RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 BIVM-ERCC5R4GMW8 1640 aa19.52■□□□□ 0.72
TCOF1-202ENST00000377797 MLECQ14165 292 aa19.49■□□□□ 0.71
TCOF1-202ENST00000377797 RRBP1Q9P2E9 1410 aaKnown RBP19.49■□□□□ 0.71
TCOF1-202ENST00000377797 PRDM2Q13029 1718 aa19.49■□□□□ 0.71
TCOF1-202ENST00000377797 KNSTRNQ9Y448 316 aa19.48■□□□□ 0.71
TCOF1-202ENST00000377797 SLC24A1O60721 1099 aa19.47■□□□□ 0.71
TCOF1-202ENST00000377797 PRG4Q92954 1404 aaPredicted RBP19.46■□□□□ 0.71
TCOF1-202ENST00000377797 SENP3-EIF4A1A0A087X0R7 540 aa19.46■□□□□ 0.71
TCOF1-202ENST00000377797 CYB5RLQ6IPT4 315 aa19.45■□□□□ 0.7
TCOF1-202ENST00000377797 TMF1P82094 1093 aa19.42■□□□□ 0.7
TCOF1-202ENST00000377797 TRHP20396 242 aaPredicted RBP19.42■□□□□ 0.7
TCOF1-202ENST00000377797 KIAA0586Q9BVV6 1533 aa19.42■□□□□ 0.7
TCOF1-202ENST00000377797 TIAM1Q13009 1591 aa19.42■□□□□ 0.7
TCOF1-202ENST00000377797 IRX6P78412 446 aaPredicted RBP19.4■□□□□ 0.7
TCOF1-202ENST00000377797 POGKQ9P215 609 aa19.38■□□□□ 0.69
TCOF1-202ENST00000377797 CUL7Q14999 1698 aa19.37■□□□□ 0.69
TCOF1-202ENST00000377797 ZNF608Q9ULD9 1512 aaPredicted RBP19.37■□□□□ 0.69
TCOF1-202ENST00000377797 ROCK2O75116 1388 aaKnown RBP19.37■□□□□ 0.69
TCOF1-202ENST00000377797 CC2D1BQ5T0F9 858 aaKnown RBP19.36■□□□□ 0.69
TCOF1-202ENST00000377797 UACAQ9BZF9 1416 aa19.35■□□□□ 0.69
TCOF1-202ENST00000377797 SYNJ2O15056 1496 aa19.35■□□□□ 0.69
TCOF1-202ENST00000377797 CCER2I3L3R5 266 aa19.34■□□□□ 0.69
TCOF1-202ENST00000377797 IQGAP2Q13576 1575 aa19.33■□□□□ 0.69
TCOF1-202ENST00000377797 BCL11AQ9H165 835 aa19.32■□□□□ 0.68
TCOF1-202ENST00000377797 ZBTB47Q9UFB7 747 aaPredicted RBP19.32■□□□□ 0.68
TCOF1-202ENST00000377797 KIF15Q9NS87 1388 aa19.32■□□□□ 0.68
TCOF1-202ENST00000377797 WASHC2CQ9Y4E1 1318 aa19.32■□□□□ 0.68
TCOF1-202ENST00000377797 EHBP1L1Q8N3D4 1523 aa19.31■□□□□ 0.68
TCOF1-202ENST00000377797 CCDC136Q96JN2 1154 aa19.31■□□□□ 0.68
TCOF1-202ENST00000377797 TROQ12816 1431 aaPredicted RBP19.31■□□□□ 0.68
TCOF1-202ENST00000377797 CCDC144AA2RUR9 1427 aa19.3■□□□□ 0.68
TCOF1-202ENST00000377797 GRIN2AQ12879 1464 aa19.29■□□□□ 0.68
TCOF1-202ENST00000377797 SAFB2Q14151 953 aaKnown RBP eCLIP19.28■□□□□ 0.68
TCOF1-202ENST00000377797 ANKRD50Q9ULJ7 1429 aa19.28■□□□□ 0.68
TCOF1-202ENST00000377797 PCF11O94913 1555 aaKnown RBP19.28■□□□□ 0.68
TCOF1-202ENST00000377797 EPRSP07814 1512 aaKnown RBP19.28■□□□□ 0.68
TCOF1-202ENST00000377797 SUPT16HQ9Y5B9 1047 aaKnown RBP19.28■□□□□ 0.68
TCOF1-202ENST00000377797 MIA2Q96PC5 1412 aa19.27■□□□□ 0.68
TCOF1-202ENST00000377797 HECW1Q76N89 1606 aa19.27■□□□□ 0.68
TCOF1-202ENST00000377797 CFAP53Q96M91 514 aa19.27■□□□□ 0.68
TCOF1-202ENST00000377797 CDK13Q14004 1512 aaKnown RBP19.27■□□□□ 0.68
TCOF1-202ENST00000377797 TNNT2P45379 298 aaPredicted RBP19.26■□□□□ 0.67
TCOF1-202ENST00000377797 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.26■□□□□ 0.67
TCOF1-202ENST00000377797 MAGI1Q96QZ7 1491 aaPredicted RBP19.26■□□□□ 0.67
TCOF1-202ENST00000377797 STK26Q9P289 416 aa19.25■□□□□ 0.67
TCOF1-202ENST00000377797 AFAP1Q8N556 730 aa19.24■□□□□ 0.67
TCOF1-202ENST00000377797 PPM1GO15355 546 aaPredicted RBP19.23■□□□□ 0.67
TCOF1-202ENST00000377797 C14orf37Q86TY3 774 aa19.23■□□□□ 0.67
TCOF1-202ENST00000377797 ST20-MTHFSA0A0A6YYL1 179 aa19.22■□□□□ 0.67
TCOF1-202ENST00000377797 SRPK2P78362 688 aaKnown RBP19.21■□□□□ 0.67
TCOF1-202ENST00000377797 HDGFP51858 240 aaKnown RBP19.21■□□□□ 0.67
TCOF1-202ENST00000377797 HFM1A2PYH4 1435 aa19.2■□□□□ 0.66
TCOF1-202ENST00000377797 PLB1Q6P1J6 1458 aa19.2■□□□□ 0.66
TCOF1-202ENST00000377797 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.19■□□□□ 0.66
TCOF1-202ENST00000377797 ARHGAP5Q13017 1502 aa19.19■□□□□ 0.66
TCOF1-202ENST00000377797 MAP3K1Q13233 1512 aa19.19■□□□□ 0.66
TCOF1-202ENST00000377797 PLEKHG5O94827 1062 aa19.19■□□□□ 0.66
TCOF1-202ENST00000377797 NUTM2DQ5VT03 806 aaPredicted RBP19.19■□□□□ 0.66
TCOF1-202ENST00000377797 NEUROD2Q15784 382 aa19.18■□□□□ 0.66
TCOF1-202ENST00000377797 SUPT6HQ7KZ85 1726 aaKnown RBP19.17■□□□□ 0.66
TCOF1-202ENST00000377797 FAM69CQ0P6D2 419 aa19.16■□□□□ 0.66
TCOF1-202ENST00000377797 KTN1Q86UP2 1357 aaKnown RBP19.16■□□□□ 0.66
TCOF1-202ENST00000377797 RTL5Q5HYW3 569 aaPredicted RBP19.15■□□□□ 0.66
TCOF1-202ENST00000377797 USP47Q96K76 1375 aa19.13■□□□□ 0.65
TCOF1-202ENST00000377797 NPM2Q86SE8 214 aaKnown RBP19.13■□□□□ 0.65
TCOF1-202ENST00000377797 C9orf84Q5VXU9 1444 aa19.13■□□□□ 0.65
TCOF1-202ENST00000377797 ANP32AP39687 249 aaKnown RBP19.12■□□□□ 0.65
TCOF1-202ENST00000377797 NUDCQ9Y266 331 aa19.12■□□□□ 0.65
TCOF1-202ENST00000377797 MORC1Q86VD1 984 aa19.12■□□□□ 0.65
TCOF1-202ENST00000377797 DAPK1P53355 1430 aa19.12■□□□□ 0.65
TCOF1-202ENST00000377797 ZBTB7CA1YPR0 619 aa19.11■□□□□ 0.65
TCOF1-202ENST00000377797 NAIPQ13075 1403 aa19.11■□□□□ 0.65
TCOF1-202ENST00000377797 RALBP1Q15311 655 aa19.11■□□□□ 0.65
TCOF1-202ENST00000377797 EIF3AQ14152 1382 aaKnown RBP19.1■□□□□ 0.65
TCOF1-202ENST00000377797 TRAK1Q9UPV9 953 aa19.1■□□□□ 0.65
TCOF1-202ENST00000377797 U2SURPO15042 1029 aaKnown RBP19.08■□□□□ 0.65
TCOF1-202ENST00000377797 MAPK8IP3Q9UPT6 1336 aa19.06■□□□□ 0.64
TCOF1-202ENST00000377797 ARHGEF11O15085 1522 aa19.06■□□□□ 0.64
TCOF1-202ENST00000377797 PRKRIP1Q9H875 184 aaPredicted RBP19.04■□□□□ 0.64
TCOF1-202ENST00000377797 VGFO15240 615 aaPredicted RBP19.03■□□□□ 0.64
TCOF1-202ENST00000377797 PLEKHH2Q8IVE3 1493 aa19.02■□□□□ 0.64
TCOF1-202ENST00000377797 KIF21AQ7Z4S6 1674 aa19.02■□□□□ 0.64
TCOF1-202ENST00000377797 NLRP13Q86W25 1043 aa19.02■□□□□ 0.64
TCOF1-202ENST00000377797 HDGFL2Q7Z4V5 671 aaPredicted RBP19.01■□□□□ 0.63
TCOF1-202ENST00000377797 PANK3Q9H999 370 aa19.01■□□□□ 0.63
TCOF1-202ENST00000377797 SCAPERQ9BY12 1400 aa19.01■□□□□ 0.63
TCOF1-202ENST00000377797 ROCK1Q13464 1354 aa19■□□□□ 0.63
TCOF1-202ENST00000377797 LMOD2Q6P5Q4 547 aa19■□□□□ 0.63
TCOF1-202ENST00000377797 KIAA1107Q9UPP5 1409 aa19■□□□□ 0.63
TCOF1-202ENST00000377797 PTPN23Q9H3S7 1636 aa18.99■□□□□ 0.63
TCOF1-202ENST00000377797 ABCC5O15440 1437 aa18.99■□□□□ 0.63
TCOF1-202ENST00000377797 SOX12O15370 315 aa18.98■□□□□ 0.63
TCOF1-202ENST00000377797 PPP4R2Q9NY27 417 aa18.98■□□□□ 0.63
TCOF1-202ENST00000377797 KIF7Q2M1P5 1343 aa18.98■□□□□ 0.63
TCOF1-202ENST00000377797 NBPF8Q3BBV2 869 aa18.98■□□□□ 0.63
TCOF1-202ENST00000377797 LAS1LQ9Y4W2 734 aaKnown RBP18.97■□□□□ 0.63
TCOF1-202ENST00000377797 CCDC7Q96M83 1385 aa18.97■□□□□ 0.63
TCOF1-202ENST00000377797 CAMSAP2Q08AD1 1489 aa18.96■□□□□ 0.63
TCOF1-202ENST00000377797 STAC3Q96MF2 364 aa18.95■□□□□ 0.62
TCOF1-202ENST00000377797 WASHC2AQ641Q2 1341 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms