RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 MAGI3Q5TCQ9 1506 aa6.13□□□□□ -1.43
MCF2-203ENST00000370576 CARMIL1Q5VZK9 1371 aa6.13□□□□□ -1.43
MCF2-203ENST00000370576 CCDC18Q5T9S5 1454 aa6.13□□□□□ -1.43
MCF2-203ENST00000370576 EHBP1L1Q8N3D4 1523 aa6.13□□□□□ -1.43
MCF2-203ENST00000370576 SUPT6HQ7KZ85 1726 aaKnown RBP6.12□□□□□ -1.43
MCF2-203ENST00000370576 IFNLR1Q8IU57 520 aaPredicted RBP6.12□□□□□ -1.43
MCF2-203ENST00000370576 TRIM41Q8WV44 630 aa6.11□□□□□ -1.43
MCF2-203ENST00000370576 SENP3Q9H4L4 574 aaPredicted RBP6.11□□□□□ -1.43
MCF2-203ENST00000370576 PAXIP1Q6ZW49 1069 aaPredicted RBP6.11□□□□□ -1.43
MCF2-203ENST00000370576 PREX2Q70Z35 1606 aa6.11□□□□□ -1.43
MCF2-203ENST00000370576 AKNAQ7Z591 1439 aa6.09□□□□□ -1.43
MCF2-203ENST00000370576 CDC42BPBQ9Y5S2 1711 aa6.09□□□□□ -1.43
MCF2-203ENST00000370576 ARHGEF5Q12774 1597 aa6.09□□□□□ -1.43
MCF2-203ENST00000370576 ABCA9Q8IUA7 1624 aa6.09□□□□□ -1.44
MCF2-203ENST00000370576 LRRC9Q6ZRR7 1453 aa6.08□□□□□ -1.44
MCF2-203ENST00000370576 DNMT1P26358 1616 aaKnown RBP6.08□□□□□ -1.44
MCF2-203ENST00000370576 CCDC9Q9Y3X0 531 aaKnown RBP6.08□□□□□ -1.44
MCF2-203ENST00000370576 ABCC10Q5T3U5 1492 aa6.07□□□□□ -1.44
MCF2-203ENST00000370576 BCL11AQ9H165 835 aa6.07□□□□□ -1.44
MCF2-203ENST00000370576 ZCCHC11Q5TAX3 1644 aaKnown RBP6.07□□□□□ -1.44
MCF2-203ENST00000370576 HSP90B1P14625 803 aaKnown RBP6.06□□□□□ -1.44
MCF2-203ENST00000370576 KDM5DQ9BY66 1539 aa6.06□□□□□ -1.44
MCF2-203ENST00000370576 DEPDC5O75140 1603 aa6.06□□□□□ -1.44
MCF2-203ENST00000370576 ZMYND15Q9H091 742 aa6.06□□□□□ -1.44
MCF2-203ENST00000370576 PLXNC1O60486 1568 aa6.06□□□□□ -1.44
MCF2-203ENST00000370576 NEURL4Q96JN8 1562 aa6.06□□□□□ -1.44
MCF2-203ENST00000370576 NUP153P49790 1475 aaKnown RBP6.06□□□□□ -1.44
MCF2-203ENST00000370576 FMN1Q68DA7 1419 aa6.06□□□□□ -1.44
MCF2-203ENST00000370576 GLI2P10070 1586 aa6.06□□□□□ -1.44
MCF2-203ENST00000370576 ABCC2Q92887 1545 aa6.05□□□□□ -1.44
MCF2-203ENST00000370576 CDK11AQ9UQ88 783 aaPredicted RBP6.05□□□□□ -1.44
MCF2-203ENST00000370576 BRD2P25440 801 aaKnown RBP6.05□□□□□ -1.44
MCF2-203ENST00000370576 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.05□□□□□ -1.44
MCF2-203ENST00000370576 MAP3K4Q9Y6R4 1608 aa6.04□□□□□ -1.44
MCF2-203ENST00000370576 PPRC1Q5VV67 1664 aaKnown RBP6.04□□□□□ -1.44
MCF2-203ENST00000370576 MYO5CQ9NQX4 1742 aa6.04□□□□□ -1.44
MCF2-203ENST00000370576 EPRSP07814 1512 aaKnown RBP6.04□□□□□ -1.44
MCF2-203ENST00000370576 ADGRL2O95490 1459 aa6.03□□□□□ -1.44
MCF2-203ENST00000370576 SHANK2Q9UPX8 1470 aa6.03□□□□□ -1.44
MCF2-203ENST00000370576 NBR1Q14596 966 aa6.03□□□□□ -1.44
MCF2-203ENST00000370576 MAGI2Q86UL8 1455 aa6.02□□□□□ -1.44
MCF2-203ENST00000370576 UNC13BO14795 1591 aa6.02□□□□□ -1.45
MCF2-203ENST00000370576 PTPN23Q9H3S7 1636 aa6.02□□□□□ -1.45
MCF2-203ENST00000370576 WDR7Q9Y4E6 1490 aa6.02□□□□□ -1.45
MCF2-203ENST00000370576 POLR1AO95602 1720 aaPredicted RBP6.02□□□□□ -1.45
MCF2-203ENST00000370576 MAPKBP1O60336 1514 aa6.02□□□□□ -1.45
MCF2-203ENST00000370576 ERCC6Q03468 1493 aa6.02□□□□□ -1.45
MCF2-203ENST00000370576 EIF2AK4Q9P2K8 1649 aaKnown RBP6.02□□□□□ -1.45
MCF2-203ENST00000370576 FAM9AQ8IZU1 332 aaPredicted RBP6.01□□□□□ -1.45
MCF2-203ENST00000370576 DHX37Q8IY37 1157 aaKnown RBP6.01□□□□□ -1.45
MCF2-203ENST00000370576 CFAP74Q9C0B2 1584 aa6.01□□□□□ -1.45
MCF2-203ENST00000370576 ZNF692Q9BU19 519 aaPredicted RBP6.01□□□□□ -1.45
MCF2-203ENST00000370576 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.01□□□□□ -1.45
MCF2-203ENST00000370576 ERCC6L2Q5T890 1561 aa6□□□□□ -1.45
MCF2-203ENST00000370576 MIA2Q96PC5 1412 aa6□□□□□ -1.45
MCF2-203ENST00000370576 KIF14Q15058 1648 aa6□□□□□ -1.45
MCF2-203ENST00000370576 INO80Q9ULG1 1556 aaPredicted RBP6□□□□□ -1.45
MCF2-203ENST00000370576 VWDEQ8N2E2 1590 aa6□□□□□ -1.45
MCF2-203ENST00000370576 REREQ9P2R6 1566 aa6□□□□□ -1.45
MCF2-203ENST00000370576 SLC4A2P04920 1241 aa6□□□□□ -1.45
MCF2-203ENST00000370576 CFAP44Q96MT7 982 aa5.99□□□□□ -1.45
MCF2-203ENST00000370576 CDK11BP21127 795 aaKnown RBP5.98□□□□□ -1.45
MCF2-203ENST00000370576 RNF17Q9BXT8 1623 aaKnown RBP5.98□□□□□ -1.45
MCF2-203ENST00000370576 SPRYD3Q8NCJ5 442 aa5.98□□□□□ -1.45
MCF2-203ENST00000370576 TDRD9Q8NDG6 1382 aaKnown RBP5.98□□□□□ -1.45
MCF2-203ENST00000370576 SAMD9LQ8IVG5 1584 aa5.97□□□□□ -1.45
MCF2-203ENST00000370576 KDM5CP41229 1560 aa5.97□□□□□ -1.45
MCF2-203ENST00000370576 TTC37Q6PGP7 1564 aa5.97□□□□□ -1.45
MCF2-203ENST00000370576 KIF13AQ9H1H9 1805 aa5.97□□□□□ -1.45
MCF2-203ENST00000370576 RIMBP3CA6NJZ7 1639 aa5.97□□□□□ -1.45
MCF2-203ENST00000370576 RIMBP3BA6NNM3 1639 aa5.97□□□□□ -1.45
MCF2-203ENST00000370576 RIMBP3Q9UFD9 1639 aa5.97□□□□□ -1.45
MCF2-203ENST00000370576 IFT172Q9UG01 1749 aa5.96□□□□□ -1.45
MCF2-203ENST00000370576 HMGB1P09429 215 aaKnown RBP5.96□□□□□ -1.45
MCF2-203ENST00000370576 RSPH6AQ9H0K4 717 aa5.96□□□□□ -1.45
MCF2-203ENST00000370576 FAM135AQ9P2D6 1515 aa5.96□□□□□ -1.45
MCF2-203ENST00000370576 RICTORQ6R327 1708 aa5.96□□□□□ -1.46
MCF2-203ENST00000370576 VASPP50552 380 aaPredicted RBP5.96□□□□□ -1.46
MCF2-203ENST00000370576 TRAIPQ9BWF2 469 aa5.96□□□□□ -1.46
MCF2-203ENST00000370576 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.96□□□□□ -1.46
MCF2-203ENST00000370576 IGSF5Q9NSI5 407 aa5.95□□□□□ -1.46
MCF2-203ENST00000370576 IQGAP3Q86VI3 1631 aa5.95□□□□□ -1.46
MCF2-203ENST00000370576 DENND4BO75064 1496 aaPredicted RBP5.95□□□□□ -1.46
MCF2-203ENST00000370576 TAF7LQ5H9L4 462 aa5.95□□□□□ -1.46
MCF2-203ENST00000370576 LAMC1P11047 1609 aa5.95□□□□□ -1.46
MCF2-203ENST00000370576 ABCC1P33527 1531 aa5.95□□□□□ -1.46
MCF2-203ENST00000370576 ZMYM4Q5VZL5 1548 aa5.94□□□□□ -1.46
MCF2-203ENST00000370576 MROH1Q8NDA8 1641 aa5.94□□□□□ -1.46
MCF2-203ENST00000370576 ATP10BO94823 1461 aa5.94□□□□□ -1.46
MCF2-203ENST00000370576 NCOA2Q15596 1464 aa5.93□□□□□ -1.46
MCF2-203ENST00000370576 FRMPD1Q5SYB0 1578 aa5.93□□□□□ -1.46
MCF2-203ENST00000370576 MAPK8IP2Q13387 824 aaPredicted RBP5.93□□□□□ -1.46
MCF2-203ENST00000370576 ROCK1Q13464 1354 aa5.93□□□□□ -1.46
MCF2-203ENST00000370576 PTPRGP23470 1445 aa5.93□□□□□ -1.46
MCF2-203ENST00000370576 FHOD3Q2V2M9 1422 aa5.93□□□□□ -1.46
MCF2-203ENST00000370576 KDM5AP29375 1690 aaKnown RBP5.92□□□□□ -1.46
MCF2-203ENST00000370576 ZC3H13Q5T200 1668 aaKnown RBP5.92□□□□□ -1.46
MCF2-203ENST00000370576 TROQ12816 1431 aaPredicted RBP5.92□□□□□ -1.46
MCF2-203ENST00000370576 MYOM3Q5VTT5 1437 aa5.92□□□□□ -1.46
MCF2-203ENST00000370576 ZNF428Q96B54 188 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms