RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 ABCC5O15440 1437 aa39.01■■■■□ 3.83
LDB1-202ENST00000425280 GCC2Q8IWJ2 1684 aa39■■■■□ 3.83
LDB1-202ENST00000425280 RRP7BPQ9NSQ0 103 aa38.96■■■■□ 3.83
LDB1-202ENST00000425280 ZCCHC11Q5TAX3 1644 aaKnown RBP38.95■■■■□ 3.83
LDB1-202ENST00000425280 KDM5BQ9UGL1 1544 aa38.95■■■■□ 3.83
LDB1-202ENST00000425280 ZNF777Q9ULD5 760 aaPredicted RBP38.91■■■■□ 3.82
LDB1-202ENST00000425280 ROCK1Q13464 1354 aa38.91■■■■□ 3.82
LDB1-202ENST00000425280 PREX2Q70Z35 1606 aa38.84■■■■□ 3.81
LDB1-202ENST00000425280 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.83■■■■□ 3.812e-7■■□□□ 11.5
LDB1-202ENST00000425280 KDM6BO15054 1643 aa38.82■■■■□ 3.81
LDB1-202ENST00000425280 TTC37Q6PGP7 1564 aa38.82■■■■□ 3.81
LDB1-202ENST00000425280 CROCC2H7BZ55 1655 aa38.82■■■■□ 3.81
LDB1-202ENST00000425280 CDC42BPBQ9Y5S2 1711 aa38.81■■■■□ 3.8
LDB1-202ENST00000425280 ADGBQ8N7X0 1667 aa38.76■■■■□ 3.8
LDB1-202ENST00000425280 ADGRL2O95490 1459 aa38.71■■■■□ 3.79
LDB1-202ENST00000425280 SAMD9LQ8IVG5 1584 aa38.71■■■■□ 3.79
LDB1-202ENST00000425280 KCNH8Q96L42 1107 aa38.7■■■■□ 3.79
LDB1-202ENST00000425280 MYO5CQ9NQX4 1742 aa38.69■■■■□ 3.78
LDB1-202ENST00000425280 NCOA1Q15788 1441 aa38.69■■■■□ 3.78
LDB1-202ENST00000425280 ARHGEF5Q12774 1597 aa38.67■■■■□ 3.78
LDB1-202ENST00000425280 SHANK2Q9UPX8 1470 aa38.67■■■■□ 3.78
LDB1-202ENST00000425280 SIN3AQ96ST3 1273 aa38.65■■■■□ 3.78
LDB1-202ENST00000425280 ARHGAP5Q13017 1502 aa38.65■■■■□ 3.78
LDB1-202ENST00000425280 MBD5Q9P267 1494 aa38.64■■■■□ 3.78
LDB1-202ENST00000425280 HNRNPMP52272 730 aaKnown RBP eCLIP38.61■■■■□ 3.77
LDB1-202ENST00000425280 ANKRD30AQ9BXX3 1397 aa38.6■■■■□ 3.77
LDB1-202ENST00000425280 TRIM52Q96A61 297 aa38.6■■■■□ 3.77
LDB1-202ENST00000425280 C9orf84Q5VXU9 1444 aa38.59■■■■□ 3.77
LDB1-202ENST00000425280 ZNF316A6NFI3 1004 aaPredicted RBP38.59■■■■□ 3.77
LDB1-202ENST00000425280 ACIN1Q9UKV3 1341 aaKnown RBP38.59■■■■□ 3.77
LDB1-202ENST00000425280 WDR7Q9Y4E6 1490 aa38.58■■■■□ 3.77
LDB1-202ENST00000425280 NEUROD1Q13562 356 aa38.57■■■■□ 3.76
LDB1-202ENST00000425280 PLCH2O75038 1416 aa38.56■■■■□ 3.76
LDB1-202ENST00000425280 DENND4BO75064 1496 aaPredicted RBP38.55■■■■□ 3.76
LDB1-202ENST00000425280 CCDC141Q6ZP82 1450 aa38.54■■■■□ 3.76
LDB1-202ENST00000425280 TSPY4P0CV99 314 aa38.52■■■■□ 3.76
LDB1-202ENST00000425280 TSPY10P0CW01 314 aa38.52■■■■□ 3.76
LDB1-202ENST00000425280 SYCP2Q9BX26 1530 aa38.52■■■■□ 3.76
LDB1-202ENST00000425280 RSPH4AQ5TD94 716 aa38.5■■■■□ 3.75
LDB1-202ENST00000425280 TIMELESSQ9UNS1 1208 aa38.49■■■■□ 3.75
LDB1-202ENST00000425280 PLEKHH2Q8IVE3 1493 aa38.49■■■■□ 3.75
LDB1-202ENST00000425280 MPHOSPH9Q99550 1183 aa38.48■■■■□ 3.75
LDB1-202ENST00000425280 KIAA1107Q9UPP5 1409 aa38.47■■■■□ 3.75
LDB1-202ENST00000425280 ASXL2Q76L83 1435 aa38.45■■■■□ 3.75
LDB1-202ENST00000425280 ANKRD50Q9ULJ7 1429 aa38.42■■■■□ 3.74
LDB1-202ENST00000425280 EFCAB2Q5VUJ9 269 aa38.42■■■■□ 3.74
LDB1-202ENST00000425280 ARAP3Q8WWN8 1544 aa38.41■■■■□ 3.74
LDB1-202ENST00000425280 MAST1Q9Y2H9 1570 aa38.39■■■■□ 3.74
LDB1-202ENST00000425280 ABCA9Q8IUA7 1624 aa38.39■■■■□ 3.74
LDB1-202ENST00000425280 ARHGEF12Q9NZN5 1544 aa38.39■■■■□ 3.74
LDB1-202ENST00000425280 KIF15Q9NS87 1388 aa38.37■■■■□ 3.73
LDB1-202ENST00000425280 NPM1P06748 294 aaKnown RBP eCLIP38.36■■■■□ 3.73
LDB1-202ENST00000425280 ABCC1P33527 1531 aa38.35■■■■□ 3.73
LDB1-202ENST00000425280 PZPP20742 1482 aa38.33■■■■□ 3.73
LDB1-202ENST00000425280 DIEXFQ68CQ4 756 aaKnown RBP38.31■■■■□ 3.72
LDB1-202ENST00000425280 TONSLQ96HA7 1378 aa38.3■■■■□ 3.72
LDB1-202ENST00000425280 SLC4A1APQ9BWU0 796 aaKnown RBP38.29■■■■□ 3.72
LDB1-202ENST00000425280 FOXD1Q16676 465 aa38.26■■■■□ 3.72
LDB1-202ENST00000425280 PPP1R15AO75807 674 aaPredicted RBP38.26■■■■□ 3.71
LDB1-202ENST00000425280 PLXNC1O60486 1568 aa38.24■■■■□ 3.71
LDB1-202ENST00000425280 ANKRD30BQ9BXX2 1392 aa38.23■■■■□ 3.71
LDB1-202ENST00000425280 TRAPPC8Q9Y2L5 1435 aa38.21■■■■□ 3.71
LDB1-202ENST00000425280 FANCAO15360 1455 aa38.21■■■■□ 3.71
LDB1-202ENST00000425280 KDM5DQ9BY66 1539 aa38.18■■■■□ 3.7
LDB1-202ENST00000425280 NUP155O75694 1391 aa38.15■■■■□ 3.7
LDB1-202ENST00000425280 RIMBP3CA6NJZ7 1639 aa38.14■■■■□ 3.7
LDB1-202ENST00000425280 RIMBP3BA6NNM3 1639 aa38.14■■■■□ 3.7
LDB1-202ENST00000425280 RIMBP3Q9UFD9 1639 aa38.14■■■■□ 3.7
LDB1-202ENST00000425280 DUOX2Q9NRD8 1548 aa38.09■■■■□ 3.69
LDB1-202ENST00000425280 RPRD2Q5VT52 1461 aaKnown RBP38.08■■■■□ 3.69
LDB1-202ENST00000425280 PKD2Q13563 968 aa38.07■■■■□ 3.69
LDB1-202ENST00000425280 CYB5RLQ6IPT4 315 aa38.05■■■■□ 3.68
LDB1-202ENST00000425280 ADGRL1O94910 1474 aa38.05■■■■□ 3.68
LDB1-202ENST00000425280 AFAP1Q8N556 730 aa38.05■■■■□ 3.68
LDB1-202ENST00000425280 RTEL1-TNFRSF6BF6WH68 1400 aa38.04■■■■□ 3.68
LDB1-202ENST00000425280 SPAG9O60271 1321 aaKnown RBP38.03■■■■□ 3.68
LDB1-202ENST00000425280 UNC13BO14795 1591 aa38.03■■■■□ 3.68
LDB1-202ENST00000425280 ZFYVE16Q7Z3T8 1539 aa38.02■■■■□ 3.68
LDB1-202ENST00000425280 CD109Q6YHK3 1445 aa38.01■■■■□ 3.67
LDB1-202ENST00000425280 SCAPERQ9BY12 1400 aa38.01■■■■□ 3.67
LDB1-202ENST00000425280 ERBINQ96RT1 1412 aa38■■■■□ 3.67
LDB1-202ENST00000425280 FAM135AQ9P2D6 1515 aa37.97■■■■□ 3.67
LDB1-202ENST00000425280 INO80Q9ULG1 1556 aaPredicted RBP37.95■■■■□ 3.67
LDB1-202ENST00000425280 L3MBTL2Q969R5 705 aa37.94■■■■□ 3.66
LDB1-202ENST00000425280 CFAP74Q9C0B2 1584 aa37.93■■■■□ 3.66
LDB1-202ENST00000425280 TEX14Q8IWB6 1497 aa37.92■■■■□ 3.66
LDB1-202ENST00000425280 ATP7AQ04656 1500 aa37.92■■■■□ 3.66
LDB1-202ENST00000425280 MAGI2Q86UL8 1455 aa37.89■■■■□ 3.66
LDB1-202ENST00000425280 IQGAP3Q86VI3 1631 aa37.87■■■■□ 3.65
LDB1-202ENST00000425280 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.84■■■■□ 3.651e-6■■■□□ 17.7
LDB1-202ENST00000425280 ZNF518AQ6AHZ1 1483 aa37.81■■■■□ 3.64
LDB1-202ENST00000425280 MAP3K4Q9Y6R4 1608 aa37.76■■■■□ 3.64
LDB1-202ENST00000425280 KIDINS220Q9ULH0 1771 aa37.75■■■■□ 3.63
LDB1-202ENST00000425280 GLI2P10070 1586 aa37.75■■■■□ 3.63
LDB1-202ENST00000425280 NEO1Q92859 1461 aa37.75■■■■□ 3.63
LDB1-202ENST00000425280 POGZQ7Z3K3 1410 aa37.75■■■■□ 3.63
LDB1-202ENST00000425280 MYT1LQ9UL68 1186 aa37.73■■■■□ 3.63
LDB1-202ENST00000425280 KDM5CP41229 1560 aa37.72■■■■□ 3.63
LDB1-202ENST00000425280 DEPDC5O75140 1603 aa37.7■■■■□ 3.63
LDB1-202ENST00000425280 MIER1Q8N108 512 aa37.68■■■■□ 3.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms