RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ADCY10Q96PN6 1610 aa15.35■□□□□ 0.05
CUX1-205ENST00000425244 NPM1P06748 294 aaKnown RBP eCLIP15.34■□□□□ 0.05
CUX1-205ENST00000425244 GPATCH8Q9UKJ3 1502 aaKnown RBP15.32■□□□□ 0.04
CUX1-205ENST00000425244 RRP7BPQ9NSQ0 103 aa15.31■□□□□ 0.04
CUX1-205ENST00000425244 UHRF1BP1LA0JNW5 1464 aa15.31■□□□□ 0.04
CUX1-205ENST00000425244 PTPRKQ15262 1439 aa15.31■□□□□ 0.04
CUX1-205ENST00000425244 KDM5BQ9UGL1 1544 aa15.3■□□□□ 0.04
CUX1-205ENST00000425244 MIA2Q96PC5 1412 aa15.3■□□□□ 0.04
CUX1-205ENST00000425244 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.28■□□□□ 0.042e-6■■□□□ 13.4
CUX1-205ENST00000425244 ABCC10Q5T3U5 1492 aa15.27■□□□□ 0.03
CUX1-205ENST00000425244 CDC42BPAQ5VT25 1732 aa15.27■□□□□ 0.03
CUX1-205ENST00000425244 HNRNPMP52272 730 aaKnown RBP eCLIP15.26■□□□□ 0.039e-7■■■□□ 19.2
CUX1-205ENST00000425244 ITSN2Q9NZM3 1697 aa15.26■□□□□ 0.03
CUX1-205ENST00000425244 TTC37Q6PGP7 1564 aa15.25■□□□□ 0.03
CUX1-205ENST00000425244 CAMSAP2Q08AD1 1489 aa15.25■□□□□ 0.03
CUX1-205ENST00000425244 RIMBP3CA6NJZ7 1639 aa15.25■□□□□ 0.03
CUX1-205ENST00000425244 RIMBP3BA6NNM3 1639 aa15.25■□□□□ 0.03
CUX1-205ENST00000425244 RIMBP3Q9UFD9 1639 aa15.25■□□□□ 0.03
CUX1-205ENST00000425244 TCOF1Q13428 1488 aaKnown RBP15.25■□□□□ 0.03
CUX1-205ENST00000425244 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.25■□□□□ 0.037e-8■■■■■ 32
CUX1-205ENST00000425244 ASXL2Q76L83 1435 aa15.24■□□□□ 0.03
CUX1-205ENST00000425244 ARHGAP5Q13017 1502 aa15.22■□□□□ 0.03
CUX1-205ENST00000425244 WDR7Q9Y4E6 1490 aa15.22■□□□□ 0.03
CUX1-205ENST00000425244 HIRIP3Q9BW71 556 aaPredicted RBP15.21■□□□□ 0.03
CUX1-205ENST00000425244 DAPK1P53355 1430 aa15.21■□□□□ 0.03
CUX1-205ENST00000425244 DDX10Q13206 875 aaKnown RBP15.2■□□□□ 0.02
CUX1-205ENST00000425244 ABCC5O15440 1437 aa15.2■□□□□ 0.02
CUX1-205ENST00000425244 CDC42BPBQ9Y5S2 1711 aa15.2■□□□□ 0.02
CUX1-205ENST00000425244 PREX2Q70Z35 1606 aa15.17■□□□□ 0.02
CUX1-205ENST00000425244 NAIPQ13075 1403 aa15.17■□□□□ 0.02
CUX1-205ENST00000425244 TSPY4P0CV99 314 aa15.17■□□□□ 0.02
CUX1-205ENST00000425244 TSPY10P0CW01 314 aa15.17■□□□□ 0.02
CUX1-205ENST00000425244 TRIM52Q96A61 297 aa15.17■□□□□ 0.02
CUX1-205ENST00000425244 MYO5CQ9NQX4 1742 aa15.17■□□□□ 0.02
CUX1-205ENST00000425244 TONSLQ96HA7 1378 aa15.16■□□□□ 0.02
CUX1-205ENST00000425244 DNMT1P26358 1616 aaKnown RBP15.16■□□□□ 0.02
CUX1-205ENST00000425244 PPP1R15AO75807 674 aaPredicted RBP15.16■□□□□ 0.02
CUX1-205ENST00000425244 TIMELESSQ9UNS1 1208 aa15.16■□□□□ 0.02
CUX1-205ENST00000425244 HFM1A2PYH4 1435 aa15.16■□□□□ 0.02
CUX1-205ENST00000425244 EFCAB2Q5VUJ9 269 aa15.15■□□□□ 0.02
CUX1-205ENST00000425244 SAMD9LQ8IVG5 1584 aa15.15■□□□□ 0.02
CUX1-205ENST00000425244 PLCH2O75038 1416 aa15.13■□□□□ 0.01
CUX1-205ENST00000425244 SYCP2Q9BX26 1530 aa15.13■□□□□ 0.01
CUX1-205ENST00000425244 MYT1LQ9UL68 1186 aa15.12■□□□□ 0.01
CUX1-205ENST00000425244 KDM6BO15054 1643 aa15.11■□□□□ 0.01
CUX1-205ENST00000425244 AKNAQ7Z591 1439 aa15.1■□□□□ 0.01
CUX1-205ENST00000425244 C9orf84Q5VXU9 1444 aa15.1■□□□□ 0.01
CUX1-205ENST00000425244 AFAP1Q8N556 730 aa15.09■□□□□ 0.01
CUX1-205ENST00000425244 MBD5Q9P267 1494 aa15.09■□□□□ 0.01
CUX1-205ENST00000425244 ANKRD30AQ9BXX3 1397 aa15.08■□□□□ 0
CUX1-205ENST00000425244 FANCAO15360 1455 aa15.08■□□□□ 0
CUX1-205ENST00000425244 NCOA1Q15788 1441 aa15.08■□□□□ 0
CUX1-205ENST00000425244 CD109Q6YHK3 1445 aa15.07■□□□□ 0
CUX1-205ENST00000425244 ARHGEF12Q9NZN5 1544 aa15.07■□□□□ 0
CUX1-205ENST00000425244 CCDC141Q6ZP82 1450 aa15.07■□□□□ 0
CUX1-205ENST00000425244 ROCK1Q13464 1354 aa15.06■□□□□ 0
CUX1-205ENST00000425244 ABCA9Q8IUA7 1624 aa15.06■□□□□ 0
CUX1-205ENST00000425244 FAM69CQ0P6D2 419 aa15.06■□□□□ 0
CUX1-205ENST00000425244 CROCC2H7BZ55 1655 aa15.06■□□□□ 0
CUX1-205ENST00000425244 PRKCSHP14314 528 aaPredicted RBP15.06■□□□□ 0
CUX1-205ENST00000425244 GCC2Q8IWJ2 1684 aa15.05■□□□□ 0
CUX1-205ENST00000425244 FOXD1Q16676 465 aa15.05■□□□□ 0
CUX1-205ENST00000425244 TRAPPC8Q9Y2L5 1435 aa15.04■□□□□ -0
CUX1-205ENST00000425244 RSPH4AQ5TD94 716 aa15.04■□□□□ -0
CUX1-205ENST00000425244 SUPT16HQ9Y5B9 1047 aaKnown RBP15.04■□□□□ -0
CUX1-205ENST00000425244 KIF15Q9NS87 1388 aa15.04■□□□□ -0
CUX1-205ENST00000425244 BCL11AQ9H165 835 aa15.03■□□□□ -0
CUX1-205ENST00000425244 ADGBQ8N7X0 1667 aa15.03■□□□□ -0
CUX1-205ENST00000425244 PLEKHH2Q8IVE3 1493 aa15.02■□□□□ -0
CUX1-205ENST00000425244 ANP32CO43423 234 aa15.02□□□□□ -0.01
CUX1-205ENST00000425244 ARHGEF5Q12774 1597 aa15.02□□□□□ -0.01
CUX1-205ENST00000425244 SCAPERQ9BY12 1400 aa15.02□□□□□ -0.01
CUX1-205ENST00000425244 ANKRD50Q9ULJ7 1429 aa15.02□□□□□ -0.01
CUX1-205ENST00000425244 ADGRL1O94910 1474 aa15.02□□□□□ -0.01
CUX1-205ENST00000425244 KIAA1107Q9UPP5 1409 aa15.01□□□□□ -0.01
CUX1-205ENST00000425244 ABCC1P33527 1531 aa15.01□□□□□ -0.01
CUX1-205ENST00000425244 SLC4A1APQ9BWU0 796 aaKnown RBP15.01□□□□□ -0.01
CUX1-205ENST00000425244 SPAG9O60271 1321 aaKnown RBP15.01□□□□□ -0.01
CUX1-205ENST00000425244 MPHOSPH9Q99550 1183 aa15□□□□□ -0.01
CUX1-205ENST00000425244 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15□□□□□ -0.011e-6■■□□□ 13.7
CUX1-205ENST00000425244 ADGRL2O95490 1459 aa14.99□□□□□ -0.01
CUX1-205ENST00000425244 SHANK2Q9UPX8 1470 aa14.99□□□□□ -0.01
CUX1-205ENST00000425244 RAPGEF3O95398 923 aa14.97□□□□□ -0.01
CUX1-205ENST00000425244 TSPOAP1O95153 1857 aa14.97□□□□□ -0.01
CUX1-205ENST00000425244 ARAP3Q8WWN8 1544 aa14.96□□□□□ -0.01
CUX1-205ENST00000425244 NUP155O75694 1391 aa14.95□□□□□ -0.02
CUX1-205ENST00000425244 DENND4BO75064 1496 aaPredicted RBP14.93□□□□□ -0.02
CUX1-205ENST00000425244 CCER2I3L3R5 266 aa14.92□□□□□ -0.02
CUX1-205ENST00000425244 DIP2BQ9P265 1576 aa14.91□□□□□ -0.02
CUX1-205ENST00000425244 HSPA5P11021 654 aaKnown RBP14.91□□□□□ -0.02
CUX1-205ENST00000425244 PKD2Q13563 968 aa14.91□□□□□ -0.02
CUX1-205ENST00000425244 BCANQ96GW7 911 aa14.91□□□□□ -0.02
CUX1-205ENST00000425244 L3MBTL2Q969R5 705 aa14.9□□□□□ -0.02
CUX1-205ENST00000425244 MAST1Q9Y2H9 1570 aa14.89□□□□□ -0.03
CUX1-205ENST00000425244 MAP3K4Q9Y6R4 1608 aa14.89□□□□□ -0.03
CUX1-205ENST00000425244 SLC24A1O60721 1099 aa14.88□□□□□ -0.03
CUX1-205ENST00000425244 TRHP20396 242 aaPredicted RBP14.88□□□□□ -0.03
CUX1-205ENST00000425244 ZNF518AQ6AHZ1 1483 aa14.88□□□□□ -0.03
CUX1-205ENST00000425244 ZFYVE16Q7Z3T8 1539 aa14.88□□□□□ -0.03
CUX1-205ENST00000425244 ATP7AQ04656 1500 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms