RNA–Protein interactions for RNA: ENST00000418600.6

SYNGAP1-202, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5 BASIC

Gene SYNGAP1, Length 5,828 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-202ENST00000418600 TMF1P82094 1093 aa22.38■■□□□ 1.17
SYNGAP1-202ENST00000418600 PRG4Q92954 1404 aaPredicted RBP22.38■■□□□ 1.17
SYNGAP1-202ENST00000418600 U2SURPO15042 1029 aaKnown RBP22.35■■□□□ 1.17
SYNGAP1-202ENST00000418600 FOXD1Q16676 465 aa22.35■■□□□ 1.17
SYNGAP1-202ENST00000418600 GOLGA2Q08379 1002 aa22.35■■□□□ 1.17
SYNGAP1-202ENST00000418600 PRDM2Q13029 1718 aa22.34■■□□□ 1.17
SYNGAP1-202ENST00000418600 ATF3P18847 181 aa22.34■■□□□ 1.17
SYNGAP1-202ENST00000418600 MRS2Q9HD23 443 aa22.31■■□□□ 1.16
SYNGAP1-202ENST00000418600 MSH5O43196 834 aa22.29■■□□□ 1.16
SYNGAP1-202ENST00000418600 HIRIP3Q9BW71 556 aaPredicted RBP22.29■■□□□ 1.16
SYNGAP1-202ENST00000418600 NUTM2FA1L443 756 aa22.28■■□□□ 1.16
SYNGAP1-202ENST00000418600 RTF1Q92541 710 aaKnown RBP22.28■■□□□ 1.16
SYNGAP1-202ENST00000418600 ZNF330Q9Y3S2 320 aaPredicted RBP22.28■■□□□ 1.16
SYNGAP1-202ENST00000418600 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.27■■□□□ 1.16
SYNGAP1-202ENST00000418600 POGZQ7Z3K3 1410 aa22.27■■□□□ 1.15
SYNGAP1-202ENST00000418600 EIF3AQ14152 1382 aaKnown RBP22.26■■□□□ 1.15
SYNGAP1-202ENST00000418600 SNAPC4Q5SXM2 1469 aa22.26■■□□□ 1.15
SYNGAP1-202ENST00000418600 HMGXB3Q12766 1538 aa22.25■■□□□ 1.15
SYNGAP1-202ENST00000418600 HNRNPUQ00839 825 aaKnown RBP eCLIP22.25■■□□□ 1.15
SYNGAP1-202ENST00000418600 MORC1Q86VD1 984 aa22.23■■□□□ 1.15
SYNGAP1-202ENST00000418600 NEUROD2Q15784 382 aa22.21■■□□□ 1.15
SYNGAP1-202ENST00000418600 SF3B2Q13435 895 aaKnown RBP22.19■■□□□ 1.14
SYNGAP1-202ENST00000418600 CC2D1BQ5T0F9 858 aaKnown RBP22.19■■□□□ 1.14
SYNGAP1-202ENST00000418600 HSP90AA1P07900 732 aaKnown RBP22.18■■□□□ 1.14
SYNGAP1-202ENST00000418600 PIP4K2BP78356 416 aa22.17■■□□□ 1.14
SYNGAP1-202ENST00000418600 SYNJ2O15056 1496 aa22.17■■□□□ 1.14
SYNGAP1-202ENST00000418600 G3V3G9 751 aa22.16■■□□□ 1.14
SYNGAP1-202ENST00000418600 DCAF8Q5TAQ9 597 aa22.16■■□□□ 1.14
SYNGAP1-202ENST00000418600 ANP32BQ92688 251 aaKnown RBP22.16■■□□□ 1.14
SYNGAP1-202ENST00000418600 VGFO15240 615 aaPredicted RBP22.16■■□□□ 1.14
SYNGAP1-202ENST00000418600 KLHL34Q8N239 644 aa22.16■■□□□ 1.14
SYNGAP1-202ENST00000418600 UPF2Q9HAU5 1272 aaKnown RBP22.16■■□□□ 1.14
SYNGAP1-202ENST00000418600 UACAQ9BZF9 1416 aa22.15■■□□□ 1.14
SYNGAP1-202ENST00000418600 LAMC3Q9Y6N6 1575 aa22.15■■□□□ 1.14
SYNGAP1-202ENST00000418600 VPS8Q8N3P4 1428 aa22.15■■□□□ 1.14
SYNGAP1-202ENST00000418600 TERF2IPQ9NYB0 399 aa22.15■■□□□ 1.14
SYNGAP1-202ENST00000418600 AMPHP49418 695 aa22.15■■□□□ 1.14
SYNGAP1-202ENST00000418600 ANP32AP39687 249 aaKnown RBP22.14■■□□□ 1.14
SYNGAP1-202ENST00000418600 OS9Q13438 667 aaPredicted RBP22.14■■□□□ 1.13
SYNGAP1-202ENST00000418600 CFTRP13569 1480 aa22.13■■□□□ 1.13
SYNGAP1-202ENST00000418600 ARHGAP5Q13017 1502 aa22.13■■□□□ 1.13
SYNGAP1-202ENST00000418600 PSME1Q06323 249 aa22.13■■□□□ 1.13
SYNGAP1-202ENST00000418600 ROCK2O75116 1388 aaKnown RBP22.13■■□□□ 1.13
SYNGAP1-202ENST00000418600 LTV1Q96GA3 475 aaPredicted RBP22.1■■□□□ 1.13
SYNGAP1-202ENST00000418600 TOPBP1Q92547 1522 aa22.1■■□□□ 1.13
SYNGAP1-202ENST00000418600 PROSER2Q86WR7 435 aaPredicted RBP22.08■■□□□ 1.13
SYNGAP1-202ENST00000418600 FTSJ3Q8IY81 847 aaKnown RBP22.06■■□□□ 1.12
SYNGAP1-202ENST00000418600 SIN3AQ96ST3 1273 aa22.06■■□□□ 1.12
SYNGAP1-202ENST00000418600 SETD5Q9C0A6 1442 aa22.06■■□□□ 1.12
SYNGAP1-202ENST00000418600 KANK4Q5T7N3 995 aaPredicted RBP22.06■■□□□ 1.12
SYNGAP1-202ENST00000418600 MPHOSPH9Q99550 1183 aa22.06■■□□□ 1.12
SYNGAP1-202ENST00000418600 IGF1RP08069 1367 aa22.05■■□□□ 1.12
SYNGAP1-202ENST00000418600 THEMISQ8N1K5 641 aaPredicted RBP22.04■■□□□ 1.12
SYNGAP1-202ENST00000418600 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.03■■□□□ 1.12
SYNGAP1-202ENST00000418600 GTF2E1P29083 439 aaPredicted RBP22.02■■□□□ 1.12
SYNGAP1-202ENST00000418600 TRAK1Q9UPV9 953 aa22.02■■□□□ 1.12
SYNGAP1-202ENST00000418600 NUTM2BA6NNL0 878 aaPredicted RBP22.01■■□□□ 1.11
SYNGAP1-202ENST00000418600 NUTM2EB1AL46 878 aaPredicted RBP22.01■■□□□ 1.11
SYNGAP1-202ENST00000418600 NUTM2AQ8IVF1 878 aaPredicted RBP22.01■■□□□ 1.11
SYNGAP1-202ENST00000418600 DNMBPQ6XZF7 1577 aa22■■□□□ 1.11
SYNGAP1-202ENST00000418600 TXNDC2Q86VQ3 553 aa21.98■■□□□ 1.11
SYNGAP1-202ENST00000418600 SYNJ1O43426 1573 aa21.98■■□□□ 1.11
SYNGAP1-202ENST00000418600 ANKLE2Q86XL3 938 aa21.97■■□□□ 1.11
SYNGAP1-202ENST00000418600 CCDC144AA2RUR9 1427 aa21.97■■□□□ 1.11
SYNGAP1-202ENST00000418600 ISY1Q9ULR0 285 aaKnown RBP21.97■■□□□ 1.11
SYNGAP1-202ENST00000418600 SYTL4Q96C24 671 aaPredicted RBP21.96■■□□□ 1.11
SYNGAP1-202ENST00000418600 DMRT2Q9Y5R5 561 aa21.95■■□□□ 1.1
SYNGAP1-202ENST00000418600 POLA1P09884 1462 aaPredicted RBP21.93■■□□□ 1.1
SYNGAP1-202ENST00000418600 C1orf141Q5JVX7 400 aa21.92■■□□□ 1.1
SYNGAP1-202ENST00000418600 CHMP4BQ9H444 224 aaKnown RBP21.92■■□□□ 1.1
SYNGAP1-202ENST00000418600 CHMP4AQ9BY43 222 aa21.92■■□□□ 1.1
SYNGAP1-202ENST00000418600 CDK11BP21127 795 aaKnown RBP21.92■■□□□ 1.1
SYNGAP1-202ENST00000418600 CASC1Q6TDU7 716 aa21.92■■□□□ 1.1
SYNGAP1-202ENST00000418600 TULP1O00294 542 aaPredicted RBP21.91■■□□□ 1.1
SYNGAP1-202ENST00000418600 MINK1Q8N4C8 1332 aaPredicted RBP21.9■■□□□ 1.1
SYNGAP1-202ENST00000418600 COG3Q96JB2 828 aa21.9■■□□□ 1.1
SYNGAP1-202ENST00000418600 CALD1Q05682 793 aaKnown RBP21.89■■□□□ 1.09
SYNGAP1-202ENST00000418600 BICRAQ9NZM4 1560 aa21.88■■□□□ 1.09
SYNGAP1-202ENST00000418600 RAPGEF3O95398 923 aa21.87■■□□□ 1.09
SYNGAP1-202ENST00000418600 TAF7LQ5H9L4 462 aa21.87■■□□□ 1.09
SYNGAP1-202ENST00000418600 AFAP1Q8N556 730 aa21.87■■□□□ 1.09
SYNGAP1-202ENST00000418600 GTF3C3Q9Y5Q9 886 aa21.87■■□□□ 1.09
SYNGAP1-202ENST00000418600 EVC2Q86UK5 1308 aa21.86■■□□□ 1.09
SYNGAP1-202ENST00000418600 ESCO1Q5FWF5 840 aa21.85■■□□□ 1.09
SYNGAP1-202ENST00000418600 U2AF1L5P0DN76 240 aaPredicted RBP21.84■■□□□ 1.09
SYNGAP1-202ENST00000418600 U2AF1Q01081 240 aaKnown RBP eCLIP21.84■■□□□ 1.09
SYNGAP1-202ENST00000418600 GPRASP1Q5JY77 1395 aa21.83■■□□□ 1.09
SYNGAP1-202ENST00000418600 MYOM3Q5VTT5 1437 aa21.82■■□□□ 1.08
SYNGAP1-202ENST00000418600 CHMP3Q9Y3E7 222 aa21.82■■□□□ 1.08
SYNGAP1-202ENST00000418600 CD109Q6YHK3 1445 aa21.82■■□□□ 1.08
SYNGAP1-202ENST00000418600 MS4A1P11836 297 aa21.81■■□□□ 1.08
SYNGAP1-202ENST00000418600 SENP3-EIF4A1A0A087X0R7 540 aa21.81■■□□□ 1.08
SYNGAP1-202ENST00000418600 MAGI1Q96QZ7 1491 aaPredicted RBP21.8■■□□□ 1.08
SYNGAP1-202ENST00000418600 FRAT1Q92837 279 aaPredicted RBP21.8■■□□□ 1.08
SYNGAP1-202ENST00000418600 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.8■■□□□ 1.08
SYNGAP1-202ENST00000418600 PLEKHH2Q8IVE3 1493 aa21.8■■□□□ 1.08
SYNGAP1-202ENST00000418600 KIF15Q9NS87 1388 aa21.79■■□□□ 1.08
SYNGAP1-202ENST00000418600 TTC5Q8N0Z6 440 aa21.79■■□□□ 1.08
SYNGAP1-202ENST00000418600 DHX57Q6P158 1386 aaKnown RBP21.78■■□□□ 1.08
SYNGAP1-202ENST00000418600 KTN1Q86UP2 1357 aaKnown RBP21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms