RNA–Protein interactions for RNA: ENST00000448611.6

LMNA-208, Transcript of lamin A/C, humanhuman

TSL 2 BASIC

Gene LMNA, Length 1,943 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-208ENST00000448611 GCC2Q8IWJ2 1684 aa26■■□□□ 1.75
LMNA-208ENST00000448611 CFDP1Q9UEE9 299 aaPredicted RBP26■■□□□ 1.75
LMNA-208ENST00000448611 CAMSAP2Q08AD1 1489 aa25.99■■□□□ 1.75
LMNA-208ENST00000448611 ABCC5O15440 1437 aa25.99■■□□□ 1.75
LMNA-208ENST00000448611 CHIC2Q9UKJ5 165 aa25.98■■□□□ 1.75
LMNA-208ENST00000448611 CDC42BPAQ5VT25 1732 aa25.96■■□□□ 1.75
LMNA-208ENST00000448611 UHRF1BP1LA0JNW5 1464 aa25.95■■□□□ 1.75
LMNA-208ENST00000448611 RRP7BPQ9NSQ0 103 aa25.95■■□□□ 1.74
LMNA-208ENST00000448611 ROCK1Q13464 1354 aa25.94■■□□□ 1.74
LMNA-208ENST00000448611 KDM6BO15054 1643 aa25.87■■□□□ 1.73
LMNA-208ENST00000448611 KDM5BQ9UGL1 1544 aa25.87■■□□□ 1.73
LMNA-208ENST00000448611 ZNF316A6NFI3 1004 aaPredicted RBP25.86■■□□□ 1.73
LMNA-208ENST00000448611 ZNF777Q9ULD5 760 aaPredicted RBP25.86■■□□□ 1.73
LMNA-208ENST00000448611 ZCCHC11Q5TAX3 1644 aaKnown RBP25.85■■□□□ 1.73
LMNA-208ENST00000448611 CROCC2H7BZ55 1655 aa25.84■■□□□ 1.73
LMNA-208ENST00000448611 PREX2Q70Z35 1606 aa25.82■■□□□ 1.72
LMNA-208ENST00000448611 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.81■■□□□ 1.729e-7■■□□□ 11.4
LMNA-208ENST00000448611 NPM1P06748 294 aaKnown RBP eCLIP25.8■■□□□ 1.72
LMNA-208ENST00000448611 SIN3AQ96ST3 1273 aa25.8■■□□□ 1.72
LMNA-208ENST00000448611 ADGRL2O95490 1459 aa25.8■■□□□ 1.72
LMNA-208ENST00000448611 TTC37Q6PGP7 1564 aa25.8■■□□□ 1.72
LMNA-208ENST00000448611 ADGBQ8N7X0 1667 aa25.79■■□□□ 1.72
LMNA-208ENST00000448611 CDC42BPBQ9Y5S2 1711 aa25.79■■□□□ 1.72
LMNA-208ENST00000448611 NCOA1Q15788 1441 aa25.78■■□□□ 1.72
LMNA-208ENST00000448611 SHANK2Q9UPX8 1470 aa25.76■■□□□ 1.71
LMNA-208ENST00000448611 TIMELESSQ9UNS1 1208 aa25.75■■□□□ 1.71
LMNA-208ENST00000448611 ACIN1Q9UKV3 1341 aaKnown RBP25.75■■□□□ 1.71
LMNA-208ENST00000448611 SAMD9LQ8IVG5 1584 aa25.75■■□□□ 1.71
LMNA-208ENST00000448611 DENND4BO75064 1496 aaPredicted RBP25.74■■□□□ 1.71
LMNA-208ENST00000448611 ARHGEF5Q12774 1597 aa25.74■■□□□ 1.71
LMNA-208ENST00000448611 NEUROD1Q13562 356 aa25.73■■□□□ 1.71
LMNA-208ENST00000448611 MBD5Q9P267 1494 aa25.73■■□□□ 1.71
LMNA-208ENST00000448611 TRIM52Q96A61 297 aa25.71■■□□□ 1.71
LMNA-208ENST00000448611 DIEXFQ68CQ4 756 aaKnown RBP25.71■■□□□ 1.71
LMNA-208ENST00000448611 ANKRD30AQ9BXX3 1397 aa25.7■■□□□ 1.71
LMNA-208ENST00000448611 MYO5CQ9NQX4 1742 aa25.69■■□□□ 1.7
LMNA-208ENST00000448611 C9orf84Q5VXU9 1444 aa25.69■■□□□ 1.7
LMNA-208ENST00000448611 KCNH8Q96L42 1107 aa25.68■■□□□ 1.7
LMNA-208ENST00000448611 ARHGAP5Q13017 1502 aa25.68■■□□□ 1.7
LMNA-208ENST00000448611 HNRNPMP52272 730 aaKnown RBP eCLIP25.67■■□□□ 1.7
LMNA-208ENST00000448611 MPHOSPH9Q99550 1183 aa25.66■■□□□ 1.7
LMNA-208ENST00000448611 CCDC141Q6ZP82 1450 aa25.65■■□□□ 1.7
LMNA-208ENST00000448611 TSPY4P0CV99 314 aa25.63■■□□□ 1.69
LMNA-208ENST00000448611 TSPY10P0CW01 314 aa25.63■■□□□ 1.69
LMNA-208ENST00000448611 PLCH2O75038 1416 aa25.63■■□□□ 1.69
LMNA-208ENST00000448611 ASXL2Q76L83 1435 aa25.63■■□□□ 1.69
LMNA-208ENST00000448611 RSPH4AQ5TD94 716 aa25.63■■□□□ 1.69
LMNA-208ENST00000448611 SYCP2Q9BX26 1530 aa25.62■■□□□ 1.69
LMNA-208ENST00000448611 WDR7Q9Y4E6 1490 aa25.6■■□□□ 1.69
LMNA-208ENST00000448611 KIAA1107Q9UPP5 1409 aa25.6■■□□□ 1.69
LMNA-208ENST00000448611 PLEKHH2Q8IVE3 1493 aa25.6■■□□□ 1.69
LMNA-208ENST00000448611 ANKRD50Q9ULJ7 1429 aa25.6■■□□□ 1.69
LMNA-208ENST00000448611 TONSLQ96HA7 1378 aa25.57■■□□□ 1.68
LMNA-208ENST00000448611 PPP1R15AO75807 674 aaPredicted RBP25.57■■□□□ 1.68
LMNA-208ENST00000448611 MAST1Q9Y2H9 1570 aa25.56■■□□□ 1.68
LMNA-208ENST00000448611 PZPP20742 1482 aa25.56■■□□□ 1.68
LMNA-208ENST00000448611 ARAP3Q8WWN8 1544 aa25.54■■□□□ 1.68
LMNA-208ENST00000448611 KIF15Q9NS87 1388 aa25.54■■□□□ 1.68
LMNA-208ENST00000448611 ARHGEF12Q9NZN5 1544 aa25.53■■□□□ 1.68
LMNA-208ENST00000448611 EFCAB2Q5VUJ9 269 aa25.52■■□□□ 1.68
LMNA-208ENST00000448611 SLC4A1APQ9BWU0 796 aaKnown RBP25.51■■□□□ 1.67
LMNA-208ENST00000448611 ANKRD30BQ9BXX2 1392 aa25.51■■□□□ 1.67
LMNA-208ENST00000448611 ABCC1P33527 1531 aa25.5■■□□□ 1.67
LMNA-208ENST00000448611 FOXD1Q16676 465 aa25.49■■□□□ 1.67
LMNA-208ENST00000448611 ABCA9Q8IUA7 1624 aa25.49■■□□□ 1.67
LMNA-208ENST00000448611 KDM5DQ9BY66 1539 aa25.46■■□□□ 1.67
LMNA-208ENST00000448611 PLXNC1O60486 1568 aa25.45■■□□□ 1.67
LMNA-208ENST00000448611 RPRD2Q5VT52 1461 aaKnown RBP25.42■■□□□ 1.66
LMNA-208ENST00000448611 FAM69CQ0P6D2 419 aa25.41■■□□□ 1.66
LMNA-208ENST00000448611 NUP155O75694 1391 aa25.4■■□□□ 1.66
LMNA-208ENST00000448611 TRAPPC8Q9Y2L5 1435 aa25.39■■□□□ 1.66
LMNA-208ENST00000448611 DIP2BQ9P265 1576 aa25.39■■□□□ 1.65
LMNA-208ENST00000448611 FANCAO15360 1455 aa25.37■■□□□ 1.65
LMNA-208ENST00000448611 TRHP20396 242 aaPredicted RBP25.35■■□□□ 1.65
LMNA-208ENST00000448611 PKD2Q13563 968 aa25.35■■□□□ 1.65
LMNA-208ENST00000448611 DUOX2Q9NRD8 1548 aa25.35■■□□□ 1.65
LMNA-208ENST00000448611 UNC13BO14795 1591 aa25.32■■□□□ 1.64
LMNA-208ENST00000448611 TEX14Q8IWB6 1497 aa25.32■■□□□ 1.64
LMNA-208ENST00000448611 GLI2P10070 1586 aa25.32■■□□□ 1.64
LMNA-208ENST00000448611 L3MBTL2Q969R5 705 aa25.31■■□□□ 1.64
LMNA-208ENST00000448611 KIF13AQ9H1H9 1805 aa25.31■■□□□ 1.64
LMNA-208ENST00000448611 RTEL1-TNFRSF6BF6WH68 1400 aa25.3■■□□□ 1.64
LMNA-208ENST00000448611 CD109Q6YHK3 1445 aa25.3■■□□□ 1.64
LMNA-208ENST00000448611 ERBINQ96RT1 1412 aa25.3■■□□□ 1.64
LMNA-208ENST00000448611 FAM135AQ9P2D6 1515 aa25.3■■□□□ 1.64
LMNA-208ENST00000448611 ZFYVE16Q7Z3T8 1539 aa25.28■■□□□ 1.64
LMNA-208ENST00000448611 AFAP1Q8N556 730 aa25.27■■□□□ 1.64
LMNA-208ENST00000448611 SPAG9O60271 1321 aaKnown RBP25.27■■□□□ 1.64
LMNA-208ENST00000448611 MIER1Q8N108 512 aa25.27■■□□□ 1.64
LMNA-208ENST00000448611 MAP3K4Q9Y6R4 1608 aa25.27■■□□□ 1.64
LMNA-208ENST00000448611 ADGRL1O94910 1474 aa25.27■■□□□ 1.64
LMNA-208ENST00000448611 MAGI2Q86UL8 1455 aa25.24■■□□□ 1.63
LMNA-208ENST00000448611 SCAPERQ9BY12 1400 aa25.24■■□□□ 1.63
LMNA-208ENST00000448611 INO80Q9ULG1 1556 aaPredicted RBP25.23■■□□□ 1.63
LMNA-208ENST00000448611 TSPOAP1O95153 1857 aa25.22■■□□□ 1.63
LMNA-208ENST00000448611 IQGAP3Q86VI3 1631 aa25.21■■□□□ 1.63
LMNA-208ENST00000448611 ATP7AQ04656 1500 aa25.2■■□□□ 1.62
LMNA-208ENST00000448611 CFAP74Q9C0B2 1584 aa25.17■■□□□ 1.62
LMNA-208ENST00000448611 HIRIP3Q9BW71 556 aaPredicted RBP25.16■■□□□ 1.62
LMNA-208ENST00000448611 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.15■■□□□ 1.622e-8■■■□□ 16.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms