RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 TRHP20396 242 aaPredicted RBP19.07■□□□□ 0.64
SHROOM1-203ENST00000378679 URB2Q14146 1524 aaKnown RBP19.06■□□□□ 0.64
SHROOM1-203ENST00000378679 SNAPC4Q5SXM2 1469 aa19.06■□□□□ 0.64
SHROOM1-203ENST00000378679 RTL5Q5HYW3 569 aaPredicted RBP19.05■□□□□ 0.64
SHROOM1-203ENST00000378679 KNSTRNQ9Y448 316 aa19.04■□□□□ 0.64
SHROOM1-203ENST00000378679 NCOA2Q15596 1464 aa19.03■□□□□ 0.64
SHROOM1-203ENST00000378679 FYCO1Q9BQS8 1478 aa19.03■□□□□ 0.64
SHROOM1-203ENST00000378679 PRG4Q92954 1404 aaPredicted RBP19.02■□□□□ 0.64
SHROOM1-203ENST00000378679 EFCAB5A4FU69 1503 aa19■□□□□ 0.63
SHROOM1-203ENST00000378679 ANP32EQ9BTT0 268 aa18.99■□□□□ 0.63
SHROOM1-203ENST00000378679 RRBP1Q9P2E9 1410 aaKnown RBP18.98■□□□□ 0.63
SHROOM1-203ENST00000378679 TMF1P82094 1093 aa18.97■□□□□ 0.63
SHROOM1-203ENST00000378679 SUPT16HQ9Y5B9 1047 aaKnown RBP18.97■□□□□ 0.63
SHROOM1-203ENST00000378679 POGKQ9P215 609 aa18.96■□□□□ 0.63
SHROOM1-203ENST00000378679 PRDM2Q13029 1718 aa18.96■□□□□ 0.63
SHROOM1-203ENST00000378679 BCL11AQ9H165 835 aa18.95■□□□□ 0.62
SHROOM1-203ENST00000378679 NBR1Q14596 966 aa18.94■□□□□ 0.62
SHROOM1-203ENST00000378679 KIAA0586Q9BVV6 1533 aa18.94■□□□□ 0.62
SHROOM1-203ENST00000378679 BIVM-ERCC5R4GMW8 1640 aa18.94■□□□□ 0.62
SHROOM1-203ENST00000378679 CC2D1BQ5T0F9 858 aaKnown RBP18.94■□□□□ 0.62
SHROOM1-203ENST00000378679 ZNF608Q9ULD9 1512 aaPredicted RBP18.93■□□□□ 0.62
SHROOM1-203ENST00000378679 WASHC2CQ9Y4E1 1318 aa18.91■□□□□ 0.62
SHROOM1-203ENST00000378679 ROCK2O75116 1388 aaKnown RBP18.9■□□□□ 0.62
SHROOM1-203ENST00000378679 SAFB2Q14151 953 aaKnown RBP eCLIP18.9■□□□□ 0.62
SHROOM1-203ENST00000378679 TIAM1Q13009 1591 aa18.88■□□□□ 0.61
SHROOM1-203ENST00000378679 ZBTB47Q9UFB7 747 aaPredicted RBP18.88■□□□□ 0.61
SHROOM1-203ENST00000378679 KIF15Q9NS87 1388 aa18.88■□□□□ 0.61
SHROOM1-203ENST00000378679 TNNT2P45379 298 aaPredicted RBP18.87■□□□□ 0.61
SHROOM1-203ENST00000378679 SYNJ2O15056 1496 aa18.87■□□□□ 0.61
SHROOM1-203ENST00000378679 UACAQ9BZF9 1416 aa18.86■□□□□ 0.61
SHROOM1-203ENST00000378679 CCER2I3L3R5 266 aa18.86■□□□□ 0.61
SHROOM1-203ENST00000378679 AFAP1Q8N556 730 aa18.86■□□□□ 0.61
SHROOM1-203ENST00000378679 CCDC136Q96JN2 1154 aa18.86■□□□□ 0.61
SHROOM1-203ENST00000378679 STK26Q9P289 416 aa18.86■□□□□ 0.61
SHROOM1-203ENST00000378679 NPM2Q86SE8 214 aaKnown RBP18.85■□□□□ 0.61
SHROOM1-203ENST00000378679 PLEKHG5O94827 1062 aa18.85■□□□□ 0.61
SHROOM1-203ENST00000378679 C14orf37Q86TY3 774 aa18.85■□□□□ 0.61
SHROOM1-203ENST00000378679 PPM1GO15355 546 aaPredicted RBP18.84■□□□□ 0.61
SHROOM1-203ENST00000378679 TROQ12816 1431 aaPredicted RBP18.84■□□□□ 0.61
SHROOM1-203ENST00000378679 CCDC144AA2RUR9 1427 aa18.83■□□□□ 0.61
SHROOM1-203ENST00000378679 ANKRD50Q9ULJ7 1429 aa18.83■□□□□ 0.6
SHROOM1-203ENST00000378679 CFAP53Q96M91 514 aa18.83■□□□□ 0.6
SHROOM1-203ENST00000378679 IQGAP2Q13576 1575 aa18.82■□□□□ 0.6
SHROOM1-203ENST00000378679 GRIN2AQ12879 1464 aa18.81■□□□□ 0.6
SHROOM1-203ENST00000378679 ST20-MTHFSA0A0A6YYL1 179 aa18.81■□□□□ 0.6
SHROOM1-203ENST00000378679 NUTM2DQ5VT03 806 aaPredicted RBP18.81■□□□□ 0.6
SHROOM1-203ENST00000378679 CUL7Q14999 1698 aa18.81■□□□□ 0.6
SHROOM1-203ENST00000378679 SRPK2P78362 688 aaKnown RBP18.8■□□□□ 0.6
SHROOM1-203ENST00000378679 EPRSP07814 1512 aaKnown RBP18.8■□□□□ 0.6
SHROOM1-203ENST00000378679 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.8■□□□□ 0.6
SHROOM1-203ENST00000378679 CDK13Q14004 1512 aaKnown RBP18.8■□□□□ 0.6
SHROOM1-203ENST00000378679 NEUROD2Q15784 382 aa18.78■□□□□ 0.6
SHROOM1-203ENST00000378679 HDGFP51858 240 aaKnown RBP18.78■□□□□ 0.6
SHROOM1-203ENST00000378679 MIA2Q96PC5 1412 aa18.78■□□□□ 0.6
SHROOM1-203ENST00000378679 FAM69CQ0P6D2 419 aa18.78■□□□□ 0.6
SHROOM1-203ENST00000378679 EHBP1L1Q8N3D4 1523 aa18.78■□□□□ 0.6
SHROOM1-203ENST00000378679 MAGI1Q96QZ7 1491 aaPredicted RBP18.77■□□□□ 0.59
SHROOM1-203ENST00000378679 PLB1Q6P1J6 1458 aa18.76■□□□□ 0.59
SHROOM1-203ENST00000378679 PCF11O94913 1555 aaKnown RBP18.75■□□□□ 0.59
SHROOM1-203ENST00000378679 TSHZ2Q9NRE2 1034 aa18.73■□□□□ 0.59
SHROOM1-203ENST00000378679 ZBTB7CA1YPR0 619 aa18.73■□□□□ 0.59
SHROOM1-203ENST00000378679 HECW1Q76N89 1606 aa18.73■□□□□ 0.59
SHROOM1-203ENST00000378679 EIF5BO60841 1220 aaKnown RBP18.72■□□□□ 0.59
SHROOM1-203ENST00000378679 HFM1A2PYH4 1435 aa18.72■□□□□ 0.59
SHROOM1-203ENST00000378679 ARHGAP5Q13017 1502 aa18.71■□□□□ 0.59
SHROOM1-203ENST00000378679 TRAK1Q9UPV9 953 aa18.7■□□□□ 0.58
SHROOM1-203ENST00000378679 MORC1Q86VD1 984 aa18.69■□□□□ 0.58
SHROOM1-203ENST00000378679 KTN1Q86UP2 1357 aaKnown RBP18.69■□□□□ 0.58
SHROOM1-203ENST00000378679 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.69■□□□□ 0.584e-6■■■■□ 23.5
SHROOM1-203ENST00000378679 NUDCQ9Y266 331 aa18.69■□□□□ 0.58
SHROOM1-203ENST00000378679 U2SURPO15042 1029 aaKnown RBP18.68■□□□□ 0.58
SHROOM1-203ENST00000378679 USP47Q96K76 1375 aa18.68■□□□□ 0.58
SHROOM1-203ENST00000378679 C9orf84Q5VXU9 1444 aa18.66■□□□□ 0.58
SHROOM1-203ENST00000378679 MAP3K1Q13233 1512 aa18.66■□□□□ 0.58
SHROOM1-203ENST00000378679 NAIPQ13075 1403 aa18.65■□□□□ 0.58
SHROOM1-203ENST00000378679 ANP32AP39687 249 aaKnown RBP18.65■□□□□ 0.58
SHROOM1-203ENST00000378679 RALBP1Q15311 655 aa18.65■□□□□ 0.58
SHROOM1-203ENST00000378679 DAPK1P53355 1430 aa18.63■□□□□ 0.57
SHROOM1-203ENST00000378679 LMOD2Q6P5Q4 547 aa18.63■□□□□ 0.57
SHROOM1-203ENST00000378679 MAPK8IP3Q9UPT6 1336 aa18.63■□□□□ 0.57
SHROOM1-203ENST00000378679 RTN4Q9NQC3 1192 aaKnown RBP18.62■□□□□ 0.57
SHROOM1-203ENST00000378679 EIF3AQ14152 1382 aaKnown RBP18.62■□□□□ 0.57
SHROOM1-203ENST00000378679 SUPT6HQ7KZ85 1726 aaKnown RBP18.61■□□□□ 0.57
SHROOM1-203ENST00000378679 SOX12O15370 315 aa18.61■□□□□ 0.57
SHROOM1-203ENST00000378679 RBM19Q9Y4C8 960 aaKnown RBP18.61■□□□□ 0.57
SHROOM1-203ENST00000378679 VGFO15240 615 aaPredicted RBP18.61■□□□□ 0.57
SHROOM1-203ENST00000378679 PRKRIP1Q9H875 184 aaPredicted RBP18.6■□□□□ 0.57
SHROOM1-203ENST00000378679 ARHGEF11O15085 1522 aa18.6■□□□□ 0.57
SHROOM1-203ENST00000378679 SCAPERQ9BY12 1400 aa18.59■□□□□ 0.57
SHROOM1-203ENST00000378679 PANK3Q9H999 370 aa18.59■□□□□ 0.57
SHROOM1-203ENST00000378679 HDGFL2Q7Z4V5 671 aaPredicted RBP18.58■□□□□ 0.57
SHROOM1-203ENST00000378679 NLRP13Q86W25 1043 aa18.58■□□□□ 0.56
SHROOM1-203ENST00000378679 RAPGEF3O95398 923 aa18.56■□□□□ 0.56
SHROOM1-203ENST00000378679 NBPF8Q3BBV2 869 aa18.56■□□□□ 0.56
SHROOM1-203ENST00000378679 LAS1LQ9Y4W2 734 aaKnown RBP18.56■□□□□ 0.56
SHROOM1-203ENST00000378679 KIF7Q2M1P5 1343 aa18.54■□□□□ 0.56
SHROOM1-203ENST00000378679 KIAA1107Q9UPP5 1409 aa18.53■□□□□ 0.56
SHROOM1-203ENST00000378679 PLEKHH2Q8IVE3 1493 aa18.53■□□□□ 0.56
SHROOM1-203ENST00000378679 EID1Q9Y6B2 187 aa18.53■□□□□ 0.56
SHROOM1-203ENST00000378679 ABCC5O15440 1437 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms