RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 CCER2I3L3R5 266 aa20.21■□□□□ 0.83
LIG1-202ENST00000427526 PTPRGP23470 1445 aa20.21■□□□□ 0.83
LIG1-202ENST00000427526 ABCA8O94911 1581 aa20.2■□□□□ 0.82
LIG1-202ENST00000427526 ATP10BO94823 1461 aa20.18■□□□□ 0.82
LIG1-202ENST00000427526 PLEKHD1A6NEE1 506 aa20.18■□□□□ 0.82
LIG1-202ENST00000427526 GCC2Q8IWJ2 1684 aa20.17■□□□□ 0.82
LIG1-202ENST00000427526 AKNAQ7Z591 1439 aa20.16■□□□□ 0.82
LIG1-202ENST00000427526 CFDP1Q9UEE9 299 aaPredicted RBP20.16■□□□□ 0.82
LIG1-202ENST00000427526 DENND4BO75064 1496 aaPredicted RBP20.16■□□□□ 0.82
LIG1-202ENST00000427526 ANP32CO43423 234 aa20.15■□□□□ 0.82
LIG1-202ENST00000427526 BCL11AQ9H165 835 aa20.15■□□□□ 0.82
LIG1-202ENST00000427526 KIF14Q15058 1648 aa20.14■□□□□ 0.81
LIG1-202ENST00000427526 ZNF777Q9ULD5 760 aaPredicted RBP20.13■□□□□ 0.81
LIG1-202ENST00000427526 GPATCH8Q9UKJ3 1502 aaKnown RBP20.13■□□□□ 0.81
LIG1-202ENST00000427526 ABCC5O15440 1437 aa20.12■□□□□ 0.81
LIG1-202ENST00000427526 DAPK1P53355 1430 aa20.12■□□□□ 0.81
LIG1-202ENST00000427526 KDM6BO15054 1643 aa20.1■□□□□ 0.81
LIG1-202ENST00000427526 ERCC6L2Q5T890 1561 aa20.1■□□□□ 0.81
LIG1-202ENST00000427526 TRIM52Q96A61 297 aa20.1■□□□□ 0.81
LIG1-202ENST00000427526 PRKCSHP14314 528 aaPredicted RBP20.08■□□□□ 0.8
LIG1-202ENST00000427526 SHROOM2Q13796 1616 aa20.08■□□□□ 0.8
LIG1-202ENST00000427526 ADCY10Q96PN6 1610 aa20.06■□□□□ 0.8
LIG1-202ENST00000427526 CAMSAP2Q08AD1 1489 aa20.06■□□□□ 0.8
LIG1-202ENST00000427526 DNMT1P26358 1616 aaKnown RBP20.05■□□□□ 0.8
LIG1-202ENST00000427526 ROCK1Q13464 1354 aa20.04■□□□□ 0.8
LIG1-202ENST00000427526 ABCC10Q5T3U5 1492 aa20.03■□□□□ 0.8
LIG1-202ENST00000427526 MPHOSPH9Q99550 1183 aa20.03■□□□□ 0.8
LIG1-202ENST00000427526 TSHZ2Q9NRE2 1034 aa20.03■□□□□ 0.8
LIG1-202ENST00000427526 ITSN2Q9NZM3 1697 aa20.01■□□□□ 0.79
LIG1-202ENST00000427526 FKBP8Q14318 412 aa20■□□□□ 0.79
LIG1-202ENST00000427526 CLASP1Q7Z460 1538 aa19.98■□□□□ 0.79
LIG1-202ENST00000427526 HSPA5P11021 654 aaKnown RBP19.98■□□□□ 0.79
LIG1-202ENST00000427526 WASHC2AQ641Q2 1341 aa19.98■□□□□ 0.79
LIG1-202ENST00000427526 FOXD1Q16676 465 aa19.97■□□□□ 0.79
LIG1-202ENST00000427526 CDC42BPAQ5VT25 1732 aa19.95■□□□□ 0.78
LIG1-202ENST00000427526 NCOA1Q15788 1441 aa19.95■□□□□ 0.78
LIG1-202ENST00000427526 L3MBTL2Q969R5 705 aa19.94■□□□□ 0.78
LIG1-202ENST00000427526 ANKRD30BQ9BXX2 1392 aa19.93■□□□□ 0.78
LIG1-202ENST00000427526 HNRNPMP52272 730 aaKnown RBP eCLIP19.93■□□□□ 0.78
LIG1-202ENST00000427526 EIF4G2P78344 907 aaKnown RBP eCLIP19.93■□□□□ 0.781e-11■■■■■ 55.3
LIG1-202ENST00000427526 BCANQ96GW7 911 aa19.93■□□□□ 0.78
LIG1-202ENST00000427526 ABCC2Q92887 1545 aa19.93■□□□□ 0.78
LIG1-202ENST00000427526 RPRD2Q5VT52 1461 aaKnown RBP19.91■□□□□ 0.78
LIG1-202ENST00000427526 SLC4A1APQ9BWU0 796 aaKnown RBP19.89■□□□□ 0.77
LIG1-202ENST00000427526 ANKRD30AQ9BXX3 1397 aa19.89■□□□□ 0.77
LIG1-202ENST00000427526 NEFLP07196 543 aa19.88■□□□□ 0.77
LIG1-202ENST00000427526 ADGRL2O95490 1459 aa19.87■□□□□ 0.77
LIG1-202ENST00000427526 TSPY4P0CV99 314 aa19.87■□□□□ 0.77
LIG1-202ENST00000427526 TSPY10P0CW01 314 aa19.87■□□□□ 0.77
LIG1-202ENST00000427526 TEX14Q8IWB6 1497 aa19.87■□□□□ 0.77
LIG1-202ENST00000427526 CNTLNQ9NXG0 1405 aa19.86■□□□□ 0.77
LIG1-202ENST00000427526 C9orf84Q5VXU9 1444 aa19.85■□□□□ 0.77
LIG1-202ENST00000427526 C11orf95C9JLR9 678 aaPredicted RBP19.84■□□□□ 0.77
LIG1-202ENST00000427526 CROCC2H7BZ55 1655 aa19.84■□□□□ 0.77
LIG1-202ENST00000427526 NBPF8Q3BBV2 869 aa19.84■□□□□ 0.77
LIG1-202ENST00000427526 MBD5Q9P267 1494 aa19.84■□□□□ 0.77
LIG1-202ENST00000427526 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.83■□□□□ 0.77
LIG1-202ENST00000427526 ADGBQ8N7X0 1667 aa19.83■□□□□ 0.76
LIG1-202ENST00000427526 TTC37Q6PGP7 1564 aa19.82■□□□□ 0.76
LIG1-202ENST00000427526 CCDC7Q96M83 1385 aa19.82■□□□□ 0.76
LIG1-202ENST00000427526 ANKRD50Q9ULJ7 1429 aa19.82■□□□□ 0.76
LIG1-202ENST00000427526 CDC42BPBQ9Y5S2 1711 aa19.82■□□□□ 0.76
LIG1-202ENST00000427526 SPATA31E1Q6ZUB1 1445 aa19.81■□□□□ 0.76
LIG1-202ENST00000427526 SAMD9LQ8IVG5 1584 aa19.81■□□□□ 0.76
LIG1-202ENST00000427526 HNRNPUQ00839 825 aaKnown RBP eCLIP19.81■□□□□ 0.76
LIG1-202ENST00000427526 UHRF1BP1LA0JNW5 1464 aa19.81■□□□□ 0.76
LIG1-202ENST00000427526 PZPP20742 1482 aa19.81■□□□□ 0.76
LIG1-202ENST00000427526 SHANK2Q9UPX8 1470 aa19.8■□□□□ 0.76
LIG1-202ENST00000427526 PREX2Q70Z35 1606 aa19.8■□□□□ 0.76
LIG1-202ENST00000427526 ARHGAP5Q13017 1502 aa19.78■□□□□ 0.76
LIG1-202ENST00000427526 ZCCHC11Q5TAX3 1644 aaKnown RBP19.78■□□□□ 0.76
LIG1-202ENST00000427526 KIF15Q9NS87 1388 aa19.76■□□□□ 0.75
LIG1-202ENST00000427526 ARHGEF5Q12774 1597 aa19.76■□□□□ 0.75
LIG1-202ENST00000427526 PRKRIP1Q9H875 184 aaPredicted RBP19.76■□□□□ 0.75
LIG1-202ENST00000427526 CCDC141Q6ZP82 1450 aa19.75■□□□□ 0.75
LIG1-202ENST00000427526 PKD2Q13563 968 aa19.75■□□□□ 0.75
LIG1-202ENST00000427526 CCDC184Q52MB2 194 aa19.75■□□□□ 0.75
LIG1-202ENST00000427526 RSPH4AQ5TD94 716 aa19.75■□□□□ 0.75
LIG1-202ENST00000427526 OSCARQ8IYS5 282 aa19.74■□□□□ 0.75
LIG1-202ENST00000427526 POLR1AO95602 1720 aaPredicted RBP19.74■□□□□ 0.75
LIG1-202ENST00000427526 SYCP2Q9BX26 1530 aa19.74■□□□□ 0.75
LIG1-202ENST00000427526 NUP155O75694 1391 aa19.74■□□□□ 0.75
LIG1-202ENST00000427526 KIF7Q2M1P5 1343 aa19.72■□□□□ 0.75
LIG1-202ENST00000427526 PLCH2O75038 1416 aa19.71■□□□□ 0.75
LIG1-202ENST00000427526 KIAA1107Q9UPP5 1409 aa19.7■□□□□ 0.74
LIG1-202ENST00000427526 EFCAB2Q5VUJ9 269 aa19.69■□□□□ 0.74
LIG1-202ENST00000427526 MYO5CQ9NQX4 1742 aa19.69■□□□□ 0.74
LIG1-202ENST00000427526 ARHGEF12Q9NZN5 1544 aa19.68■□□□□ 0.74
LIG1-202ENST00000427526 RBM19Q9Y4C8 960 aaKnown RBP19.65■□□□□ 0.74
LIG1-202ENST00000427526 PLEKHH2Q8IVE3 1493 aa19.64■□□□□ 0.73
LIG1-202ENST00000427526 MRS2Q9HD23 443 aa19.63■□□□□ 0.73
LIG1-202ENST00000427526 WDR7Q9Y4E6 1490 aa19.62■□□□□ 0.73
LIG1-202ENST00000427526 ERICH6BQ5W0A0 696 aa19.61■□□□□ 0.73
LIG1-202ENST00000427526 FAM9BQ8IZU0 186 aa19.61■□□□□ 0.73
LIG1-202ENST00000427526 ZBED9Q6R2W3 1325 aa19.61■□□□□ 0.73
LIG1-202ENST00000427526 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.6■□□□□ 0.732e-7■■■■□ 24.9
LIG1-202ENST00000427526 ANP32EQ9BTT0 268 aa19.6■□□□□ 0.73
LIG1-202ENST00000427526 TRAPPC8Q9Y2L5 1435 aa19.6■□□□□ 0.73
LIG1-202ENST00000427526 DHX29Q7Z478 1369 aaKnown RBP19.59■□□□□ 0.73
LIG1-202ENST00000427526 BCORL1Q5H9F3 1711 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms