RNA–Protein interactions for RNA: ENST00000399523.5

UFD1-202, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best) BASIC

Gene UFD1, Length 1,007 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-202ENST00000399523 SCAPERQ9BY12 1400 aa30.56■■■□□ 2.48
UFD1-202ENST00000399523 PLCH2O75038 1416 aa30.54■■■□□ 2.48
UFD1-202ENST00000399523 ATP10AO60312 1499 aa30.53■■■□□ 2.48
UFD1-202ENST00000399523 PREX1Q8TCU6 1659 aa30.52■■■□□ 2.48
UFD1-202ENST00000399523 C9orf84Q5VXU9 1444 aa30.49■■■□□ 2.47
UFD1-202ENST00000399523 ILDR2Q71H61 639 aa30.49■■■□□ 2.47
UFD1-202ENST00000399523 DMRT2Q9Y5R5 561 aa30.48■■■□□ 2.47
UFD1-202ENST00000399523 DISP3Q9P2K9 1392 aa30.47■■■□□ 2.47
UFD1-202ENST00000399523 CEBPAP49715 358 aaPredicted RBP30.46■■■□□ 2.47
UFD1-202ENST00000399523 STRCQ7RTU9 1775 aa30.46■■■□□ 2.47
UFD1-202ENST00000399523 SETD1BQ9UPS6 1966 aaKnown RBP30.45■■■□□ 2.47
UFD1-202ENST00000399523 SOCS7O14512 581 aa30.45■■■□□ 2.47
UFD1-202ENST00000399523 CDK13Q14004 1512 aaKnown RBP30.45■■■□□ 2.47
UFD1-202ENST00000399523 EEA1Q15075 1411 aa30.45■■■□□ 2.46
UFD1-202ENST00000399523 EFCAB2Q5VUJ9 269 aa30.42■■■□□ 2.46
UFD1-202ENST00000399523 UHRF1BP1Q6BDS2 1440 aa30.37■■■□□ 2.45
UFD1-202ENST00000399523 MYO5CQ9NQX4 1742 aa30.36■■■□□ 2.45
UFD1-202ENST00000399523 ZNF518AQ6AHZ1 1483 aa30.33■■■□□ 2.45
UFD1-202ENST00000399523 PTPRTO14522 1441 aa30.31■■■□□ 2.44
UFD1-202ENST00000399523 KDM5CP41229 1560 aa30.31■■■□□ 2.44
UFD1-202ENST00000399523 AFAP1Q8N556 730 aa30.29■■■□□ 2.44
UFD1-202ENST00000399523 CDK11AQ9UQ88 783 aaPredicted RBP30.27■■■□□ 2.44
UFD1-202ENST00000399523 REREQ9P2R6 1566 aa30.25■■■□□ 2.43
UFD1-202ENST00000399523 KIF14Q15058 1648 aa30.24■■■□□ 2.43
UFD1-202ENST00000399523 DIP2CQ9Y2E4 1556 aa30.24■■■□□ 2.43
UFD1-202ENST00000399523 FMN1Q68DA7 1419 aa30.23■■■□□ 2.43
UFD1-202ENST00000399523 SPATA31D1Q6ZQQ2 1576 aa30.23■■■□□ 2.43
UFD1-202ENST00000399523 ARHGAP5Q13017 1502 aa30.22■■■□□ 2.43
UFD1-202ENST00000399523 C3P01024 1663 aa30.21■■■□□ 2.43
UFD1-202ENST00000399523 ATP1B4Q9UN42 357 aaPredicted RBP30.21■■■□□ 2.43
UFD1-202ENST00000399523 LTBP4Q8N2S1 1624 aa30.2■■■□□ 2.43
UFD1-202ENST00000399523 TROQ12816 1431 aaPredicted RBP30.19■■■□□ 2.42
UFD1-202ENST00000399523 MLH3Q9UHC1 1453 aa30.19■■■□□ 2.42
UFD1-202ENST00000399523 AGLP35573 1532 aa30.17■■■□□ 2.42
UFD1-202ENST00000399523 TRAPPC8Q9Y2L5 1435 aa30.17■■■□□ 2.42
UFD1-202ENST00000399523 MYT1LQ9UL68 1186 aa30.17■■■□□ 2.42
UFD1-202ENST00000399523 IQSEC2Q5JU85 1478 aa30.17■■■□□ 2.42
UFD1-202ENST00000399523 ABCA6Q8N139 1617 aa30.15■■■□□ 2.42
UFD1-202ENST00000399523 ESF1Q9H501 851 aaKnown RBP30.12■■■□□ 2.41
UFD1-202ENST00000399523 CLIP1P30622 1438 aa30.12■■■□□ 2.41
UFD1-202ENST00000399523 NCOA1Q15788 1441 aa30.12■■■□□ 2.41
UFD1-202ENST00000399523 ARHGAP35Q9NRY4 1499 aa30.11■■■□□ 2.41
UFD1-202ENST00000399523 CDC42BPBQ9Y5S2 1711 aa30.1■■■□□ 2.41
UFD1-202ENST00000399523 CNTLNQ9NXG0 1405 aa30.07■■■□□ 2.4
UFD1-202ENST00000399523 UBTFP17480 764 aaKnown RBP30.04■■■□□ 2.4
UFD1-202ENST00000399523 ABCC1P33527 1531 aa30.04■■■□□ 2.4
UFD1-202ENST00000399523 LRRIQ1Q96JM4 1722 aa30.02■■■□□ 2.4
UFD1-202ENST00000399523 PREX2Q70Z35 1606 aa30.01■■■□□ 2.39
UFD1-202ENST00000399523 KIDINS220Q9ULH0 1771 aa30.01■■■□□ 2.39
UFD1-202ENST00000399523 NPATQ14207 1427 aa30.01■■■□□ 2.39
UFD1-202ENST00000399523 ITSN2Q9NZM3 1697 aa29.99■■■□□ 2.39
UFD1-202ENST00000399523 CAMSAP1Q5T5Y3 1602 aa29.99■■■□□ 2.39
UFD1-202ENST00000399523 MROH2AA6NES4 1674 aa29.95■■■□□ 2.39
UFD1-202ENST00000399523 ZMYM3Q14202 1370 aa29.93■■■□□ 2.38
UFD1-202ENST00000399523 EHMT2Q96KQ7 1210 aa29.93■■■□□ 2.38
UFD1-202ENST00000399523 ZNF335Q9H4Z2 1342 aaPredicted RBP29.91■■■□□ 2.38
UFD1-202ENST00000399523 NCKAP5LQ9HCH0 1330 aa29.9■■■□□ 2.38
UFD1-202ENST00000399523 UBAP1LF5GYI3 381 aa29.88■■■□□ 2.37
UFD1-202ENST00000399523 SAMD9LQ8IVG5 1584 aa29.87■■■□□ 2.37
UFD1-202ENST00000399523 CDC42BPAQ5VT25 1732 aa29.87■■■□□ 2.37
UFD1-202ENST00000399523 CCDC18Q5T9S5 1454 aa29.86■■■□□ 2.37
UFD1-202ENST00000399523 PKD2Q13563 968 aa29.85■■■□□ 2.37
UFD1-202ENST00000399523 PLA2R1Q13018 1463 aa29.85■■■□□ 2.37
UFD1-202ENST00000399523 CASKIN1Q8WXD9 1431 aa29.83■■■□□ 2.37
UFD1-202ENST00000399523 ZNF142P52746 1687 aaPredicted RBP29.82■■■□□ 2.36
UFD1-202ENST00000399523 TCOF1Q13428 1488 aaKnown RBP29.8■■■□□ 2.36
UFD1-202ENST00000399523 SPAG9O60271 1321 aaKnown RBP29.8■■■□□ 2.36
UFD1-202ENST00000399523 SUPT6HQ7KZ85 1726 aaKnown RBP29.79■■■□□ 2.36
UFD1-202ENST00000399523 MYO3AQ8NEV4 1616 aa29.78■■■□□ 2.36
UFD1-202ENST00000399523 PTPRKQ15262 1439 aa29.78■■■□□ 2.36
UFD1-202ENST00000399523 CLTCQ00610 1675 aaKnown RBP29.77■■■□□ 2.36
UFD1-202ENST00000399523 SYCP2Q9BX26 1530 aa29.76■■■□□ 2.36
UFD1-202ENST00000399523 ZNF777Q9ULD5 760 aaPredicted RBP29.76■■■□□ 2.35
UFD1-202ENST00000399523 CEP170BQ9Y4F5 1589 aaPredicted RBP29.76■■■□□ 2.35
UFD1-202ENST00000399523 PLXNC1O60486 1568 aa29.75■■■□□ 2.35
UFD1-202ENST00000399523 HNRNPMP52272 730 aaKnown RBP eCLIP29.74■■■□□ 2.35
UFD1-202ENST00000399523 GPATCH8Q9UKJ3 1502 aaKnown RBP29.73■■■□□ 2.35
UFD1-202ENST00000399523 ATP7AQ04656 1500 aa29.72■■■□□ 2.35
UFD1-202ENST00000399523 KIAA1107Q9UPP5 1409 aa29.71■■■□□ 2.35
UFD1-202ENST00000399523 A2MP01023 1474 aa29.71■■■□□ 2.35
UFD1-202ENST00000399523 PPP6R1Q9UPN7 881 aa29.7■■■□□ 2.35
UFD1-202ENST00000399523 INO80Q9ULG1 1556 aaPredicted RBP29.69■■■□□ 2.34
UFD1-202ENST00000399523 GGT6Q6P531 493 aa29.67■■■□□ 2.34
UFD1-202ENST00000399523 PLEKHH2Q8IVE3 1493 aa29.66■■■□□ 2.34
UFD1-202ENST00000399523 FYCO1Q9BQS8 1478 aa29.65■■■□□ 2.34
UFD1-202ENST00000399523 A2ML1A8K2U0 1454 aa29.63■■■□□ 2.33
UFD1-202ENST00000399523 HSPA1LP34931 641 aa29.63■■■□□ 2.33
UFD1-202ENST00000399523 CFDP1Q9UEE9 299 aaPredicted RBP29.62■■■□□ 2.33
UFD1-202ENST00000399523 DNMT1P26358 1616 aaKnown RBP29.6■■■□□ 2.33
UFD1-202ENST00000399523 MED1Q15648 1581 aaPredicted RBP29.6■■■□□ 2.33
UFD1-202ENST00000399523 TOM1O60784 492 aa29.57■■■□□ 2.32
UFD1-202ENST00000399523 ADGBQ8N7X0 1667 aa29.56■■■□□ 2.32
UFD1-202ENST00000399523 CPS1P31327 1500 aa29.56■■■□□ 2.32
UFD1-202ENST00000399523 PIP4K2BP78356 416 aa29.55■■■□□ 2.32
UFD1-202ENST00000399523 CCNB3Q8WWL7 1395 aa29.54■■■□□ 2.32
UFD1-202ENST00000399523 SCAF1Q9H7N4 1312 aaKnown RBP29.54■■■□□ 2.32
UFD1-202ENST00000399523 SHANK2Q9UPX8 1470 aa29.53■■■□□ 2.32
UFD1-202ENST00000399523 NEURL4Q96JN8 1562 aa29.52■■■□□ 2.32
UFD1-202ENST00000399523 POLR1AO95602 1720 aaPredicted RBP29.51■■■□□ 2.32
UFD1-202ENST00000399523 CHIC1Q5VXU3 224 aa29.47■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms