□□ -1.19
HMGB3P21-201ENST00000452483 ZNF316A6NFI3 1004 aaPredicted RBP7.62□□□□□ -1.19
HMGB3P21-201ENST00000452483 POTEBQ6S5H4 581 aa7.62□□□□□ -1.19
HMGB3P21-201ENST00000452483 LHX6Q9UPM6 363 aa7.62□□□□□ -1.19
HMGB3P21-201ENST00000452483 MYT1Q01538 1121 aa7.61□□□□□ -1.19
HMGB3P21-201ENST00000452483 MAP3K9P80192 1104 aa7.6□□□□□ -1.19
HMGB3P21-201ENST00000452483 E2F4Q16254 413 aa7.6□□□□□ -1.19
HMGB3P21-201ENST00000452483 SUPT5HO00267 1087 aaKnown RBP7.59□□□□□ -1.19
HMGB3P21-201ENST00000452483 DPYSL4O14531 572 aa7.59□□□□□ -1.19
HMGB3P21-201ENST00000452483 EVI5O60447 810 aa7.58□□□□□ -1.2
HMGB3P21-201ENST00000452483 PSDA5PKW4 1024 aaPredicted RBP7.57□□□□□ -1.2
HMGB3P21-201ENST00000452483 ZNF687Q8N1G0 1237 aa7.55□□□□□ -1.2
HMGB3P21-201ENST00000452483 KCNV2Q8TDN2 545 aa7.55□□□□□ -1.2
HMGB3P21-201ENST00000452483 PDIA6Q15084 440 aa7.54□□□□□ -1.2
HMGB3P21-201ENST00000452483 PPP4R3BQ5MIZ7 849 aa7.54□□□□□ -1.2
HMGB3P21-201ENST00000452483 KRTAP3-3Q9BYR6 98 aa7.54□□□□□ -1.2
HMGB3P21-201ENST00000452483 KRTAP3-2Q9BYR7 98 aa7.54□□□□□ -1.2
HMGB3P21-201ENST00000452483 ANO8Q9HCE9 1232 aaPredicted RBP7.54□□□□□ -1.2
HMGB3P21-201ENST00000452483 ARIH1Q9Y4X5 557 aaPredicted RBP7.54□□□□□ -1.2
HMGB3P21-201ENST00000452483 P3H3Q8IVL6 736 aa7.53□□□□□ -1.2
HMGB3P21-201ENST00000452483 ZNF454Q8N9F8 522 aa7.53□□□□□ -1.2
HMGB3P21-201ENST00000452483 JPH4Q96JJ6 628 aa7.53□□□□□ -1.2
HMGB3P21-201ENST00000452483 FOSBP53539 338 aa7.51□□□□□ -1.21
HMGB3P21-201ENST00000452483 SPDYE16A6NNV3 312 aaPredicted RBP7.5□□□□□ -1.21
HMGB3P21-201ENST00000452483 PBX2P40425 430 aa7.5□□□□□ -1.21
HMGB3P21-201ENST00000452483 TRIM26Q12899 539 aaPredicted RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms