RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 HOXB1P14653 301 aaPredicted RBP15.77■□□□□ 0.12
LINC01040-201ENST00000425048 HS3ST6Q96QI5 342 aa15.76■□□□□ 0.11
LINC01040-201ENST00000425048 POTEB3A0JP26 581 aa15.72■□□□□ 0.11
LINC01040-201ENST00000425048 POTEBQ6S5H4 581 aa15.72■□□□□ 0.11
LINC01040-201ENST00000425048 ZSWIM6Q9HCJ5 1215 aa15.7■□□□□ 0.1
LINC01040-201ENST00000425048 ERBB3P21860 1342 aa15.67■□□□□ 0.1
LINC01040-201ENST00000425048 SPNS2Q8IVW8 549 aa15.65■□□□□ 0.1
LINC01040-201ENST00000425048 GPR153Q6NV75 609 aa15.62■□□□□ 0.09
LINC01040-201ENST00000425048 HS6ST3Q8IZP7 471 aa15.62■□□□□ 0.09
LINC01040-201ENST00000425048 C2orf72A6NCS6 295 aa15.59■□□□□ 0.09
LINC01040-201ENST00000425048 KIF3CO14782 793 aa15.59■□□□□ 0.09
LINC01040-201ENST00000425048 KRTAP3-3Q9BYR6 98 aa15.59■□□□□ 0.09
LINC01040-201ENST00000425048 KRTAP3-2Q9BYR7 98 aa15.59■□□□□ 0.09
LINC01040-201ENST00000425048 PPP1R37O75864 691 aa15.58■□□□□ 0.08
LINC01040-201ENST00000425048 CHGAP10645 457 aaKnown RBP15.57■□□□□ 0.08
LINC01040-201ENST00000425048 MMRN1Q13201 1228 aa15.57■□□□□ 0.08
LINC01040-201ENST00000425048 ARSIQ5FYB1 569 aa15.55■□□□□ 0.08
LINC01040-201ENST00000425048 TMC2Q8TDI7 906 aa15.55■□□□□ 0.08
LINC01040-201ENST00000425048 VARS2Q5ST30 1063 aaKnown RBP15.54■□□□□ 0.08
LINC01040-201ENST00000425048 ZNF687Q8N1G0 1237 aa15.47■□□□□ 0.07
LINC01040-201ENST00000425048 KHSRPQ92945 711 aaKnown RBP eCLIP15.46■□□□□ 0.07
LINC01040-201ENST00000425048 DNAJC5Q9H3Z4 198 aa15.45■□□□□ 0.06
LINC01040-201ENST00000425048 SLC34A2O95436 690 aa15.44■□□□□ 0.06
LINC01040-201ENST00000425048 ZNF316A6NFI3 1004 aaPredicted RBP15.42■□□□□ 0.06
LINC01040-201ENST00000425048 RYDENQ9NUL5 291 aaKnown RBP15.41■□□□□ 0.06
LINC01040-201ENST00000425048 PCDHGA4Q9Y5G9 962 aa15.39■□□□□ 0.05
LINC01040-201ENST00000425048 NKX1-1Q15270 411 aaPredicted RBP15.38■□□□□ 0.05
LINC01040-201ENST00000425048 NUDT7P0C024 238 aa15.37■□□□□ 0.05
LINC01040-201ENST00000425048 GPHNQ9NQX3 736 aaPredicted RBP15.35■□□□□ 0.05
LINC01040-201ENST00000425048 FOXK1P85037 733 aa15.34■□□□□ 0.05
LINC01040-201ENST00000425048 PLPP6Q8IY26 295 aa15.3■□□□□ 0.04
LINC01040-201ENST00000425048 LHX6Q9UPM6 363 aa15.3■□□□□ 0.04
LINC01040-201ENST00000425048 PTCD2Q8WV60 388 aaKnown RBP15.28■□□□□ 0.04
LINC01040-201ENST00000425048 DSG2Q14126 1118 aa15.26■□□□□ 0.03
LINC01040-201ENST00000425048 DCAF8L2P0C7V8 631 aa15.25■□□□□ 0.03
LINC01040-201ENST00000425048 ANKRD13DQ6ZTN6 518 aa15.23■□□□□ 0.03
LINC01040-201ENST00000425048 TBC1D12O60347 775 aa15.22■□□□□ 0.03
LINC01040-201ENST00000425048 PBX2P40425 430 aa15.21■□□□□ 0.03
LINC01040-201ENST00000425048 PSDA5PKW4 1024 aaPredicted RBP15.2■□□□□ 0.02
LINC01040-201ENST00000425048 GTPBP6O43824 516 aaPredicted RBP15.2■□□□□ 0.02
LINC01040-201ENST00000425048 PTGER2P43116 358 aa15.19■□□□□ 0.02
LINC01040-201ENST00000425048 MYT1LQ9UL68 1186 aa15.19■□□□□ 0.02
LINC01040-201ENST00000425048 KDM4FA0A1W2PPD8 638 aa15.18■□□□□ 0.02
LINC01040-201ENST00000425048 LSM11P83369 360 aaKnown RBP eCLIP15.18■□□□□ 0.02
LINC01040-201ENST00000425048 RNF166Q96A37 237 aaPredicted RBP15.18■□□□□ 0.02
LINC01040-201ENST00000425048 CRISPLD2Q9H0B8 497 aa15.17■□□□□ 0.02
LINC01040-201ENST00000425048 PDE4AP27815 886 aa15.16■□□□□ 0.02
LINC01040-201ENST00000425048 AXIN2Q9Y2T1 843 aa15.13■□□□□ 0.01
LINC01040-201ENST00000425048 POTEEQ6S8J3 1075 aa15.12■□□□□ 0.01
LINC01040-201ENST00000425048 PPP1R15BQ5SWA1 713 aa15.1■□□□□ 0.01
LINC01040-201ENST00000425048 ARHGAP33O14559 1287 aa15.09■□□□□ 0.01
LINC01040-201ENST00000425048 OXER1Q8TDS5 423 aa15.09■□□□□ 0.01
LINC01040-201ENST00000425048 NCKAP5LQ9HCH0 1330 aa15.08■□□□□ 0
LINC01040-201ENST00000425048 UPF1Q92900 1129 aaKnown RBP eCLIP15.06■□□□□ 0
LINC01040-201ENST00000425048 PPP4R3BQ5MIZ7 849 aa15.05■□□□□ -0
LINC01040-201ENST00000425048 LARP6Q9BRS8 491 aaKnown RBP15.04■□□□□ -0
LINC01040-201ENST00000425048 DDX27Q96GQ7 796 aaKnown RBP15□□□□□ -0.01
LINC01040-201ENST00000425048 ADGRD1Q6QNK2 874 aa14.98□□□□□ -0.01
LINC01040-201ENST00000425048 PSEN2P49810 448 aa14.96□□□□□ -0.01
LINC01040-201ENST00000425048 TK2O00142 265 aa14.95□□□□□ -0.02
LINC01040-201ENST00000425048 MFSD10Q14728 455 aa14.94□□□□□ -0.02
LINC01040-201ENST00000425048 KCNH8Q96L42 1107 aa14.94□□□□□ -0.02
LINC01040-201ENST00000425048 DMRTA1Q5VZB9 504 aa14.93□□□□□ -0.02
LINC01040-201ENST00000425048 ZNF454Q8N9F8 522 aa14.93□□□□□ -0.02
LINC01040-201ENST00000425048 ANO8Q9HCE9 1232 aaPredicted RBP14.93□□□□□ -0.02
LINC01040-201ENST00000425048 MAP3K9P80192 1104 aa14.91□□□□□ -0.02
LINC01040-201ENST00000425048 BBXQ8WY36 941 aaPredicted RBP14.91□□□□□ -0.02
LINC01040-201ENST00000425048 EVI5O60447 810 aa14.89□□□□□ -0.03
LINC01040-201ENST00000425048 KCNK17Q96T54 332 aa14.89□□□□□ -0.03
LINC01040-201ENST00000425048 CADPS2Q86UW7 1296 aa14.88□□□□□ -0.03
LINC01040-201ENST00000425048 FOSBP53539 338 aa14.87□□□□□ -0.03
LINC01040-201ENST00000425048 BCL2L12Q9HB09 334 aa14.86□□□□□ -0.03
LINC01040-201ENST00000425048 HRO43593 1189 aa14.85□□□□□ -0.03
LINC01040-201ENST00000425048 STAC3Q96MF2 364 aa14.85□□□□□ -0.03
LINC01040-201ENST00000425048 AMER1Q5JTC6 1135 aaPredicted RBP14.84□□□□□ -0.03
LINC01040-201ENST00000425048 EMILIN3Q9NT22 766 aa14.83□□□□□ -0.04
LINC01040-201ENST00000425048 JPH4Q96JJ6 628 aa14.82□□□□□ -0.04
LINC01040-201ENST00000425048 HCSTQ9UBK5 93 aa14.81□□□□□ -0.04
LINC01040-201ENST00000425048 PTPREP23469 700 aa14.8□□□□□ -0.04
LINC01040-201ENST00000425048 ZDHHC16Q969W1 377 aa14.79□□□□□ -0.04
LINC01040-201ENST00000425048 VPS9D1Q9Y2B5 631 aa14.79□□□□□ -0.04
LINC01040-201ENST00000425048 SLC4A5Q9BY07 1137 aa14.77□□□□□ -0.05
LINC01040-201ENST00000425048 SPRYD3Q8NCJ5 442 aa14.76□□□□□ -0.05
LINC01040-201ENST00000425048 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.75□□□□□ -0.05
LINC01040-201ENST00000425048 ADAM33Q9BZ11 813 aa14.74□□□□□ -0.05
LINC01040-201ENST00000425048 CAMK2BQ13554 666 aa14.72□□□□□ -0.05
LINC01040-201ENST00000425048 KCTD12Q96CX2 325 aaKnown RBP14.71□□□□□ -0.05
LINC01040-201ENST00000425048 RTN4Q9NQC3 1192 aaKnown RBP14.71□□□□□ -0.05
LINC01040-201ENST00000425048 ZBED2Q9BTP6 218 aa14.7□□□□□ -0.06
LINC01040-201ENST00000425048 PCDHGA10Q9Y5H3 936 aa14.69□□□□□ -0.06
LINC01040-201ENST00000425048 BHMG1C9JSJ3 638 aaPredicted RBP14.66□□□□□ -0.06
LINC01040-201ENST00000425048 PHF14O94880 888 aa14.66□□□□□ -0.06
LINC01040-201ENST00000425048 FBXW7Q969H0 707 aa14.66□□□□□ -0.06
LINC01040-201ENST00000425048 TYW1BQ6NUM6 668 aa14.65□□□□□ -0.06
LINC01040-201ENST00000425048 DPYSL4O14531 572 aa14.64□□□□□ -0.07
LINC01040-201ENST00000425048 PLA2G2EQ9NZK7 142 aa14.64□□□□□ -0.07
LINC01040-201ENST00000425048 GOLGA8CPA6NN73 597 aa14.62□□□□□ -0.07
LINC01040-201ENST00000425048 PPP1R3GB7ZBB8 358 aa14.61□□□□□ -0.07
LINC01040-201ENST00000425048 MRPL50Q8N5N7 158 aaKnown RBP14.61□□□□□ -0.07
LINC01040-201ENST00000425048 PAXIP1Q6ZW49 1069 aaPredicted RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms