RNA–Protein interactions for RNA: ENST00000364738.1

RNU4-42P-201, Transcript of RNA, U4 small nuclear 42, pseudogene, humanhuman

BASIC

Gene RNU4-42P, Length 142 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-42P-201ENST00000364738 HS6ST3Q8IZP7 471 aa7.73□□□□□ -1.17
RNU4-42P-201ENST00000364738 HOXB1P14653 301 aaPredicted RBP7.72□□□□□ -1.17
RNU4-42P-201ENST00000364738 HS3ST6Q96QI5 342 aa7.72□□□□□ -1.17
RNU4-42P-201ENST00000364738 CHGAP10645 457 aaKnown RBP7.7□□□□□ -1.18
RNU4-42P-201ENST00000364738 POTEB3A0JP26 581 aa7.69□□□□□ -1.18
RNU4-42P-201ENST00000364738 POTEBQ6S5H4 581 aa7.69□□□□□ -1.18
RNU4-42P-201ENST00000364738 ZSWIM6Q9HCJ5 1215 aa7.69□□□□□ -1.18
RNU4-42P-201ENST00000364738 ERBB3P21860 1342 aa7.68□□□□□ -1.18
RNU4-42P-201ENST00000364738 C2orf72A6NCS6 295 aa7.67□□□□□ -1.18
RNU4-42P-201ENST00000364738 PPP1R37O75864 691 aa7.67□□□□□ -1.18
RNU4-42P-201ENST00000364738 KIF3CO14782 793 aa7.66□□□□□ -1.18
RNU4-42P-201ENST00000364738 TMC2Q8TDI7 906 aa7.66□□□□□ -1.18
RNU4-42P-201ENST00000364738 GPR153Q6NV75 609 aa7.65□□□□□ -1.18
RNU4-42P-201ENST00000364738 VARS2Q5ST30 1063 aaKnown RBP7.64□□□□□ -1.19
RNU4-42P-201ENST00000364738 KRTAP3-3Q9BYR6 98 aa7.64□□□□□ -1.19
RNU4-42P-201ENST00000364738 KRTAP3-2Q9BYR7 98 aa7.64□□□□□ -1.19
RNU4-42P-201ENST00000364738 ARSIQ5FYB1 569 aa7.63□□□□□ -1.19
RNU4-42P-201ENST00000364738 SPNS2Q8IVW8 549 aa7.63□□□□□ -1.19
RNU4-42P-201ENST00000364738 NKX1-1Q15270 411 aaPredicted RBP7.61□□□□□ -1.19
RNU4-42P-201ENST00000364738 MMRN1Q13201 1228 aa7.6□□□□□ -1.19
RNU4-42P-201ENST00000364738 KHSRPQ92945 711 aaKnown RBP eCLIP7.6□□□□□ -1.19
RNU4-42P-201ENST00000364738 DNAJC5Q9H3Z4 198 aa7.6□□□□□ -1.19
RNU4-42P-201ENST00000364738 DCAF8L2P0C7V8 631 aa7.59□□□□□ -1.19
RNU4-42P-201ENST00000364738 RYDENQ9NUL5 291 aaKnown RBP7.59□□□□□ -1.19
RNU4-42P-201ENST00000364738 ZNF316A6NFI3 1004 aaPredicted RBP7.56□□□□□ -1.2
RNU4-42P-201ENST00000364738 SLC34A2O95436 690 aa7.56□□□□□ -1.2
RNU4-42P-201ENST00000364738 NUDT7P0C024 238 aa7.56□□□□□ -1.2
RNU4-42P-201ENST00000364738 PCDHGA4Q9Y5G9 962 aa7.56□□□□□ -1.2
RNU4-42P-201ENST00000364738 ZNF687Q8N1G0 1237 aa7.55□□□□□ -1.2
RNU4-42P-201ENST00000364738 GPHNQ9NQX3 736 aaPredicted RBP7.55□□□□□ -1.2
RNU4-42P-201ENST00000364738 FOXK1P85037 733 aa7.53□□□□□ -1.2
RNU4-42P-201ENST00000364738 PLPP6Q8IY26 295 aa7.53□□□□□ -1.2
RNU4-42P-201ENST00000364738 DSG2Q14126 1118 aa7.52□□□□□ -1.21
RNU4-42P-201ENST00000364738 LHX6Q9UPM6 363 aa7.51□□□□□ -1.21
RNU4-42P-201ENST00000364738 GTPBP6O43824 516 aaPredicted RBP7.49□□□□□ -1.21
RNU4-42P-201ENST00000364738 PTCD2Q8WV60 388 aaKnown RBP7.49□□□□□ -1.21
RNU4-42P-201ENST00000364738 CRISPLD2Q9H0B8 497 aa7.48□□□□□ -1.21
RNU4-42P-201ENST00000364738 ANKRD13DQ6ZTN6 518 aa7.47□□□□□ -1.21
RNU4-42P-201ENST00000364738 PSDA5PKW4 1024 aaPredicted RBP7.46□□□□□ -1.22
RNU4-42P-201ENST00000364738 PBX2P40425 430 aa7.46□□□□□ -1.22
RNU4-42P-201ENST00000364738 LSM11P83369 360 aaKnown RBP eCLIP7.46□□□□□ -1.22
RNU4-42P-201ENST00000364738 PPP1R15BQ5SWA1 713 aa7.46□□□□□ -1.22
RNU4-42P-201ENST00000364738 TBC1D12O60347 775 aa7.45□□□□□ -1.22
RNU4-42P-201ENST00000364738 NCKAP5LQ9HCH0 1330 aa7.45□□□□□ -1.22
RNU4-42P-201ENST00000364738 KDM4FA0A1W2PPD8 638 aa7.44□□□□□ -1.22
RNU4-42P-201ENST00000364738 PDE4AP27815 886 aa7.44□□□□□ -1.22
RNU4-42P-201ENST00000364738 UPF1Q92900 1129 aaKnown RBP eCLIP7.44□□□□□ -1.22
RNU4-42P-201ENST00000364738 RNF166Q96A37 237 aaPredicted RBP7.44□□□□□ -1.22
RNU4-42P-201ENST00000364738 MYT1LQ9UL68 1186 aa7.44□□□□□ -1.22
RNU4-42P-201ENST00000364738 PTGER2P43116 358 aa7.43□□□□□ -1.22
RNU4-42P-201ENST00000364738 AXIN2Q9Y2T1 843 aa7.43□□□□□ -1.22
RNU4-42P-201ENST00000364738 POTEEQ6S8J3 1075 aa7.42□□□□□ -1.22
RNU4-42P-201ENST00000364738 OXER1Q8TDS5 423 aa7.42□□□□□ -1.22
RNU4-42P-201ENST00000364738 LARP6Q9BRS8 491 aaKnown RBP7.41□□□□□ -1.22
RNU4-42P-201ENST00000364738 AMER1Q5JTC6 1135 aaPredicted RBP7.4□□□□□ -1.22
RNU4-42P-201ENST00000364738 PPP4R3BQ5MIZ7 849 aa7.4□□□□□ -1.22
RNU4-42P-201ENST00000364738 DDX27Q96GQ7 796 aaKnown RBP7.4□□□□□ -1.22
RNU4-42P-201ENST00000364738 ARHGAP33O14559 1287 aa7.39□□□□□ -1.23
RNU4-42P-201ENST00000364738 MFSD10Q14728 455 aa7.37□□□□□ -1.23
RNU4-42P-201ENST00000364738 CADPS2Q86UW7 1296 aa7.37□□□□□ -1.23
RNU4-42P-201ENST00000364738 KCNH8Q96L42 1107 aa7.36□□□□□ -1.23
RNU4-42P-201ENST00000364738 PSEN2P49810 448 aa7.35□□□□□ -1.23
RNU4-42P-201ENST00000364738 ADGRD1Q6QNK2 874 aa7.35□□□□□ -1.23
RNU4-42P-201ENST00000364738 ZNF454Q8N9F8 522 aa7.35□□□□□ -1.23
RNU4-42P-201ENST00000364738 BBXQ8WY36 941 aaPredicted RBP7.35□□□□□ -1.23
RNU4-42P-201ENST00000364738 KCNK17Q96T54 332 aa7.35□□□□□ -1.23
RNU4-42P-201ENST00000364738 RTN4Q9NQC3 1192 aaKnown RBP7.35□□□□□ -1.23
RNU4-42P-201ENST00000364738 DMRTA1Q5VZB9 504 aa7.34□□□□□ -1.23
RNU4-42P-201ENST00000364738 EVI5O60447 810 aa7.32□□□□□ -1.24
RNU4-42P-201ENST00000364738 MAP3K9P80192 1104 aa7.32□□□□□ -1.24
RNU4-42P-201ENST00000364738 TK2O00142 265 aa7.31□□□□□ -1.24
RNU4-42P-201ENST00000364738 FOSBP53539 338 aa7.31□□□□□ -1.24
RNU4-42P-201ENST00000364738 JPH4Q96JJ6 628 aa7.31□□□□□ -1.24
RNU4-42P-201ENST00000364738 EMILIN3Q9NT22 766 aa7.31□□□□□ -1.24
RNU4-42P-201ENST00000364738 BCL2L12Q9HB09 334 aa7.3□□□□□ -1.24
RNU4-42P-201ENST00000364738 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.3□□□□□ -1.24
RNU4-42P-201ENST00000364738 SPRYD3Q8NCJ5 442 aa7.29□□□□□ -1.24
RNU4-42P-201ENST00000364738 ANO8Q9HCE9 1232 aaPredicted RBP7.29□□□□□ -1.24
RNU4-42P-201ENST00000364738 PTPREP23469 700 aa7.28□□□□□ -1.24
RNU4-42P-201ENST00000364738 HRO43593 1189 aa7.27□□□□□ -1.25
RNU4-42P-201ENST00000364738 ZDHHC16Q969W1 377 aa7.27□□□□□ -1.25
RNU4-42P-201ENST00000364738 STAC3Q96MF2 364 aa7.27□□□□□ -1.25
RNU4-42P-201ENST00000364738 ADAM33Q9BZ11 813 aa7.26□□□□□ -1.25
RNU4-42P-201ENST00000364738 VPS9D1Q9Y2B5 631 aa7.26□□□□□ -1.25
RNU4-42P-201ENST00000364738 DPYSL4O14531 572 aa7.25□□□□□ -1.25
RNU4-42P-201ENST00000364738 CAMK2BQ13554 666 aa7.25□□□□□ -1.25
RNU4-42P-201ENST00000364738 HCSTQ9UBK5 93 aa7.24□□□□□ -1.25
RNU4-42P-201ENST00000364738 PAXIP1Q6ZW49 1069 aaPredicted RBP7.23□□□□□ -1.25
RNU4-42P-201ENST00000364738 KCTD12Q96CX2 325 aaKnown RBP7.23□□□□□ -1.25
RNU4-42P-201ENST00000364738 CFAP44Q96MT7 982 aa7.23□□□□□ -1.25
RNU4-42P-201ENST00000364738 SLC4A5Q9BY07 1137 aa7.23□□□□□ -1.25
RNU4-42P-201ENST00000364738 PCDHGA10Q9Y5H3 936 aa7.23□□□□□ -1.25
RNU4-42P-201ENST00000364738 ZBED2Q9BTP6 218 aa7.22□□□□□ -1.25
RNU4-42P-201ENST00000364738 TYW1BQ6NUM6 668 aa7.21□□□□□ -1.26
RNU4-42P-201ENST00000364738 FBXW7Q969H0 707 aa7.21□□□□□ -1.26
RNU4-42P-201ENST00000364738 PPP1R3GB7ZBB8 358 aa7.2□□□□□ -1.26
RNU4-42P-201ENST00000364738 PHF14O94880 888 aa7.2□□□□□ -1.26
RNU4-42P-201ENST00000364738 MRPL50Q8N5N7 158 aaKnown RBP7.18□□□□□ -1.26
RNU4-42P-201ENST00000364738 NBPF3Q9H094 633 aa7.18□□□□□ -1.26
RNU4-42P-201ENST00000364738 GOLGA8CPA6NN73 597 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms