RNA–Protein interactions for RNA: ENST00000364351.1

RNU4-40P-201, Transcript of RNA, U4 small nuclear 40, pseudogene, humanhuman

BASIC

Gene RNU4-40P, Length 143 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-40P-201ENST00000364351 POTEB3A0JP26 581 aa15□□□□□ -0.01
RNU4-40P-201ENST00000364351 POTEBQ6S5H4 581 aa15□□□□□ -0.01
RNU4-40P-201ENST00000364351 HOXB1P14653 301 aaPredicted RBP14.99□□□□□ -0.01
RNU4-40P-201ENST00000364351 RIMBP2O15034 1052 aa14.98□□□□□ -0.01
RNU4-40P-201ENST00000364351 SPNS2Q8IVW8 549 aa14.92□□□□□ -0.02
RNU4-40P-201ENST00000364351 ERBB3P21860 1342 aa14.92□□□□□ -0.02
RNU4-40P-201ENST00000364351 KRTAP3-3Q9BYR6 98 aa14.87□□□□□ -0.03
RNU4-40P-201ENST00000364351 KRTAP3-2Q9BYR7 98 aa14.87□□□□□ -0.03
RNU4-40P-201ENST00000364351 ZSWIM6Q9HCJ5 1215 aa14.87□□□□□ -0.03
RNU4-40P-201ENST00000364351 MMRN1Q13201 1228 aa14.86□□□□□ -0.03
RNU4-40P-201ENST00000364351 GPR153Q6NV75 609 aa14.84□□□□□ -0.03
RNU4-40P-201ENST00000364351 C2orf72A6NCS6 295 aa14.82□□□□□ -0.04
RNU4-40P-201ENST00000364351 VARS2Q5ST30 1063 aaKnown RBP14.82□□□□□ -0.04
RNU4-40P-201ENST00000364351 PPP1R37O75864 691 aa14.81□□□□□ -0.04
RNU4-40P-201ENST00000364351 ARSIQ5FYB1 569 aa14.81□□□□□ -0.04
RNU4-40P-201ENST00000364351 KIF3CO14782 793 aa14.79□□□□□ -0.04
RNU4-40P-201ENST00000364351 HS6ST3Q8IZP7 471 aa14.77□□□□□ -0.05
RNU4-40P-201ENST00000364351 CHGAP10645 457 aaKnown RBP14.76□□□□□ -0.05
RNU4-40P-201ENST00000364351 TMC2Q8TDI7 906 aa14.75□□□□□ -0.05
RNU4-40P-201ENST00000364351 KHSRPQ92945 711 aaKnown RBP eCLIP14.75□□□□□ -0.05
RNU4-40P-201ENST00000364351 ZNF687Q8N1G0 1237 aa14.69□□□□□ -0.06
RNU4-40P-201ENST00000364351 ZNF316A6NFI3 1004 aaPredicted RBP14.66□□□□□ -0.06
RNU4-40P-201ENST00000364351 NUDT7P0C024 238 aa14.64□□□□□ -0.07
RNU4-40P-201ENST00000364351 PCDHGA4Q9Y5G9 962 aa14.62□□□□□ -0.07
RNU4-40P-201ENST00000364351 SLC34A2O95436 690 aa14.61□□□□□ -0.07
RNU4-40P-201ENST00000364351 NKX1-1Q15270 411 aaPredicted RBP14.59□□□□□ -0.07
RNU4-40P-201ENST00000364351 DNAJC5Q9H3Z4 198 aa14.55□□□□□ -0.08
RNU4-40P-201ENST00000364351 LHX6Q9UPM6 363 aa14.55□□□□□ -0.08
RNU4-40P-201ENST00000364351 GPHNQ9NQX3 736 aaPredicted RBP14.54□□□□□ -0.08
RNU4-40P-201ENST00000364351 FOXK1P85037 733 aa14.53□□□□□ -0.08
RNU4-40P-201ENST00000364351 PLPP6Q8IY26 295 aa14.53□□□□□ -0.08
RNU4-40P-201ENST00000364351 ANKRD13DQ6ZTN6 518 aa14.52□□□□□ -0.09
RNU4-40P-201ENST00000364351 RYDENQ9NUL5 291 aaKnown RBP14.51□□□□□ -0.09
RNU4-40P-201ENST00000364351 DSG2Q14126 1118 aa14.49□□□□□ -0.09
RNU4-40P-201ENST00000364351 DCAF8L2P0C7V8 631 aa14.48□□□□□ -0.09
RNU4-40P-201ENST00000364351 PTCD2Q8WV60 388 aaKnown RBP14.47□□□□□ -0.09
RNU4-40P-201ENST00000364351 RNF166Q96A37 237 aaPredicted RBP14.47□□□□□ -0.09
RNU4-40P-201ENST00000364351 MYT1LQ9UL68 1186 aa14.47□□□□□ -0.09
RNU4-40P-201ENST00000364351 LSM11P83369 360 aaKnown RBP eCLIP14.44□□□□□ -0.1
RNU4-40P-201ENST00000364351 AXIN2Q9Y2T1 843 aa14.44□□□□□ -0.1
RNU4-40P-201ENST00000364351 PBX2P40425 430 aa14.42□□□□□ -0.1
RNU4-40P-201ENST00000364351 POTEEQ6S8J3 1075 aa14.41□□□□□ -0.1
RNU4-40P-201ENST00000364351 TBC1D12O60347 775 aa14.4□□□□□ -0.1
RNU4-40P-201ENST00000364351 KDM4FA0A1W2PPD8 638 aa14.39□□□□□ -0.11
RNU4-40P-201ENST00000364351 PTGER2P43116 358 aa14.39□□□□□ -0.11
RNU4-40P-201ENST00000364351 PSDA5PKW4 1024 aaPredicted RBP14.38□□□□□ -0.11
RNU4-40P-201ENST00000364351 GTPBP6O43824 516 aaPredicted RBP14.38□□□□□ -0.11
RNU4-40P-201ENST00000364351 CRISPLD2Q9H0B8 497 aa14.37□□□□□ -0.11
RNU4-40P-201ENST00000364351 UPF1Q92900 1129 aaKnown RBP eCLIP14.34□□□□□ -0.11
RNU4-40P-201ENST00000364351 ARHGAP33O14559 1287 aa14.33□□□□□ -0.12
RNU4-40P-201ENST00000364351 PDE4AP27815 886 aa14.33□□□□□ -0.12
RNU4-40P-201ENST00000364351 PPP1R15BQ5SWA1 713 aa14.33□□□□□ -0.12
RNU4-40P-201ENST00000364351 OXER1Q8TDS5 423 aa14.31□□□□□ -0.12
RNU4-40P-201ENST00000364351 NCKAP5LQ9HCH0 1330 aa14.31□□□□□ -0.12
RNU4-40P-201ENST00000364351 PPP4R3BQ5MIZ7 849 aa14.29□□□□□ -0.12
RNU4-40P-201ENST00000364351 PSEN2P49810 448 aa14.26□□□□□ -0.13
RNU4-40P-201ENST00000364351 LARP6Q9BRS8 491 aaKnown RBP14.26□□□□□ -0.13
RNU4-40P-201ENST00000364351 ADGRD1Q6QNK2 874 aa14.25□□□□□ -0.13
RNU4-40P-201ENST00000364351 DMRTA1Q5VZB9 504 aa14.23□□□□□ -0.13
RNU4-40P-201ENST00000364351 DDX27Q96GQ7 796 aaKnown RBP14.21□□□□□ -0.13
RNU4-40P-201ENST00000364351 ZNF454Q8N9F8 522 aa14.19□□□□□ -0.14
RNU4-40P-201ENST00000364351 KCNK17Q96T54 332 aa14.18□□□□□ -0.14
RNU4-40P-201ENST00000364351 TK2O00142 265 aa14.17□□□□□ -0.14
RNU4-40P-201ENST00000364351 KCNH8Q96L42 1107 aa14.17□□□□□ -0.14
RNU4-40P-201ENST00000364351 EVI5O60447 810 aa14.14□□□□□ -0.15
RNU4-40P-201ENST00000364351 MFSD10Q14728 455 aa14.14□□□□□ -0.15
RNU4-40P-201ENST00000364351 CADPS2Q86UW7 1296 aa14.14□□□□□ -0.15
RNU4-40P-201ENST00000364351 MAP3K9P80192 1104 aa14.13□□□□□ -0.15
RNU4-40P-201ENST00000364351 HRO43593 1189 aa14.12□□□□□ -0.15
RNU4-40P-201ENST00000364351 FOSBP53539 338 aa14.11□□□□□ -0.15
RNU4-40P-201ENST00000364351 STAC3Q96MF2 364 aa14.11□□□□□ -0.15
RNU4-40P-201ENST00000364351 ANO8Q9HCE9 1232 aaPredicted RBP14.11□□□□□ -0.15
RNU4-40P-201ENST00000364351 BCL2L12Q9HB09 334 aa14.08□□□□□ -0.16
RNU4-40P-201ENST00000364351 EMILIN3Q9NT22 766 aa14.08□□□□□ -0.16
RNU4-40P-201ENST00000364351 HCSTQ9UBK5 93 aa14.07□□□□□ -0.16
RNU4-40P-201ENST00000364351 PTPREP23469 700 aa14.05□□□□□ -0.16
RNU4-40P-201ENST00000364351 BBXQ8WY36 941 aaPredicted RBP14.05□□□□□ -0.16
RNU4-40P-201ENST00000364351 JPH4Q96JJ6 628 aa14.05□□□□□ -0.16
RNU4-40P-201ENST00000364351 VPS9D1Q9Y2B5 631 aa14.05□□□□□ -0.16
RNU4-40P-201ENST00000364351 ZDHHC16Q969W1 377 aa14.03□□□□□ -0.16
RNU4-40P-201ENST00000364351 KCTD12Q96CX2 325 aaKnown RBP14.03□□□□□ -0.16
RNU4-40P-201ENST00000364351 ADAM33Q9BZ11 813 aa14.01□□□□□ -0.17
RNU4-40P-201ENST00000364351 SLC4A5Q9BY07 1137 aa13.97□□□□□ -0.17
RNU4-40P-201ENST00000364351 ZBED2Q9BTP6 218 aa13.96□□□□□ -0.17
RNU4-40P-201ENST00000364351 PLA2G2EQ9NZK7 142 aa13.96□□□□□ -0.17
RNU4-40P-201ENST00000364351 AMER1Q5JTC6 1135 aaPredicted RBP13.95□□□□□ -0.18
RNU4-40P-201ENST00000364351 PCDHGA10Q9Y5H3 936 aa13.95□□□□□ -0.18
RNU4-40P-201ENST00000364351 SPRYD3Q8NCJ5 442 aa13.93□□□□□ -0.18
RNU4-40P-201ENST00000364351 CAMK2BQ13554 666 aa13.92□□□□□ -0.18
RNU4-40P-201ENST00000364351 BHMG1C9JSJ3 638 aaPredicted RBP13.91□□□□□ -0.18
RNU4-40P-201ENST00000364351 DPYSL4O14531 572 aa13.91□□□□□ -0.18
RNU4-40P-201ENST00000364351 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.91□□□□□ -0.18
RNU4-40P-201ENST00000364351 PTPN5P54829 565 aa13.9□□□□□ -0.18
RNU4-40P-201ENST00000364351 RTN4Q9NQC3 1192 aaKnown RBP13.9□□□□□ -0.18
RNU4-40P-201ENST00000364351 GOLGA8CPA6NN73 597 aa13.89□□□□□ -0.19
RNU4-40P-201ENST00000364351 TYW1BQ6NUM6 668 aa13.89□□□□□ -0.19
RNU4-40P-201ENST00000364351 MRPL50Q8N5N7 158 aaKnown RBP13.89□□□□□ -0.19
RNU4-40P-201ENST00000364351 PHF14O94880 888 aa13.88□□□□□ -0.19
RNU4-40P-201ENST00000364351 FBXW7Q969H0 707 aa13.87□□□□□ -0.19
RNU4-40P-201ENST00000364351 PPP1R3GB7ZBB8 358 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms