RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 NCOA2Q15596 1464 aa17.64■□□□□ 0.41
PTCH1-207ENST00000429896 SIN3AQ96ST3 1273 aa17.64■□□□□ 0.41
PTCH1-207ENST00000429896 MPHOSPH9Q99550 1183 aa17.64■□□□□ 0.41
PTCH1-207ENST00000429896 CARD11Q9BXL7 1154 aa17.64■□□□□ 0.41
PTCH1-207ENST00000429896 DCAF11Q8TEB1 546 aa17.63■□□□□ 0.41
PTCH1-207ENST00000429896 RAB3GAP2Q9H2M9 1393 aa17.62■□□□□ 0.41
PTCH1-207ENST00000429896 TROQ12816 1431 aaPredicted RBP17.62■□□□□ 0.41
PTCH1-207ENST00000429896 ADAMTS12P58397 1594 aa17.61■□□□□ 0.41
PTCH1-207ENST00000429896 ZNF644Q9H582 1327 aaPredicted RBP17.61■□□□□ 0.41
PTCH1-207ENST00000429896 FOXD1Q16676 465 aa17.6■□□□□ 0.41
PTCH1-207ENST00000429896 FGD6Q6ZV73 1430 aa17.6■□□□□ 0.41
PTCH1-207ENST00000429896 EHBP1L1Q8N3D4 1523 aa17.6■□□□□ 0.41
PTCH1-207ENST00000429896 TMC1Q8TDI8 760 aa17.59■□□□□ 0.41
PTCH1-207ENST00000429896 CDCA8Q53HL2 280 aa17.59■□□□□ 0.41
PTCH1-207ENST00000429896 EID1Q9Y6B2 187 aa17.59■□□□□ 0.41
PTCH1-207ENST00000429896 PLB1Q6P1J6 1458 aa17.59■□□□□ 0.41
PTCH1-207ENST00000429896 PLEKHH2Q8IVE3 1493 aa17.56■□□□□ 0.4
PTCH1-207ENST00000429896 EPRSP07814 1512 aaKnown RBP17.56■□□□□ 0.4
PTCH1-207ENST00000429896 PHLDB1Q86UU1 1377 aa17.55■□□□□ 0.4
PTCH1-207ENST00000429896 AEBP2Q6ZN18 517 aaPredicted RBP17.54■□□□□ 0.4
PTCH1-207ENST00000429896 AFAP1Q8N556 730 aa17.54■□□□□ 0.4
PTCH1-207ENST00000429896 CDK13Q14004 1512 aaKnown RBP17.54■□□□□ 0.4
PTCH1-207ENST00000429896 HAP1P54257 671 aaPredicted RBP17.54■□□□□ 0.4
PTCH1-207ENST00000429896 PLEKHG5O94827 1062 aa17.53■□□□□ 0.4
PTCH1-207ENST00000429896 DDX10Q13206 875 aaKnown RBP17.53■□□□□ 0.4
PTCH1-207ENST00000429896 ZBTB7CA1YPR0 619 aa17.53■□□□□ 0.4
PTCH1-207ENST00000429896 WDR97A6NE52 1622 aa17.52■□□□□ 0.4
PTCH1-207ENST00000429896 KIF15Q9NS87 1388 aa17.52■□□□□ 0.4
PTCH1-207ENST00000429896 HIRIP3Q9BW71 556 aaPredicted RBP17.52■□□□□ 0.39
PTCH1-207ENST00000429896 CD109Q6YHK3 1445 aa17.51■□□□□ 0.39
PTCH1-207ENST00000429896 TIMELESSQ9UNS1 1208 aa17.49■□□□□ 0.39
PTCH1-207ENST00000429896 PBRM1Q86U86 1689 aa17.47■□□□□ 0.39
PTCH1-207ENST00000429896 STK26Q9P289 416 aa17.47■□□□□ 0.39
PTCH1-207ENST00000429896 SCAPERQ9BY12 1400 aa17.47■□□□□ 0.39
PTCH1-207ENST00000429896 TIAM1Q13009 1591 aa17.46■□□□□ 0.39
PTCH1-207ENST00000429896 PCF11O94913 1555 aaKnown RBP17.46■□□□□ 0.39
PTCH1-207ENST00000429896 ZBTB47Q9UFB7 747 aaPredicted RBP17.46■□□□□ 0.39
PTCH1-207ENST00000429896 MIA2Q96PC5 1412 aa17.45■□□□□ 0.38
PTCH1-207ENST00000429896 RAPGEF3O95398 923 aa17.45■□□□□ 0.38
PTCH1-207ENST00000429896 NUTM2DQ5VT03 806 aaPredicted RBP17.44■□□□□ 0.38
PTCH1-207ENST00000429896 ABCA5Q8WWZ7 1642 aa17.44■□□□□ 0.38
PTCH1-207ENST00000429896 LMOD2Q6P5Q4 547 aa17.44■□□□□ 0.38
PTCH1-207ENST00000429896 NUP160Q12769 1436 aa17.44■□□□□ 0.38
PTCH1-207ENST00000429896 CANXP27824 592 aaKnown RBP17.43■□□□□ 0.38
PTCH1-207ENST00000429896 CCDC144AA2RUR9 1427 aa17.43■□□□□ 0.38
PTCH1-207ENST00000429896 SAFB2Q14151 953 aaKnown RBP eCLIP17.43■□□□□ 0.38
PTCH1-207ENST00000429896 KIF14Q15058 1648 aa17.42■□□□□ 0.38
PTCH1-207ENST00000429896 THOC2Q8NI27 1593 aaKnown RBP17.42■□□□□ 0.38
PTCH1-207ENST00000429896 ARHGEF11O15085 1522 aa17.42■□□□□ 0.38
PTCH1-207ENST00000429896 SUPT6HQ7KZ85 1726 aaKnown RBP17.41■□□□□ 0.38
PTCH1-207ENST00000429896 ANKRD50Q9ULJ7 1429 aa17.41■□□□□ 0.38
PTCH1-207ENST00000429896 SRPK2P78362 688 aaKnown RBP17.4■□□□□ 0.38
PTCH1-207ENST00000429896 TMF1P82094 1093 aa17.4■□□□□ 0.38
PTCH1-207ENST00000429896 KNSTRNQ9Y448 316 aa17.4■□□□□ 0.38
PTCH1-207ENST00000429896 TARBP1Q13395 1621 aaKnown RBP17.4■□□□□ 0.38
PTCH1-207ENST00000429896 UGGT2Q9NYU1 1516 aa17.4■□□□□ 0.38
PTCH1-207ENST00000429896 POGZQ7Z3K3 1410 aa17.39■□□□□ 0.37
PTCH1-207ENST00000429896 C9orf84Q5VXU9 1444 aa17.39■□□□□ 0.37
PTCH1-207ENST00000429896 WDR43Q15061 677 aaKnown RBP eCLIP17.39■□□□□ 0.37
PTCH1-207ENST00000429896 ROCK2O75116 1388 aaKnown RBP17.38■□□□□ 0.37
PTCH1-207ENST00000429896 CTTNBP2Q8WZ74 1663 aa17.37■□□□□ 0.37
PTCH1-207ENST00000429896 KIAA0556O60303 1618 aa17.37■□□□□ 0.37
PTCH1-207ENST00000429896 ASXL2Q76L83 1435 aa17.36■□□□□ 0.37
PTCH1-207ENST00000429896 RAPGEF6Q8TEU7 1601 aa17.36■□□□□ 0.37
PTCH1-207ENST00000429896 GTF3C3Q9Y5Q9 886 aa17.35■□□□□ 0.37
PTCH1-207ENST00000429896 ADGRL1O94910 1474 aa17.35■□□□□ 0.37
PTCH1-207ENST00000429896 VGFO15240 615 aaPredicted RBP17.35■□□□□ 0.37
PTCH1-207ENST00000429896 EIF3AQ14152 1382 aaKnown RBP17.34■□□□□ 0.37
PTCH1-207ENST00000429896 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.32■□□□□ 0.36
PTCH1-207ENST00000429896 FAM9BQ8IZU0 186 aa17.31■□□□□ 0.36
PTCH1-207ENST00000429896 CFAP53Q96M91 514 aa17.31■□□□□ 0.36
PTCH1-207ENST00000429896 NPM2Q86SE8 214 aaKnown RBP17.31■□□□□ 0.36
PTCH1-207ENST00000429896 A0A0G2JS52 829 aa17.31■□□□□ 0.36
PTCH1-207ENST00000429896 RRBP1Q9P2E9 1410 aaKnown RBP17.3■□□□□ 0.36
PTCH1-207ENST00000429896 DAPK1P53355 1430 aa17.3■□□□□ 0.36
PTCH1-207ENST00000429896 L3MBTL2Q969R5 705 aa17.3■□□□□ 0.36
PTCH1-207ENST00000429896 ATP10BO94823 1461 aa17.3■□□□□ 0.36
PTCH1-207ENST00000429896 TEX14Q8IWB6 1497 aa17.3■□□□□ 0.36
PTCH1-207ENST00000429896 WDR7Q9Y4E6 1490 aa17.29■□□□□ 0.36
PTCH1-207ENST00000429896 PPM1GO15355 546 aaPredicted RBP17.29■□□□□ 0.36
PTCH1-207ENST00000429896 FANCAO15360 1455 aa17.29■□□□□ 0.36
PTCH1-207ENST00000429896 CEP170Q5SW79 1584 aa17.29■□□□□ 0.36
PTCH1-207ENST00000429896 CCDC141Q6ZP82 1450 aa17.29■□□□□ 0.36
PTCH1-207ENST00000429896 DENND4BO75064 1496 aaPredicted RBP17.28■□□□□ 0.36
PTCH1-207ENST00000429896 MRS2Q9HD23 443 aa17.28■□□□□ 0.36
PTCH1-207ENST00000429896 CAMSAP2Q08AD1 1489 aa17.27■□□□□ 0.36
PTCH1-207ENST00000429896 HDGFL2Q7Z4V5 671 aaPredicted RBP17.27■□□□□ 0.35
PTCH1-207ENST00000429896 MAP3K1Q13233 1512 aa17.26■□□□□ 0.35
PTCH1-207ENST00000429896 NUP153P49790 1475 aaKnown RBP17.26■□□□□ 0.35
PTCH1-207ENST00000429896 ABCC2Q92887 1545 aa17.25■□□□□ 0.35
PTCH1-207ENST00000429896 HSPA5P11021 654 aaKnown RBP17.25■□□□□ 0.35
PTCH1-207ENST00000429896 AKNAQ7Z591 1439 aa17.24■□□□□ 0.35
PTCH1-207ENST00000429896 DHX57Q6P158 1386 aaKnown RBP17.22■□□□□ 0.35
PTCH1-207ENST00000429896 DISP1Q96F81 1524 aa17.22■□□□□ 0.35
PTCH1-207ENST00000429896 PAK3O75914 559 aaPredicted RBP17.22■□□□□ 0.35
PTCH1-207ENST00000429896 TRAK1Q9UPV9 953 aa17.21■□□□□ 0.35
PTCH1-207ENST00000429896 SALL2Q9Y467 1007 aaPredicted RBP17.2■□□□□ 0.34
PTCH1-207ENST00000429896 PLCH2O75038 1416 aa17.19■□□□□ 0.34
PTCH1-207ENST00000429896 TNNT2P45379 298 aaPredicted RBP17.19■□□□□ 0.34
PTCH1-207ENST00000429896 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms