RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 WIZO95785 1651 aa20.33■□□□□ 0.84
COL17A1-202ENST00000369733 FMN1Q68DA7 1419 aa20.32■□□□□ 0.84
COL17A1-202ENST00000369733 U2SURPO15042 1029 aaKnown RBP20.31■□□□□ 0.84
COL17A1-202ENST00000369733 L3MBTL2Q969R5 705 aa20.31■□□□□ 0.84
COL17A1-202ENST00000369733 ZRSR1Q15695 479 aaKnown RBP20.31■□□□□ 0.84
COL17A1-202ENST00000369733 RAPGEF2Q9Y4G8 1499 aa20.29■□□□□ 0.84
COL17A1-202ENST00000369733 GOLGA6L3A6NEY3 463 aa20.29■□□□□ 0.84
COL17A1-202ENST00000369733 EIF4G1Q04637 1599 aaKnown RBP20.28■□□□□ 0.84
COL17A1-202ENST00000369733 GBP4Q96PP9 640 aa20.28■□□□□ 0.84
COL17A1-202ENST00000369733 PDE3BQ13370 1112 aa20.26■□□□□ 0.83
COL17A1-202ENST00000369733 TOP2AP11388 1531 aaKnown RBP20.26■□□□□ 0.83
COL17A1-202ENST00000369733 PDE4AP27815 886 aa20.26■□□□□ 0.83
COL17A1-202ENST00000369733 PLPPR3Q6T4P5 718 aa20.26■□□□□ 0.83
COL17A1-202ENST00000369733 ZBED9Q6R2W3 1325 aa20.26■□□□□ 0.83
COL17A1-202ENST00000369733 ROCK2O75116 1388 aaKnown RBP20.26■□□□□ 0.83
COL17A1-202ENST00000369733 PTMSP20962 102 aa20.24■□□□□ 0.83
COL17A1-202ENST00000369733 RWDD1Q9H446 243 aaPredicted RBP20.24■□□□□ 0.83
COL17A1-202ENST00000369733 MORC1Q86VD1 984 aa20.24■□□□□ 0.83
COL17A1-202ENST00000369733 CHAF1AQ13111 956 aaPredicted RBP20.23■□□□□ 0.83
COL17A1-202ENST00000369733 RUSC2Q8N2Y8 1516 aa20.23■□□□□ 0.83
COL17A1-202ENST00000369733 PRKRIP1Q9H875 184 aaPredicted RBP20.23■□□□□ 0.83
COL17A1-202ENST00000369733 GSE1Q14687 1217 aa20.22■□□□□ 0.83
COL17A1-202ENST00000369733 NLRP13Q86W25 1043 aa20.21■□□□□ 0.83
COL17A1-202ENST00000369733 PMFBP1Q8TBY8 1022 aa20.2■□□□□ 0.82
COL17A1-202ENST00000369733 GOLGA2Q08379 1002 aa20.19■□□□□ 0.82
COL17A1-202ENST00000369733 EXOC6Q8TAG9 804 aa20.18■□□□□ 0.82
COL17A1-202ENST00000369733 RSPH6AQ9H0K4 717 aa20.18■□□□□ 0.82
COL17A1-202ENST00000369733 SLC4A3P48751 1232 aa20.17■□□□□ 0.82
COL17A1-202ENST00000369733 CFAP44Q96MT7 982 aa20.17■□□□□ 0.82
COL17A1-202ENST00000369733 MFAP1P55081 439 aaKnown RBP20.17■□□□□ 0.82
COL17A1-202ENST00000369733 ZBTB7CA1YPR0 619 aa20.17■□□□□ 0.82
COL17A1-202ENST00000369733 CDK11BP21127 795 aaKnown RBP20.17■□□□□ 0.82
COL17A1-202ENST00000369733 RRP1P56182 461 aaKnown RBP20.16■□□□□ 0.82
COL17A1-202ENST00000369733 POGKQ9P215 609 aa20.16■□□□□ 0.82
COL17A1-202ENST00000369733 GOLGA6L6A8MZA4 724 aa20.16■□□□□ 0.82
COL17A1-202ENST00000369733 KIF15Q9NS87 1388 aa20.15■□□□□ 0.82
COL17A1-202ENST00000369733 MCCP23508 829 aa20.14■□□□□ 0.82
COL17A1-202ENST00000369733 C14orf37Q86TY3 774 aa20.14■□□□□ 0.81
COL17A1-202ENST00000369733 ITPRIPQ8IWB1 547 aa20.14■□□□□ 0.81
COL17A1-202ENST00000369733 MYBBP1AQ9BQG0 1328 aaKnown RBP20.14■□□□□ 0.81
COL17A1-202ENST00000369733 IPO8O15397 1037 aaKnown RBP20.14■□□□□ 0.81
COL17A1-202ENST00000369733 FAM161AQ3B820 660 aa20.14■□□□□ 0.81
COL17A1-202ENST00000369733 NUP155O75694 1391 aa20.13■□□□□ 0.81
COL17A1-202ENST00000369733 CENPQQ7L2Z9 268 aaPredicted RBP20.13■□□□□ 0.81
COL17A1-202ENST00000369733 ARID3AQ99856 593 aa20.12■□□□□ 0.81
COL17A1-202ENST00000369733 GOLGA6L4A6NEF3 574 aa20.12■□□□□ 0.81
COL17A1-202ENST00000369733 FHOD3Q2V2M9 1422 aa20.11■□□□□ 0.81
COL17A1-202ENST00000369733 PLIN1O60240 522 aa20.11■□□□□ 0.81
COL17A1-202ENST00000369733 PHLDB1Q86UU1 1377 aa20.1■□□□□ 0.81
COL17A1-202ENST00000369733 KCNJ4P48050 445 aa20.09■□□□□ 0.81
COL17A1-202ENST00000369733 OS9Q13438 667 aaPredicted RBP20.09■□□□□ 0.81
COL17A1-202ENST00000369733 CCDC146Q8IYE0 955 aa20.09■□□□□ 0.81
COL17A1-202ENST00000369733 KIAA2012Q0VF49 1180 aa20.08■□□□□ 0.81
COL17A1-202ENST00000369733 NRDCO43847 1150 aa20.08■□□□□ 0.8
COL17A1-202ENST00000369733 DRC7Q8IY82 874 aa20.08■□□□□ 0.8
COL17A1-202ENST00000369733 CENPJQ9HC77 1338 aaPredicted RBP20.08■□□□□ 0.8
COL17A1-202ENST00000369733 HSP90AA2PQ14568 343 aaPredicted RBP20.07■□□□□ 0.8
COL17A1-202ENST00000369733 CRBNQ96SW2 442 aa20.07■□□□□ 0.8
COL17A1-202ENST00000369733 ANKRD30AQ9BXX3 1397 aa20.07■□□□□ 0.8
COL17A1-202ENST00000369733 PLEKHG5O94827 1062 aa20.07■□□□□ 0.8
COL17A1-202ENST00000369733 U2AF1L5P0DN76 240 aaPredicted RBP20.06■□□□□ 0.8
COL17A1-202ENST00000369733 U2AF1Q01081 240 aaKnown RBP eCLIP20.06■□□□□ 0.8
COL17A1-202ENST00000369733 FGD1P98174 961 aa20.05■□□□□ 0.8
COL17A1-202ENST00000369733 KANK1Q14678 1352 aa20.05■□□□□ 0.8
COL17A1-202ENST00000369733 APBB1O00213 710 aa20.05■□□□□ 0.8
COL17A1-202ENST00000369733 CLUAP1Q96AJ1 413 aa20.05■□□□□ 0.8
COL17A1-202ENST00000369733 CCDC18Q5T9S5 1454 aa20.05■□□□□ 0.8
COL17A1-202ENST00000369733 SRPK2P78362 688 aaKnown RBP20.04■□□□□ 0.8
COL17A1-202ENST00000369733 SMARCA2P51531 1590 aa20.03■□□□□ 0.8
COL17A1-202ENST00000369733 DDX11L8A8MPP1 907 aa20.03■□□□□ 0.8
COL17A1-202ENST00000369733 SMC4Q9NTJ3 1288 aa20.02■□□□□ 0.8
COL17A1-202ENST00000369733 FOXD4L1Q9NU39 408 aa20.02■□□□□ 0.8
COL17A1-202ENST00000369733 ST20-MTHFSA0A0A6YYL1 179 aa20.02■□□□□ 0.79
COL17A1-202ENST00000369733 CALD1Q05682 793 aaKnown RBP20.02■□□□□ 0.79
COL17A1-202ENST00000369733 SYAP1Q96A49 352 aaPredicted RBP20.01■□□□□ 0.79
COL17A1-202ENST00000369733 SAFB2Q14151 953 aaKnown RBP eCLIP19.99■□□□□ 0.79
COL17A1-202ENST00000369733 HAP1P54257 671 aaPredicted RBP19.98■□□□□ 0.79
COL17A1-202ENST00000369733 NAP1L2Q9ULW6 460 aaPredicted RBP19.98■□□□□ 0.79
COL17A1-202ENST00000369733 TAOK2Q9UL54 1235 aa19.98■□□□□ 0.79
COL17A1-202ENST00000369733 USP47Q96K76 1375 aa19.97■□□□□ 0.79
COL17A1-202ENST00000369733 PANK3Q9H999 370 aa19.96■□□□□ 0.79
COL17A1-202ENST00000369733 EIF3AQ14152 1382 aaKnown RBP19.96■□□□□ 0.79
COL17A1-202ENST00000369733 AMER1Q5JTC6 1135 aaPredicted RBP19.95■□□□□ 0.78
COL17A1-202ENST00000369733 VSIG10Q8N0Z9 540 aa19.95■□□□□ 0.78
COL17A1-202ENST00000369733 CNTLNQ9NXG0 1405 aa19.94■□□□□ 0.78
COL17A1-202ENST00000369733 CCDC7Q96M83 1385 aa19.93■□□□□ 0.78
COL17A1-202ENST00000369733 KIAA1211Q6ZU35 1233 aa19.92■□□□□ 0.78
COL17A1-202ENST00000369733 NFKBIBQ15653 356 aa19.91■□□□□ 0.78
COL17A1-202ENST00000369733 KIF21BO75037 1637 aa19.91■□□□□ 0.78
COL17A1-202ENST00000369733 TDRD9Q8NDG6 1382 aaKnown RBP19.91■□□□□ 0.78
COL17A1-202ENST00000369733 HDGFL2Q7Z4V5 671 aaPredicted RBP19.89■□□□□ 0.78
COL17A1-202ENST00000369733 CGNL1Q0VF96 1302 aa19.89■□□□□ 0.77
COL17A1-202ENST00000369733 E9PSI1 815 aa19.89■□□□□ 0.77
COL17A1-202ENST00000369733 SKOR2Q2VWA4 1001 aaPredicted RBP19.89■□□□□ 0.77
COL17A1-202ENST00000369733 KIF7Q2M1P5 1343 aa19.89■□□□□ 0.77
COL17A1-202ENST00000369733 COG6Q9Y2V7 657 aa19.88■□□□□ 0.77
COL17A1-202ENST00000369733 RRP7AQ9Y3A4 280 aaKnown RBP19.87■□□□□ 0.77
COL17A1-202ENST00000369733 DDX49Q9Y6V7 483 aaKnown RBP19.87■□□□□ 0.77
COL17A1-202ENST00000369733 STK26Q9P289 416 aa19.87■□□□□ 0.77
COL17A1-202ENST00000369733 RTF1Q92541 710 aaKnown RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms