RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 HOXB1P14653 301 aaPredicted RBP12.63□□□□□ -0.39
CLK1-203ENST00000409769 HS6ST3Q8IZP7 471 aa12.63□□□□□ -0.39
CLK1-203ENST00000409769 HS3ST6Q96QI5 342 aa12.58□□□□□ -0.4
CLK1-203ENST00000409769 FAM205CA6NFA0 338 aa12.57□□□□□ -0.4
CLK1-203ENST00000409769 DNAJC5Q9H3Z4 198 aa12.53□□□□□ -0.4
CLK1-203ENST00000409769 RYDENQ9NUL5 291 aaKnown RBP12.53□□□□□ -0.4
CLK1-203ENST00000409769 KIF3CO14782 793 aa12.52□□□□□ -0.41
CLK1-203ENST00000409769 CHGAP10645 457 aaKnown RBP12.52□□□□□ -0.41
CLK1-203ENST00000409769 ERBB3P21860 1342 aa12.51□□□□□ -0.41
CLK1-203ENST00000409769 C2orf72A6NCS6 295 aa12.49□□□□□ -0.41
CLK1-203ENST00000409769 GPR153Q6NV75 609 aa12.49□□□□□ -0.41
CLK1-203ENST00000409769 TMC2Q8TDI7 906 aa12.49□□□□□ -0.41
CLK1-203ENST00000409769 POTEB3A0JP26 581 aa12.47□□□□□ -0.41
CLK1-203ENST00000409769 POTEBQ6S5H4 581 aa12.47□□□□□ -0.41
CLK1-203ENST00000409769 PPP1R37O75864 691 aa12.45□□□□□ -0.42
CLK1-203ENST00000409769 SLC34A2O95436 690 aa12.43□□□□□ -0.42
CLK1-203ENST00000409769 SPNS2Q8IVW8 549 aa12.43□□□□□ -0.42
CLK1-203ENST00000409769 KRTAP3-3Q9BYR6 98 aa12.42□□□□□ -0.42
CLK1-203ENST00000409769 KRTAP3-2Q9BYR7 98 aa12.42□□□□□ -0.42
CLK1-203ENST00000409769 VARS2Q5ST30 1063 aaKnown RBP12.41□□□□□ -0.42
CLK1-203ENST00000409769 ARSIQ5FYB1 569 aa12.4□□□□□ -0.42
CLK1-203ENST00000409769 ZNF687Q8N1G0 1237 aa12.38□□□□□ -0.43
CLK1-203ENST00000409769 MMRN1Q13201 1228 aa12.37□□□□□ -0.43
CLK1-203ENST00000409769 ZNF316A6NFI3 1004 aaPredicted RBP12.35□□□□□ -0.43
CLK1-203ENST00000409769 NKX1-1Q15270 411 aaPredicted RBP12.35□□□□□ -0.43
CLK1-203ENST00000409769 GPHNQ9NQX3 736 aaPredicted RBP12.35□□□□□ -0.43
CLK1-203ENST00000409769 FOXK1P85037 733 aa12.34□□□□□ -0.43
CLK1-203ENST00000409769 PCDHGA4Q9Y5G9 962 aa12.33□□□□□ -0.44
CLK1-203ENST00000409769 KHSRPQ92945 711 aaKnown RBP eCLIP12.29□□□□□ -0.441e-7■■■■□ 19.8
CLK1-203ENST00000409769 NUDT7P0C024 238 aa12.28□□□□□ -0.44
CLK1-203ENST00000409769 DCAF8L2P0C7V8 631 aa12.28□□□□□ -0.44
CLK1-203ENST00000409769 PTCD2Q8WV60 388 aaKnown RBP12.28□□□□□ -0.44
CLK1-203ENST00000409769 PSDA5PKW4 1024 aaPredicted RBP12.27□□□□□ -0.45
CLK1-203ENST00000409769 PLPP6Q8IY26 295 aa12.27□□□□□ -0.45
CLK1-203ENST00000409769 TBC1D12O60347 775 aa12.25□□□□□ -0.45
CLK1-203ENST00000409769 PBX2P40425 430 aa12.24□□□□□ -0.45
CLK1-203ENST00000409769 PTGER2P43116 358 aa12.24□□□□□ -0.45
CLK1-203ENST00000409769 DSG2Q14126 1118 aa12.23□□□□□ -0.45
CLK1-203ENST00000409769 GTPBP6O43824 516 aaPredicted RBP12.22□□□□□ -0.45
CLK1-203ENST00000409769 CRISPLD2Q9H0B8 497 aa12.22□□□□□ -0.45
CLK1-203ENST00000409769 LHX6Q9UPM6 363 aa12.22□□□□□ -0.45
CLK1-203ENST00000409769 PDE4AP27815 886 aa12.2□□□□□ -0.46
CLK1-203ENST00000409769 KDM4FA0A1W2PPD8 638 aa12.17□□□□□ -0.46
CLK1-203ENST00000409769 LSM11P83369 360 aaKnown RBP eCLIP12.15□□□□□ -0.465e-9■■□□□ 11.5
CLK1-203ENST00000409769 PPP1R15BQ5SWA1 713 aa12.15□□□□□ -0.46
CLK1-203ENST00000409769 AMER1Q5JTC6 1135 aaPredicted RBP12.13□□□□□ -0.47
CLK1-203ENST00000409769 RNF166Q96A37 237 aaPredicted RBP12.13□□□□□ -0.47
CLK1-203ENST00000409769 MYT1LQ9UL68 1186 aa12.13□□□□□ -0.47
CLK1-203ENST00000409769 ANKRD13DQ6ZTN6 518 aa12.12□□□□□ -0.47
CLK1-203ENST00000409769 OXER1Q8TDS5 423 aa12.12□□□□□ -0.47
CLK1-203ENST00000409769 NCKAP5LQ9HCH0 1330 aa12.11□□□□□ -0.47
CLK1-203ENST00000409769 PPP4R3BQ5MIZ7 849 aa12.1□□□□□ -0.47
CLK1-203ENST00000409769 ARHGAP33O14559 1287 aa12.09□□□□□ -0.47
CLK1-203ENST00000409769 DDX27Q96GQ7 796 aaKnown RBP12.09□□□□□ -0.47
CLK1-203ENST00000409769 MFSD10Q14728 455 aa12.07□□□□□ -0.48
CLK1-203ENST00000409769 BBXQ8WY36 941 aaPredicted RBP12.06□□□□□ -0.48
CLK1-203ENST00000409769 LARP6Q9BRS8 491 aaKnown RBP12.06□□□□□ -0.48
CLK1-203ENST00000409769 POTEEQ6S8J3 1075 aa12.05□□□□□ -0.48
CLK1-203ENST00000409769 UPF1Q92900 1129 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLK1-203ENST00000409769 KCNH8Q96L42 1107 aa12.05□□□□□ -0.48
CLK1-203ENST00000409769 AXIN2Q9Y2T1 843 aa12.03□□□□□ -0.48
CLK1-203ENST00000409769 TK2O00142 265 aa12.02□□□□□ -0.49
CLK1-203ENST00000409769 RTN4Q9NQC3 1192 aaKnown RBP12□□□□□ -0.49
CLK1-203ENST00000409769 ADGRD1Q6QNK2 874 aa11.99□□□□□ -0.49
CLK1-203ENST00000409769 ANO8Q9HCE9 1232 aaPredicted RBP11.98□□□□□ -0.49
CLK1-203ENST00000409769 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.97□□□□□ -0.49
CLK1-203ENST00000409769 MAP3K9P80192 1104 aa11.96□□□□□ -0.49
CLK1-203ENST00000409769 ZNF454Q8N9F8 522 aa11.96□□□□□ -0.49
CLK1-203ENST00000409769 EVI5O60447 810 aa11.95□□□□□ -0.5
CLK1-203ENST00000409769 FOSBP53539 338 aa11.94□□□□□ -0.5
CLK1-203ENST00000409769 JPH4Q96JJ6 628 aa11.94□□□□□ -0.5
CLK1-203ENST00000409769 BCL2L12Q9HB09 334 aa11.94□□□□□ -0.5
CLK1-203ENST00000409769 PSEN2P49810 448 aa11.93□□□□□ -0.5
CLK1-203ENST00000409769 CADPS2Q86UW7 1296 aa11.93□□□□□ -0.5
CLK1-203ENST00000409769 SPRYD3Q8NCJ5 442 aa11.93□□□□□ -0.5
CLK1-203ENST00000409769 KCNK17Q96T54 332 aa11.92□□□□□ -0.5
CLK1-203ENST00000409769 DMRTA1Q5VZB9 504 aa11.91□□□□□ -0.5
CLK1-203ENST00000409769 HRO43593 1189 aa11.9□□□□□ -0.5
CLK1-203ENST00000409769 PTPREP23469 700 aa11.9□□□□□ -0.5
CLK1-203ENST00000409769 CAMK2BQ13554 666 aa11.89□□□□□ -0.51
CLK1-203ENST00000409769 STAC3Q96MF2 364 aa11.89□□□□□ -0.51
CLK1-203ENST00000409769 SLC4A5Q9BY07 1137 aa11.89□□□□□ -0.51
CLK1-203ENST00000409769 EMILIN3Q9NT22 766 aa11.89□□□□□ -0.51
CLK1-203ENST00000409769 ZDHHC16Q969W1 377 aa11.88□□□□□ -0.51
CLK1-203ENST00000409769 HCSTQ9UBK5 93 aa11.85□□□□□ -0.51
CLK1-203ENST00000409769 VPS9D1Q9Y2B5 631 aa11.84□□□□□ -0.51
CLK1-203ENST00000409769 FBXW7Q969H0 707 aa11.83□□□□□ -0.52
CLK1-203ENST00000409769 PHF14O94880 888 aa11.81□□□□□ -0.52
CLK1-203ENST00000409769 ADAM33Q9BZ11 813 aa11.8□□□□□ -0.52
CLK1-203ENST00000409769 TYW1BQ6NUM6 668 aa11.79□□□□□ -0.52
CLK1-203ENST00000409769 EPAS1Q99814 870 aa11.78□□□□□ -0.52
CLK1-203ENST00000409769 ZBED2Q9BTP6 218 aa11.78□□□□□ -0.52
CLK1-203ENST00000409769 PCDHGA10Q9Y5H3 936 aa11.78□□□□□ -0.52
CLK1-203ENST00000409769 PPP1R3GB7ZBB8 358 aa11.76□□□□□ -0.53
CLK1-203ENST00000409769 DPYSL4O14531 572 aa11.76□□□□□ -0.53
CLK1-203ENST00000409769 PAXIP1Q6ZW49 1069 aaPredicted RBP11.76□□□□□ -0.53
CLK1-203ENST00000409769 CFAP44Q96MT7 982 aa11.76□□□□□ -0.53
CLK1-203ENST00000409769 NBPF3Q9H094 633 aa11.75□□□□□ -0.53
CLK1-203ENST00000409769 BHMG1C9JSJ3 638 aaPredicted RBP11.74□□□□□ -0.53
CLK1-203ENST00000409769 KCTD12Q96CX2 325 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms