RNA–Protein interactions for RNA: ENST00000413578.5

LIMS2-210, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 3

Gene LIMS2, Length 930 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-210ENST00000413578 ATP10AO60312 1499 aa20.25■□□□□ 0.83
LIMS2-210ENST00000413578 HSPA2P54652 639 aa20.25■□□□□ 0.83
LIMS2-210ENST00000413578 EFCAB2Q5VUJ9 269 aa20.25■□□□□ 0.83
LIMS2-210ENST00000413578 ARHGEF12Q9NZN5 1544 aa20.25■□□□□ 0.83
LIMS2-210ENST00000413578 UBTFP17480 764 aaKnown RBP20.24■□□□□ 0.83
LIMS2-210ENST00000413578 TROQ12816 1431 aaPredicted RBP20.23■□□□□ 0.83
LIMS2-210ENST00000413578 C9orf84Q5VXU9 1444 aa20.23■□□□□ 0.83
LIMS2-210ENST00000413578 MLECQ14165 292 aa20.22■□□□□ 0.83
LIMS2-210ENST00000413578 CDK11AQ9UQ88 783 aaPredicted RBP20.22■□□□□ 0.83
LIMS2-210ENST00000413578 KIF14Q15058 1648 aa20.22■□□□□ 0.83
LIMS2-210ENST00000413578 KDM5CP41229 1560 aa20.2■□□□□ 0.82
LIMS2-210ENST00000413578 ZNF518AQ6AHZ1 1483 aa20.19■□□□□ 0.82
LIMS2-210ENST00000413578 MYO5CQ9NQX4 1742 aa20.19■□□□□ 0.82
LIMS2-210ENST00000413578 EHMT2Q96KQ7 1210 aa20.18■□□□□ 0.82
LIMS2-210ENST00000413578 ATP1B4Q9UN42 357 aaPredicted RBP20.18■□□□□ 0.82
LIMS2-210ENST00000413578 FER1L4A9Z1Z3 1794 aa20.18■□□□□ 0.82
LIMS2-210ENST00000413578 CHIC1Q5VXU3 224 aa20.17■□□□□ 0.82
LIMS2-210ENST00000413578 PLPPR3Q6T4P5 718 aa20.17■□□□□ 0.82
LIMS2-210ENST00000413578 AFAP1Q8N556 730 aa20.16■□□□□ 0.82
LIMS2-210ENST00000413578 CLIP1P30622 1438 aa20.15■□□□□ 0.82
LIMS2-210ENST00000413578 ARHGAP5Q13017 1502 aa20.14■□□□□ 0.81
LIMS2-210ENST00000413578 LRRIQ1Q96JM4 1722 aa20.12■□□□□ 0.81
LIMS2-210ENST00000413578 REREQ9P2R6 1566 aa20.12■□□□□ 0.81
LIMS2-210ENST00000413578 MLH3Q9UHC1 1453 aa20.11■□□□□ 0.81
LIMS2-210ENST00000413578 CEBPAP49715 358 aaPredicted RBP20.11■□□□□ 0.81
LIMS2-210ENST00000413578 DIP2CQ9Y2E4 1556 aa20.11■□□□□ 0.81
LIMS2-210ENST00000413578 CASKIN1Q8WXD9 1431 aa20.1■□□□□ 0.81
LIMS2-210ENST00000413578 CERKQ8TCT0 537 aa20.08■□□□□ 0.81
LIMS2-210ENST00000413578 TRAPPC8Q9Y2L5 1435 aa20.08■□□□□ 0.8
LIMS2-210ENST00000413578 PREX1Q8TCU6 1659 aa20.07■□□□□ 0.8
LIMS2-210ENST00000413578 ABCC1P33527 1531 aa20.07■□□□□ 0.8
LIMS2-210ENST00000413578 CCDC18Q5T9S5 1454 aa20.06■□□□□ 0.8
LIMS2-210ENST00000413578 CDC42BPBQ9Y5S2 1711 aa20.06■□□□□ 0.8
LIMS2-210ENST00000413578 AGLP35573 1532 aa20.06■□□□□ 0.8
LIMS2-210ENST00000413578 PREX2Q70Z35 1606 aa20.05■□□□□ 0.8
LIMS2-210ENST00000413578 ABCA6Q8N139 1617 aa20.05■□□□□ 0.8
LIMS2-210ENST00000413578 UHRF1BP1Q6BDS2 1440 aa20.02■□□□□ 0.8
LIMS2-210ENST00000413578 ITSN2Q9NZM3 1697 aa19.99■□□□□ 0.79
LIMS2-210ENST00000413578 FYCO1Q9BQS8 1478 aa19.99■□□□□ 0.79
LIMS2-210ENST00000413578 STRCQ7RTU9 1775 aa19.98■□□□□ 0.79
LIMS2-210ENST00000413578 MYT1LQ9UL68 1186 aa19.98■□□□□ 0.79
LIMS2-210ENST00000413578 DMRT2Q9Y5R5 561 aa19.97■□□□□ 0.79
LIMS2-210ENST00000413578 KIDINS220Q9ULH0 1771 aa19.97■□□□□ 0.79
LIMS2-210ENST00000413578 C3P01024 1663 aa19.95■□□□□ 0.78
LIMS2-210ENST00000413578 GPATCH8Q9UKJ3 1502 aaKnown RBP19.95■□□□□ 0.78
LIMS2-210ENST00000413578 SETD1BQ9UPS6 1966 aaKnown RBP19.95■□□□□ 0.78
LIMS2-210ENST00000413578 PTPRTO14522 1441 aa19.94■□□□□ 0.78
LIMS2-210ENST00000413578 CDC42BPAQ5VT25 1732 aa19.94■□□□□ 0.78
LIMS2-210ENST00000413578 SAMD9LQ8IVG5 1584 aa19.94■□□□□ 0.78
LIMS2-210ENST00000413578 CNTLNQ9NXG0 1405 aa19.93■□□□□ 0.78
LIMS2-210ENST00000413578 SYCP2Q9BX26 1530 aa19.9■□□□□ 0.78
LIMS2-210ENST00000413578 KIAA1107Q9UPP5 1409 aa19.89■□□□□ 0.77
LIMS2-210ENST00000413578 NPATQ14207 1427 aa19.88■□□□□ 0.77
LIMS2-210ENST00000413578 NCOA1Q15788 1441 aa19.88■□□□□ 0.77
LIMS2-210ENST00000413578 ESF1Q9H501 851 aaKnown RBP19.88■□□□□ 0.77
LIMS2-210ENST00000413578 SPAG9O60271 1321 aaKnown RBP19.86■□□□□ 0.77
LIMS2-210ENST00000413578 HNRNPMP52272 730 aaKnown RBP eCLIP19.86■□□□□ 0.77
LIMS2-210ENST00000413578 ZNF777Q9ULD5 760 aaPredicted RBP19.86■□□□□ 0.77
LIMS2-210ENST00000413578 PLXNC1O60486 1568 aa19.86■□□□□ 0.77
LIMS2-210ENST00000413578 LTBP4Q8N2S1 1624 aa19.85■□□□□ 0.77
LIMS2-210ENST00000413578 ZMYM3Q14202 1370 aa19.84■□□□□ 0.77
LIMS2-210ENST00000413578 ATP7AQ04656 1500 aa19.84■□□□□ 0.77
LIMS2-210ENST00000413578 PLEKHH2Q8IVE3 1493 aa19.84■□□□□ 0.77
LIMS2-210ENST00000413578 INO80Q9ULG1 1556 aaPredicted RBP19.83■□□□□ 0.77
LIMS2-210ENST00000413578 MROH2AA6NES4 1674 aa19.83■□□□□ 0.76
LIMS2-210ENST00000413578 CFDP1Q9UEE9 299 aaPredicted RBP19.82■□□□□ 0.76
LIMS2-210ENST00000413578 CCNB3Q8WWL7 1395 aa19.81■□□□□ 0.76
LIMS2-210ENST00000413578 A2MP01023 1474 aa19.8■□□□□ 0.76
LIMS2-210ENST00000413578 IQSEC2Q5JU85 1478 aa19.79■□□□□ 0.76
LIMS2-210ENST00000413578 CAMSAP1Q5T5Y3 1602 aa19.78■□□□□ 0.76
LIMS2-210ENST00000413578 PTPRKQ15262 1439 aa19.77■□□□□ 0.76
LIMS2-210ENST00000413578 MTUS2Q5JR59 1369 aa19.77■□□□□ 0.76
LIMS2-210ENST00000413578 MBD5Q9P267 1494 aa19.77■□□□□ 0.76
LIMS2-210ENST00000413578 SUPT6HQ7KZ85 1726 aaKnown RBP19.75■□□□□ 0.75
LIMS2-210ENST00000413578 TIAM1Q13009 1591 aa19.74■□□□□ 0.75
LIMS2-210ENST00000413578 PLA2R1Q13018 1463 aa19.74■□□□□ 0.75
LIMS2-210ENST00000413578 ZNF644Q9H582 1327 aaPredicted RBP19.74■□□□□ 0.75
LIMS2-210ENST00000413578 PPP6R1Q9UPN7 881 aa19.73■□□□□ 0.75
LIMS2-210ENST00000413578 TCOF1Q13428 1488 aaKnown RBP19.73■□□□□ 0.75
LIMS2-210ENST00000413578 ZNF142P52746 1687 aaPredicted RBP19.72■□□□□ 0.75
LIMS2-210ENST00000413578 CLTCQ00610 1675 aaKnown RBP19.72■□□□□ 0.75
LIMS2-210ENST00000413578 RTEL1-TNFRSF6BF6WH68 1400 aa19.72■□□□□ 0.75
LIMS2-210ENST00000413578 CEP162Q5TB80 1403 aa19.72■□□□□ 0.75
LIMS2-210ENST00000413578 NCKAP5LQ9HCH0 1330 aa19.72■□□□□ 0.75
LIMS2-210ENST00000413578 EHBP1L1Q8N3D4 1523 aa19.71■□□□□ 0.75
LIMS2-210ENST00000413578 DISP3Q9P2K9 1392 aa19.71■□□□□ 0.75
LIMS2-210ENST00000413578 GGT6Q6P531 493 aa19.71■□□□□ 0.75
LIMS2-210ENST00000413578 ILDR2Q71H61 639 aa19.71■□□□□ 0.75
LIMS2-210ENST00000413578 MYO3AQ8NEV4 1616 aa19.71■□□□□ 0.75
LIMS2-210ENST00000413578 CEP170BQ9Y4F5 1589 aaPredicted RBP19.7■□□□□ 0.74
LIMS2-210ENST00000413578 PKD2Q13563 968 aa19.7■□□□□ 0.74
LIMS2-210ENST00000413578 ZNF335Q9H4Z2 1342 aaPredicted RBP19.68■□□□□ 0.74
LIMS2-210ENST00000413578 ADGBQ8N7X0 1667 aa19.68■□□□□ 0.74
LIMS2-210ENST00000413578 DHX29Q7Z478 1369 aaKnown RBP19.68■□□□□ 0.74
LIMS2-210ENST00000413578 A2ML1A8K2U0 1454 aa19.64■□□□□ 0.73
LIMS2-210ENST00000413578 SPATA31D1Q6ZQQ2 1576 aa19.61■□□□□ 0.73
LIMS2-210ENST00000413578 CCDC141Q6ZP82 1450 aa19.61■□□□□ 0.73
LIMS2-210ENST00000413578 SOCS7O14512 581 aa19.61■□□□□ 0.73
LIMS2-210ENST00000413578 FAM135AQ9P2D6 1515 aa19.61■□□□□ 0.73
LIMS2-210ENST00000413578 NCOA2Q15596 1464 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms