RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 BAZ1AQ9NRL2 1556 aaPredicted RBP23.37■■□□□ 1.33
SHANK1-202ENST00000359082 RTF1Q92541 710 aaKnown RBP23.37■■□□□ 1.33
SHANK1-202ENST00000359082 CEP164Q9UPV0 1460 aa23.37■■□□□ 1.33
SHANK1-202ENST00000359082 KANK1Q14678 1352 aa23.36■■□□□ 1.33
SHANK1-202ENST00000359082 CCNB3Q8WWL7 1395 aa23.36■■□□□ 1.33
SHANK1-202ENST00000359082 EIF4G1Q04637 1599 aaKnown RBP23.35■■□□□ 1.33
SHANK1-202ENST00000359082 DEKP35659 375 aaKnown RBP23.33■■□□□ 1.33
SHANK1-202ENST00000359082 STK26Q9P289 416 aa23.31■■□□□ 1.32
SHANK1-202ENST00000359082 ARID3AQ99856 593 aa23.29■■□□□ 1.32
SHANK1-202ENST00000359082 KIAA1211Q6ZU35 1233 aa23.28■■□□□ 1.32
SHANK1-202ENST00000359082 ZNF330Q9Y3S2 320 aaPredicted RBP23.28■■□□□ 1.32
SHANK1-202ENST00000359082 KIAA2012Q0VF49 1180 aa23.26■■□□□ 1.31
SHANK1-202ENST00000359082 TNIKQ9UKE5 1360 aa23.26■■□□□ 1.31
SHANK1-202ENST00000359082 GZF1Q9H116 711 aaPredicted RBP23.26■■□□□ 1.31
SHANK1-202ENST00000359082 ITPRIPQ8IWB1 547 aa23.25■■□□□ 1.31
SHANK1-202ENST00000359082 PAK3O75914 559 aaPredicted RBP23.25■■□□□ 1.31
SHANK1-202ENST00000359082 HDGFP51858 240 aaKnown RBP23.24■■□□□ 1.31
SHANK1-202ENST00000359082 CFAP44Q96MT7 982 aa23.24■■□□□ 1.31
SHANK1-202ENST00000359082 HSPA5P11021 654 aaKnown RBP23.24■■□□□ 1.31
SHANK1-202ENST00000359082 TRHP20396 242 aaPredicted RBP23.23■■□□□ 1.31
SHANK1-202ENST00000359082 NOC3LQ8WTT2 800 aaKnown RBP23.22■■□□□ 1.31
SHANK1-202ENST00000359082 KTN1Q86UP2 1357 aaKnown RBP23.22■■□□□ 1.31
SHANK1-202ENST00000359082 HDGFL2Q7Z4V5 671 aaPredicted RBP23.22■■□□□ 1.31
SHANK1-202ENST00000359082 IPO8O15397 1037 aaKnown RBP23.2■■□□□ 1.3
SHANK1-202ENST00000359082 HSP90B1P14625 803 aaKnown RBP23.2■■□□□ 1.3
SHANK1-202ENST00000359082 GBP4Q96PP9 640 aa23.19■■□□□ 1.3
SHANK1-202ENST00000359082 CSB-PGBD3P0DP91 1061 aa23.18■■□□□ 1.3
SHANK1-202ENST00000359082 SLKQ9H2G2 1235 aaPredicted RBP23.18■■□□□ 1.3
SHANK1-202ENST00000359082 RBM19Q9Y4C8 960 aaKnown RBP23.18■■□□□ 1.3
SHANK1-202ENST00000359082 FOXD1Q16676 465 aa23.17■■□□□ 1.3
SHANK1-202ENST00000359082 FHAD1B1AJZ9 1412 aa23.16■■□□□ 1.3
SHANK1-202ENST00000359082 GGT6Q6P531 493 aa23.15■■□□□ 1.3
SHANK1-202ENST00000359082 U2AF1L5P0DN76 240 aaPredicted RBP23.14■■□□□ 1.3
SHANK1-202ENST00000359082 U2AF1Q01081 240 aaKnown RBP eCLIP23.14■■□□□ 1.3
SHANK1-202ENST00000359082 CHMP3Q9Y3E7 222 aa23.14■■□□□ 1.3
SHANK1-202ENST00000359082 PTMSP20962 102 aa23.14■■□□□ 1.29
SHANK1-202ENST00000359082 PDE4CQ08493 712 aa23.14■■□□□ 1.29
SHANK1-202ENST00000359082 MFAP1P55081 439 aaKnown RBP23.13■■□□□ 1.29
SHANK1-202ENST00000359082 RWDD1Q9H446 243 aaPredicted RBP23.13■■□□□ 1.29
SHANK1-202ENST00000359082 CCER2I3L3R5 266 aa23.12■■□□□ 1.29
SHANK1-202ENST00000359082 RCAN3Q9UKA8 241 aa23.12■■□□□ 1.29
SHANK1-202ENST00000359082 ROCK2O75116 1388 aaKnown RBP23.11■■□□□ 1.29
SHANK1-202ENST00000359082 GORABQ5T7V8 394 aa23.1■■□□□ 1.29
SHANK1-202ENST00000359082 TRIM6-TRIM34B2RNG4 842 aa23.09■■□□□ 1.29
SHANK1-202ENST00000359082 HTATSF1O43719 755 aaKnown RBP23.09■■□□□ 1.29
SHANK1-202ENST00000359082 TPM4P67936 248 aa23.09■■□□□ 1.29
SHANK1-202ENST00000359082 PKD2Q13563 968 aa23.09■■□□□ 1.29
SHANK1-202ENST00000359082 NOL8Q76FK4 1167 aaKnown RBP23.09■■□□□ 1.29
SHANK1-202ENST00000359082 FOXD4L1Q9NU39 408 aa23.09■■□□□ 1.29
SHANK1-202ENST00000359082 PRM3Q9NNZ6 103 aa23.09■■□□□ 1.29
SHANK1-202ENST00000359082 CALD1Q05682 793 aaKnown RBP23.08■■□□□ 1.29
SHANK1-202ENST00000359082 CARMIL1Q5VZK9 1371 aa23.08■■□□□ 1.28
SHANK1-202ENST00000359082 CUX2O14529 1486 aa23.08■■□□□ 1.28
SHANK1-202ENST00000359082 SYAP1Q96A49 352 aaPredicted RBP23.06■■□□□ 1.28
SHANK1-202ENST00000359082 SETD5Q9C0A6 1442 aa23.06■■□□□ 1.28
SHANK1-202ENST00000359082 CREBRFQ8IUR6 639 aa23.06■■□□□ 1.28
SHANK1-202ENST00000359082 TAF7LQ5H9L4 462 aa23.05■■□□□ 1.28
SHANK1-202ENST00000359082 GPATCH3Q96I76 525 aa23.05■■□□□ 1.28
SHANK1-202ENST00000359082 TMX4Q9H1E5 349 aaPredicted RBP23.05■■□□□ 1.28
SHANK1-202ENST00000359082 ARHGAP35Q9NRY4 1499 aa23.04■■□□□ 1.28
SHANK1-202ENST00000359082 PMFBP1Q8TBY8 1022 aa23.03■■□□□ 1.28
SHANK1-202ENST00000359082 CCDC9Q9Y3X0 531 aaKnown RBP23.03■■□□□ 1.28
SHANK1-202ENST00000359082 STK31Q9BXU1 1019 aa23.02■■□□□ 1.28
SHANK1-202ENST00000359082 A0A0U1RQG5 324 aaPredicted RBP23.02■■□□□ 1.28
SHANK1-202ENST00000359082 SMC4Q9NTJ3 1288 aa23.02■■□□□ 1.28
SHANK1-202ENST00000359082 CCDC146Q8IYE0 955 aa23.02■■□□□ 1.27
SHANK1-202ENST00000359082 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.01■■□□□ 1.27
SHANK1-202ENST00000359082 SLC4A10Q6U841 1118 aa23.01■■□□□ 1.27
SHANK1-202ENST00000359082 RASSF8Q8NHQ8 419 aa23.01■■□□□ 1.27
SHANK1-202ENST00000359082 SPAG9O60271 1321 aaKnown RBP23.01■■□□□ 1.27
SHANK1-202ENST00000359082 SMARCA2P51531 1590 aa23■■□□□ 1.27
SHANK1-202ENST00000359082 GOLGA6L3A6NEY3 463 aa23■■□□□ 1.27
SHANK1-202ENST00000359082 PDS5BQ9NTI5 1447 aa22.99■■□□□ 1.27
SHANK1-202ENST00000359082 RALBP1Q15311 655 aa22.97■■□□□ 1.27
SHANK1-202ENST00000359082 TCERG1O14776 1098 aaKnown RBP22.97■■□□□ 1.27
SHANK1-202ENST00000359082 CECR2Q9BXF3 1484 aa22.97■■□□□ 1.27
SHANK1-202ENST00000359082 CARMIL2Q6F5E8 1435 aa22.97■■□□□ 1.27
SHANK1-202ENST00000359082 FOXD4L5Q5VV16 416 aaPredicted RBP22.97■■□□□ 1.27
SHANK1-202ENST00000359082 FOXD4L4Q8WXT5 416 aaPredicted RBP22.97■■□□□ 1.27
SHANK1-202ENST00000359082 G3V3G9 751 aa22.95■■□□□ 1.27
SHANK1-202ENST00000359082 DCAF8Q5TAQ9 597 aa22.95■■□□□ 1.27
SHANK1-202ENST00000359082 ANO8Q9HCE9 1232 aaPredicted RBP22.95■■□□□ 1.26
SHANK1-202ENST00000359082 NUTM2DQ5VT03 806 aaPredicted RBP22.95■■□□□ 1.26
SHANK1-202ENST00000359082 CLUAP1Q96AJ1 413 aa22.94■■□□□ 1.26
SHANK1-202ENST00000359082 GOLGA6L1Q8N7Z2 621 aa22.94■■□□□ 1.26
SHANK1-202ENST00000359082 TNNT3P45378 269 aaPredicted RBP22.92■■□□□ 1.26
SHANK1-202ENST00000359082 CSPP1Q1MSJ5 1256 aa22.92■■□□□ 1.26
SHANK1-202ENST00000359082 TOMM22Q9NS69 142 aa22.92■■□□□ 1.26
SHANK1-202ENST00000359082 TIMELESSQ9UNS1 1208 aa22.92■■□□□ 1.26
SHANK1-202ENST00000359082 EIF3AQ14152 1382 aaKnown RBP22.92■■□□□ 1.26
SHANK1-202ENST00000359082 HMMRO75330 724 aa22.91■■□□□ 1.26
SHANK1-202ENST00000359082 VPS53Q5VIR6 699 aa22.91■■□□□ 1.26
SHANK1-202ENST00000359082 CCDC34Q96HJ3 373 aa22.89■■□□□ 1.26
SHANK1-202ENST00000359082 MPHOSPH9Q99550 1183 aa22.89■■□□□ 1.25
SHANK1-202ENST00000359082 LTV1Q96GA3 475 aaPredicted RBP22.88■■□□□ 1.25
SHANK1-202ENST00000359082 NUP155O75694 1391 aa22.87■■□□□ 1.25
SHANK1-202ENST00000359082 SOGA1O94964 1423 aa22.85■■□□□ 1.25
SHANK1-202ENST00000359082 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.85■■□□□ 1.25
SHANK1-202ENST00000359082 CENPJQ9HC77 1338 aaPredicted RBP22.85■■□□□ 1.25
SHANK1-202ENST00000359082 MARCH6O60337 910 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms