RNA–Protein interactions for RNA: ENST00000414786.6

SHANK3-202, Transcript of SH3 and multiple ankyrin repeat domains 3, humanhuman

TSL 5

Gene SHANK3, Length 7,394 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3-202ENST00000414786 GORABQ5T7V8 394 aa23.61■■□□□ 1.37
SHANK3-202ENST00000414786 NOL8Q76FK4 1167 aaKnown RBP23.61■■□□□ 1.37
SHANK3-202ENST00000414786 TAF7LQ5H9L4 462 aa23.61■■□□□ 1.37
SHANK3-202ENST00000414786 PATL2C9JE40 543 aaKnown RBP23.58■■□□□ 1.37
SHANK3-202ENST00000414786 FRAT2O75474 233 aaPredicted RBP23.58■■□□□ 1.37
SHANK3-202ENST00000414786 PHF23Q9BUL5 403 aaPredicted RBP23.58■■□□□ 1.36
SHANK3-202ENST00000414786 TOMM22Q9NS69 142 aa23.58■■□□□ 1.36
SHANK3-202ENST00000414786 GZF1Q9H116 711 aaPredicted RBP23.57■■□□□ 1.36
SHANK3-202ENST00000414786 HSCBQ8IWL3 235 aa23.56■■□□□ 1.36
SHANK3-202ENST00000414786 MSNP26038 577 aaKnown RBP23.55■■□□□ 1.36
SHANK3-202ENST00000414786 SAMD1Q6SPF0 538 aaPredicted RBP23.54■■□□□ 1.36
SHANK3-202ENST00000414786 NUTM2FA1L443 756 aa23.53■■□□□ 1.36
SHANK3-202ENST00000414786 MARCH6O60337 910 aa23.53■■□□□ 1.36
SHANK3-202ENST00000414786 MCCP23508 829 aa23.52■■□□□ 1.36
SHANK3-202ENST00000414786 PES1O00541 588 aaKnown RBP23.51■■□□□ 1.35
SHANK3-202ENST00000414786 GTF2E1P29083 439 aaPredicted RBP23.5■■□□□ 1.35
SHANK3-202ENST00000414786 FOXD4L1Q9NU39 408 aa23.5■■□□□ 1.35
SHANK3-202ENST00000414786 KIAA1211Q6ZU35 1233 aa23.5■■□□□ 1.35
SHANK3-202ENST00000414786 LTV1Q96GA3 475 aaPredicted RBP23.5■■□□□ 1.35
SHANK3-202ENST00000414786 L1TD1Q5T7N2 865 aaKnown RBP23.48■■□□□ 1.35
SHANK3-202ENST00000414786 FOXD4L5Q5VV16 416 aaPredicted RBP23.48■■□□□ 1.35
SHANK3-202ENST00000414786 FOXD4L4Q8WXT5 416 aaPredicted RBP23.48■■□□□ 1.35
SHANK3-202ENST00000414786 FBXW7Q969H0 707 aa23.47■■□□□ 1.35
SHANK3-202ENST00000414786 NUTM2DQ5VT03 806 aaPredicted RBP23.47■■□□□ 1.35
SHANK3-202ENST00000414786 CFDP1Q9UEE9 299 aaPredicted RBP23.46■■□□□ 1.35
SHANK3-202ENST00000414786 CDCA8Q53HL2 280 aa23.46■■□□□ 1.35
SHANK3-202ENST00000414786 GGT6Q6P531 493 aa23.45■■□□□ 1.34
SHANK3-202ENST00000414786 CEP89Q96ST8 783 aa23.43■■□□□ 1.34
SHANK3-202ENST00000414786 TRIM6-TRIM34B2RNG4 842 aa23.42■■□□□ 1.34
SHANK3-202ENST00000414786 MORC1Q86VD1 984 aa23.41■■□□□ 1.34
SHANK3-202ENST00000414786 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.4■■□□□ 1.34
SHANK3-202ENST00000414786 SLC4A10Q6U841 1118 aa23.39■■□□□ 1.34
SHANK3-202ENST00000414786 AEBP2Q6ZN18 517 aaPredicted RBP23.39■■□□□ 1.33
SHANK3-202ENST00000414786 NGEFQ8N5V2 710 aa23.36■■□□□ 1.33
SHANK3-202ENST00000414786 DCAF11Q8TEB1 546 aa23.36■■□□□ 1.33
SHANK3-202ENST00000414786 CWC22Q9HCG8 908 aaKnown RBP23.36■■□□□ 1.33
SHANK3-202ENST00000414786 ITPRIPQ8IWB1 547 aa23.34■■□□□ 1.33
SHANK3-202ENST00000414786 FOXD4L6Q3SYB3 417 aaPredicted RBP23.33■■□□□ 1.33
SHANK3-202ENST00000414786 FOXD4L3Q6VB84 417 aaPredicted RBP23.33■■□□□ 1.33
SHANK3-202ENST00000414786 MEX3CQ5U5Q3 659 aaKnown RBP23.32■■□□□ 1.32
SHANK3-202ENST00000414786 SLKQ9H2G2 1235 aaPredicted RBP23.32■■□□□ 1.32
SHANK3-202ENST00000414786 TCEAL9Q9UHQ7 104 aa23.32■■□□□ 1.32
SHANK3-202ENST00000414786 TNNT3P45378 269 aaPredicted RBP23.31■■□□□ 1.32
SHANK3-202ENST00000414786 SIN3AQ96ST3 1273 aa23.31■■□□□ 1.32
SHANK3-202ENST00000414786 NOP58Q9Y2X3 529 aaKnown RBP23.31■■□□□ 1.32
SHANK3-202ENST00000414786 CTDP1Q9Y5B0 961 aaPredicted RBP23.3■■□□□ 1.32
SHANK3-202ENST00000414786 CHMP4BQ9H444 224 aaKnown RBP23.27■■□□□ 1.32
SHANK3-202ENST00000414786 SCRIBQ14160 1630 aa23.26■■□□□ 1.31
SHANK3-202ENST00000414786 SYTL4Q96C24 671 aaPredicted RBP23.25■■□□□ 1.31
SHANK3-202ENST00000414786 CCAR2Q8N163 923 aaKnown RBP23.25■■□□□ 1.31
SHANK3-202ENST00000414786 TRIM34Q9BYJ4 488 aa23.24■■□□□ 1.31
SHANK3-202ENST00000414786 MFAP1P55081 439 aaKnown RBP23.23■■□□□ 1.31
SHANK3-202ENST00000414786 GOLGA6L1Q8N7Z2 621 aa23.23■■□□□ 1.31
SHANK3-202ENST00000414786 U2AF1L5P0DN76 240 aaPredicted RBP23.22■■□□□ 1.31
SHANK3-202ENST00000414786 U2AF1Q01081 240 aaKnown RBP eCLIP23.22■■□□□ 1.31
SHANK3-202ENST00000414786 TPM4P67936 248 aa23.22■■□□□ 1.31
SHANK3-202ENST00000414786 TPD52L1Q16890 204 aaPredicted RBP23.21■■□□□ 1.31
SHANK3-202ENST00000414786 EVA1CP58658 441 aa23.21■■□□□ 1.31
SHANK3-202ENST00000414786 HDGFP51858 240 aaKnown RBP23.21■■□□□ 1.31
SHANK3-202ENST00000414786 MS4A1P11836 297 aa23.21■■□□□ 1.31
SHANK3-202ENST00000414786 BCL11BQ9C0K0 894 aaPredicted RBP23.2■■□□□ 1.3
SHANK3-202ENST00000414786 ZCCHC6Q5VYS8 1495 aaKnown RBP23.2■■□□□ 1.3
SHANK3-202ENST00000414786 PPP1R1BQ9UD71 204 aaPredicted RBP23.19■■□□□ 1.3
SHANK3-202ENST00000414786 TMF1P82094 1093 aa23.19■■□□□ 1.3
SHANK3-202ENST00000414786 HDGFL2Q7Z4V5 671 aaPredicted RBP23.19■■□□□ 1.3
SHANK3-202ENST00000414786 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.17■■□□□ 1.37e-7■■□□□ 12.8
SHANK3-202ENST00000414786 DHX16O60231 1041 aaKnown RBP23.16■■□□□ 1.3
SHANK3-202ENST00000414786 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.16■■□□□ 1.3
SHANK3-202ENST00000414786 FOXD1Q16676 465 aa23.16■■□□□ 1.3
SHANK3-202ENST00000414786 NGDNQ8NEJ9 315 aaKnown RBP23.15■■□□□ 1.3
SHANK3-202ENST00000414786 ERCC6Q03468 1493 aa23.15■■□□□ 1.3
SHANK3-202ENST00000414786 SF3A1Q15459 793 aaKnown RBP23.14■■□□□ 1.29
SHANK3-202ENST00000414786 CLUAP1Q96AJ1 413 aa23.14■■□□□ 1.29
SHANK3-202ENST00000414786 CCDC146Q8IYE0 955 aa23.13■■□□□ 1.29
SHANK3-202ENST00000414786 GPATCH3Q96I76 525 aa23.13■■□□□ 1.29
SHANK3-202ENST00000414786 MTMR7Q9Y216 660 aa23.12■■□□□ 1.29
SHANK3-202ENST00000414786 KDM4AO75164 1064 aa23.12■■□□□ 1.29
SHANK3-202ENST00000414786 TPM3P06753 285 aa23.12■■□□□ 1.29
SHANK3-202ENST00000414786 PCMTD1Q96MG8 357 aaPredicted RBP23.12■■□□□ 1.29
SHANK3-202ENST00000414786 STK31Q9BXU1 1019 aa23.12■■□□□ 1.29
SHANK3-202ENST00000414786 PPP4R2Q9NY27 417 aa23.11■■□□□ 1.29
SHANK3-202ENST00000414786 SLC4A3P48751 1232 aa23.11■■□□□ 1.29
SHANK3-202ENST00000414786 NECTIN2Q92692 538 aa23.1■■□□□ 1.29
SHANK3-202ENST00000414786 FOSBP53539 338 aa23.1■■□□□ 1.29
SHANK3-202ENST00000414786 AMPHP49418 695 aa23.1■■□□□ 1.29
SHANK3-202ENST00000414786 KANK1Q14678 1352 aa23.07■■□□□ 1.28
SHANK3-202ENST00000414786 RILPL2Q969X0 211 aa23.06■■□□□ 1.28
SHANK3-202ENST00000414786 HTATSF1O43719 755 aaKnown RBP23.06■■□□□ 1.28
SHANK3-202ENST00000414786 SPAG9O60271 1321 aaKnown RBP23.06■■□□□ 1.28
SHANK3-202ENST00000414786 VSIG10Q8N0Z9 540 aa23.06■■□□□ 1.28
SHANK3-202ENST00000414786 FYB1O15117 783 aa23.05■■□□□ 1.28
SHANK3-202ENST00000414786 MCTP1Q6DN14 999 aa23.04■■□□□ 1.28
SHANK3-202ENST00000414786 ELL2O00472 640 aaPredicted RBP23.04■■□□□ 1.28
SHANK3-202ENST00000414786 DEKP35659 375 aaKnown RBP23.03■■□□□ 1.28
SHANK3-202ENST00000414786 H3BQV1 296 aa23.03■■□□□ 1.28
SHANK3-202ENST00000414786 IFFO2Q5TF58 517 aa23.03■■□□□ 1.28
SHANK3-202ENST00000414786 IBSPP21815 317 aaPredicted RBP23.03■■□□□ 1.28
SHANK3-202ENST00000414786 SMC4Q9NTJ3 1288 aa23.02■■□□□ 1.28
SHANK3-202ENST00000414786 PAF1Q8N7H5 531 aa23.02■■□□□ 1.28
SHANK3-202ENST00000414786 AKAP17AQ02040 695 aaKnown RBP23.02■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms