RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 BAZ1AQ9NRL2 1556 aaPredicted RBP23.37■■□□□ 1.33
SHANK1-202ENST00000359082 RTF1Q92541 710 aaKnown RBP23.37■■□□□ 1.33
SHANK1-202ENST00000359082 CEP164Q9UPV0 1460 aa23.37■■□□□ 1.33
SHANK1-202ENST00000359082 KANK1Q14678 1352 aa23.36■■□□□ 1.33
SHANK1-202ENST00000359082 CCNB3Q8WWL7 1395 aa23.36■■□□□ 1.33
SHANK1-202ENST00000359082 EIF4G1Q04637 1599 aaKnown RBP23.35■■□□□ 1.33
SHANK1-202ENST00000359082 DEKP35659 375 aaKnown RBP23.33■■□□□ 1.33
SHANK1-202ENST00000359082 STK26Q9P289 416 aa23.31■■□□□ 1.32
SHANK1-202ENST00000359082 ARID3AQ99856 593 aa23.29■■□□□ 1.32
SHANK1-202ENST00000359082 KIAA1211Q6ZU35 1233 aa23.28■■□□□ 1.32
SHANK1-202ENST00000359082 ZNF330Q9Y3S2 320 aaPredicted RBP23.28■■□□□ 1.32
SHANK1-202ENST00000359082 KIAA2012Q0VF49 1180 aa23.26■■□□□ 1.31
SHANK1-202ENST00000359082 TNIKQ9UKE5 1360 aa23.26■■□□□ 1.31
SHANK1-202ENST00000359082 GZF1Q9H116 711 aaPredicted RBP23.26■■□□□ 1.31
SHANK1-202ENST00000359082 ITPRIPQ8IWB1 547 aa23.25■■□□□ 1.31
SHANK1-202ENST00000359082 PAK3O75914 559 aaPredicted RBP23.25■■□□□ 1.31
SHANK1-202ENST00000359082 HDGFP51858 240 aaKnown RBP23.24■■□□□ 1.31
SHANK1-202ENST00000359082 CFAP44Q96MT7 982 aa23.24■■□□□ 1.31
SHANK1-202ENST00000359082 HSPA5P11021 654 aaKnown RBP23.24■■□□□ 1.31
SHANK1-202ENST00000359082 TRHP20396 242 aaPredicted RBP23.23■■□□□ 1.31
SHANK1-202ENST00000359082 NOC3LQ8WTT2 800 aaKnown RBP23.22■■□□□ 1.31
SHANK1-202ENST00000359082 KTN1Q86UP2 1357 aaKnown RBP23.22■■□□□ 1.31
SHANK1-202ENST00000359082 HDGFL2Q7Z4V5 671 aaPredicted RBP23.22■■□□□ 1.31
SHANK1-202ENST00000359082 IPO8O15397 1037 aaKnown RBP23.2■■□□□ 1.3
SHANK1-202ENST00000359082 HSP90B1P14625 803 aaKnown RBP23.2■■□□□ 1.3
SHANK1-202ENST00000359082 GBP4Q96PP9 640 aa23.19■■□□□ 1.3
SHANK1-202ENST00000359082 CSB-PGBD3P0DP91 1061 aa23.18■■□□□ 1.3
SHANK1-202ENST00000359082 SLKQ9H2G2 1235 aaPredicted RBP23.18■■□□□ 1.3
SHANK1-202ENST00000359082 RBM19Q9Y4C8 960 aaKnown RBP23.18■■□□□ 1.3
SHANK1-202ENST00000359082 FOXD1Q16676 465 aa23.17■■□□□ 1.3
SHANK1-202ENST00000359082 FHAD1B1AJZ9 1412 aa23.16■■□□□ 1.3
SHANK1-202ENST00000359082 GGT6Q6P531 493 aa23.15■■□□□ 1.3
SHANK1-202ENST00000359082 U2AF1L5P0DN76 240 aaPredicted RBP23.14■■□□□ 1.3
SHANK1-202ENST00000359082 U2AF1Q01081 240 aaKnown RBP eCLIP23.14■■□□□ 1.3
SHANK1-202ENST00000359082 CHMP3Q9Y3E7 222 aa23.14■■□□□ 1.3
SHANK1-202ENST00000359082 PTMSP20962 102 aa23.14■■□□□ 1.29
SHANK1-202ENST00000359082 PDE4CQ08493 712 aa23.14■■□□□ 1.29
SHANK1-202ENST00000359082 MFAP1P55081 439 aaKnown RBP23.13■■□□□ 1.29
SHANK1-202ENST00000359082 RWDD1Q9H446 243 aaPredicted RBP23.13■■□□□ 1.29
SHANK1-202ENST00000359082 CCER2I3L3R5 266 aa23.12■■□□□ 1.29
SHANK1-202ENST00000359082 RCAN3Q9UKA8 241 aa23.12■■□□□ 1.29
SHANK1-202ENST00000359082 ROCK2O75116 1388 aaKnown RBP23.11■■□□□ 1.29
SHANK1-202ENST00000359082 GORABQ5T7V8 394 aa23.1■■□□□ 1.29
SHANK1-202ENST00000359082 TRIM6-TRIM34B2RNG4 842 aa23.09■■□□□ 1.29
SHANK1-202ENST00000359082 HTATSF1O43719 755 aaKnown RBP23.09■■□□□ 1.29
SHANK1-202ENST00000359082 TPM4P67936 248 aa23.09■■□□□ 1.29
SHANK1-202ENST00000359082 PKD2Q13563 968 aa23.09■■□□□ 1.29
SHANK1-202ENST00000359082 NOL8Q76FK4 1167 aaKnown RBP23.09■■□□□ 1.29
SHANK1-202ENST00000359082 FOXD4L1Q9NU39 408 aa23.09■■□□□ 1.29
SHANK1-202ENST00000359082 PRM3Q9NNZ6 103 aa23.09■■□□□ 1.29
SHANK1-202ENST00000359082 CALD1Q05682 793 aaKnown RBP23.08■■□□□ 1.29
SHANK1-202ENST00000359082 CARMIL1Q5VZK9 1371 aa23.08■■□□□ 1.28
SHANK1-202ENST00000359082 CUX2O14529 1486 aa23.08■■□□□ 1.28
SHANK1-202ENST00000359082 SYAP1Q96A49 352 aaPredicted RBP23.06■■□□□ 1.28
SHANK1-202ENST00000359082 SETD5Q9C0A6 1442 aa23.06■■□□□ 1.28
SHANK1-202ENST00000359082 CREBRFQ8IUR6 639 aa23.06■■□□□ 1.28
SHANK1-202ENST00000359082 TAF7LQ5H9L4 462 aa23.05■■□□□ 1.28
SHANK1-202ENST00000359082 GPATCH3Q96I76 525 aa23.05■■□□□ 1.28
SHANK1-202ENST00000359082 TMX4Q9H1E5 349 aaPredicted RBP23.05■■□□□ 1.28
SHANK1-202ENST00000359082 ARHGAP35Q9NRY4 1499 aa23.04■■□□□ 1.28
SHANK1-202ENST00000359082 PMFBP1Q8TBY8 1022 aa23.03■■□□□ 1.28
SHANK1-202ENST00000359082 CCDC9Q9Y3X0 531 aaKnown RBP23.03■■□□□ 1.28
SHANK1-202ENST00000359082 STK31Q9BXU1 1019 aa23.02■■□□□ 1.28
SHANK1-202ENST00000359082 A0A0U1RQG5 324 aaPredicted RBP23.02■■□□□ 1.28
SHANK1-202ENST00000359082 SMC4Q9NTJ3 1288 aa23.02■■□□□ 1.28
SHANK1-202ENST00000359082 CCDC146Q8IYE0 955 aa23.02■■□□□ 1.27
SHANK1-202ENST00000359082 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.01■■□□□ 1.27
SHANK1-202ENST00000359082 SLC4A10Q6U841 1118 aa23.01■■□□□ 1.27
SHANK1-202ENST00000359082 RASSF8Q8NHQ8 419 aa23.01■■□□□ 1.27
SHANK1-202ENST00000359082 SPAG9O60271 1321 aaKnown RBP23.01■■□□□ 1.27
SHANK1-202ENST00000359082 SMARCA2P51531 1590 aa23■■□□□ 1.27
SHANK1-202ENST00000359082 GOLGA6L3A6NEY3 463 aa23■■□□□ 1.27
SHANK1-202ENST00000359082 PDS5BQ9NTI5 1447 aa22.99■■□□□ 1.27
SHANK1-202ENST00000359082 RALBP1Q15311 655 aa22.97■■□□□ 1.27
SHANK1-202ENST00000359082 TCERG1O14776 1098 aaKnown RBP22.97■■□□□ 1.27
SHANK1-202ENST00000359082 CECR2Q9BXF3 1484 aa22.97■■□□□ 1.27
SHANK1-202ENST00000359082 CARMIL2Q6F5E8 1435 aa22.97■■□□□ 1.27
SHANK1-202ENST00000359082 FOXD4L5Q5VV16 416 aaPredicted RBP22.97■■□□□ 1.27
SHANK1-202ENST00000359082 FOXD4L4Q8WXT5 416 aaPredicted RBP22.97■■□□□ 1.27
SHANK1-202ENST00000359082 G3V3G9 751 aa22.95■■□□□ 1.27
SHANK1-202ENST00000359082 DCAF8Q5TAQ9 597 aa22.95■■□□□ 1.27
SHANK1-202ENST00000359082 ANO8Q9HCE9 1232 aaPredicted RBP22.95■■□□□ 1.26
SHANK1-202ENST00000359082 NUTM2DQ5VT03 806 aaPredicted RBP22.95■■□□□ 1.26
SHANK1-202ENST00000359082 CLUAP1Q96AJ1 413 aa22.94■■□□□ 1.26
SHANK1-202ENST00000359082 GOLGA6L1Q8N7Z2 621 aa22.94■■□□□ 1.26
SHANK1-202ENST00000359082 TNNT3P45378 269 aaPredicted RBP22.92■■□□□ 1.26
SHANK1-202ENST00000359082 CSPP1Q1MSJ5 1256 aa22.92■■□□□ 1.26
SHANK1-202ENST00000359082 TOMM22Q9NS69 142 aa22.92■■□□□ 1.26
SHANK1-202ENST00000359082 TIMELESSQ9UNS1 1208 aa22.92■■□□□ 1.26
SHANK1-202ENST00000359082 EIF3AQ14152 1382 aaKnown RBP22.92■■□□□ 1.26
SHANK1-202ENST00000359082 HMMRO75330 724 aa22.91■■□□□ 1.26
SHANK1-202ENST00000359082 VPS53Q5VIR6 699 aa22.91■■□□□ 1.26
SHANK1-202ENST00000359082 CCDC34Q96HJ3 373 aa22.89■■□□□ 1.26
SHANK1-202ENST00000359082 MPHOSPH9Q99550 1183 aa22.89■■□□□ 1.25
SHANK1-202ENST00000359082 LTV1Q96GA3 475 aaPredicted RBP22.88■■□□□ 1.25
SHANK1-202ENST00000359082 NUP155O75694 1391 aa22.87■■□□□ 1.25
SHANK1-202ENST00000359082 SOGA1O94964 1423 aa22.85■■□□□ 1.25
SHANK1-202ENST00000359082 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.85■■□□□ 1.25
SHANK1-202ENST00000359082 CENPJQ9HC77 1338 aaPredicted RBP22.85■■□□□ 1.25
SHANK1-202ENST00000359082 MARCH6O60337 910 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms