RNA–Protein interactions for RNA: ENST00000349703.6

RFC1-201, Transcript of replication factor C subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RFC1, Length 4,859 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-201ENST00000349703 NUTM2DQ5VT03 806 aaPredicted RBP8.15□□□□□ -1.11
RFC1-201ENST00000349703 NUTM2AQ8IVF1 878 aaPredicted RBP8.15□□□□□ -1.11
RFC1-201ENST00000349703 GRXCR2A6NFK2 248 aa8.14□□□□□ -1.11
RFC1-201ENST00000349703 AXDND1Q5T1B0 1012 aaPredicted RBP8.13□□□□□ -1.11
RFC1-201ENST00000349703 CSPP1Q1MSJ5 1256 aa8.13□□□□□ -1.11
RFC1-201ENST00000349703 FLIIQ13045 1269 aa8.12□□□□□ -1.11
RFC1-201ENST00000349703 PPP4R4Q6NUP7 873 aa8.12□□□□□ -1.11
RFC1-201ENST00000349703 TRIM63Q969Q1 353 aa8.12□□□□□ -1.11
RFC1-201ENST00000349703 ANP32EQ9BTT0 268 aa8.11□□□□□ -1.11
RFC1-201ENST00000349703 SLC4A3P48751 1232 aa8.11□□□□□ -1.11
RFC1-201ENST00000349703 PYGBP11216 843 aa8.11□□□□□ -1.11
RFC1-201ENST00000349703 NCLP19338 710 aaKnown RBP8.1□□□□□ -1.11
RFC1-201ENST00000349703 SLC4A2P04920 1241 aa8.1□□□□□ -1.11
RFC1-201ENST00000349703 ABL2P42684 1182 aa8.09□□□□□ -1.11
RFC1-201ENST00000349703 IBSPP21815 317 aaPredicted RBP8.08□□□□□ -1.12
RFC1-201ENST00000349703 PKD2Q13563 968 aa8.08□□□□□ -1.12
RFC1-201ENST00000349703 LARP6Q9BRS8 491 aaKnown RBP8.08□□□□□ -1.12
RFC1-201ENST00000349703 DMRT2Q9Y5R5 561 aa8.08□□□□□ -1.12
RFC1-201ENST00000349703 PSME1Q06323 249 aa8.07□□□□□ -1.12
RFC1-201ENST00000349703 FOXD4L5Q5VV16 416 aaPredicted RBP8.06□□□□□ -1.12
RFC1-201ENST00000349703 FOXD4L4Q8WXT5 416 aaPredicted RBP8.06□□□□□ -1.12
RFC1-201ENST00000349703 ZNF330Q9Y3S2 320 aaPredicted RBP8.06□□□□□ -1.12
RFC1-201ENST00000349703 AK7Q96M32 723 aa8.06□□□□□ -1.12
RFC1-201ENST00000349703 R3HCC1Q9Y3T6 440 aaKnown RBP8.06□□□□□ -1.12
RFC1-201ENST00000349703 MKRN3Q13064 507 aaKnown RBP8.05□□□□□ -1.12
RFC1-201ENST00000349703 VTI1AQ96AJ9 217 aa8.05□□□□□ -1.12
RFC1-201ENST00000349703 PATL2C9JE40 543 aaKnown RBP8.04□□□□□ -1.12
RFC1-201ENST00000349703 PNMA1Q8ND90 353 aa8.04□□□□□ -1.12
RFC1-201ENST00000349703 RNF40O75150 1001 aa8.04□□□□□ -1.12
RFC1-201ENST00000349703 E2F4Q16254 413 aa8.04□□□□□ -1.12
RFC1-201ENST00000349703 CWC22Q9HCG8 908 aaKnown RBP8.03□□□□□ -1.12
RFC1-201ENST00000349703 MAP10Q9P2G4 905 aa8.02□□□□□ -1.12
RFC1-201ENST00000349703 MAP3K9P80192 1104 aa8.02□□□□□ -1.13
RFC1-201ENST00000349703 PAF1Q8N7H5 531 aa8.02□□□□□ -1.13
RFC1-201ENST00000349703 HDGFP51858 240 aaKnown RBP8.02□□□□□ -1.13
RFC1-201ENST00000349703 MTMR7Q9Y216 660 aa8.01□□□□□ -1.13
RFC1-201ENST00000349703 B4GALNT3Q6L9W6 998 aa8.01□□□□□ -1.13
RFC1-201ENST00000349703 CHMP4BP1P59074 171 aa8□□□□□ -1.13
RFC1-201ENST00000349703 DDRGK1Q96HY6 314 aa8□□□□□ -1.13
RFC1-201ENST00000349703 KCNH8Q96L42 1107 aa8□□□□□ -1.13
RFC1-201ENST00000349703 GPBP1L1Q9HC44 474 aaPredicted RBP8□□□□□ -1.13
RFC1-201ENST00000349703 STAC3Q96MF2 364 aa8□□□□□ -1.13
RFC1-201ENST00000349703 CDCA8Q53HL2 280 aa7.99□□□□□ -1.13
RFC1-201ENST00000349703 NOL8Q76FK4 1167 aaKnown RBP7.99□□□□□ -1.13
RFC1-201ENST00000349703 NUTM1Q86Y26 1132 aa7.99□□□□□ -1.13
RFC1-201ENST00000349703 TMX4Q9H1E5 349 aaPredicted RBP7.99□□□□□ -1.13
RFC1-201ENST00000349703 TMC2Q8TDI7 906 aa7.98□□□□□ -1.13
RFC1-201ENST00000349703 POLR3EQ9NVU0 708 aa7.98□□□□□ -1.13
RFC1-201ENST00000349703 MRS2Q9HD23 443 aa7.98□□□□□ -1.13
RFC1-201ENST00000349703 CCDC82Q8N4S0 544 aa7.98□□□□□ -1.13
RFC1-201ENST00000349703 CCDC27Q2M243 656 aa7.98□□□□□ -1.13
RFC1-201ENST00000349703 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.97□□□□□ -1.13
RFC1-201ENST00000349703 HS6ST3Q8IZP7 471 aa7.97□□□□□ -1.13
RFC1-201ENST00000349703 ZFP91Q96JP5 570 aaPredicted RBP7.97□□□□□ -1.13
RFC1-201ENST00000349703 PRPF38AQ8NAV1 312 aaKnown RBP7.97□□□□□ -1.13
RFC1-201ENST00000349703 ATF5Q9Y2D1 282 aaPredicted RBP7.97□□□□□ -1.13
RFC1-201ENST00000349703 PDE4AP27815 886 aa7.97□□□□□ -1.13
RFC1-201ENST00000349703 UPF1Q92900 1129 aaKnown RBP eCLIP7.97□□□□□ -1.134e-8■■■■■ 27.9
RFC1-201ENST00000349703 SERPINA10Q9UK55 444 aa7.97□□□□□ -1.13
RFC1-201ENST00000349703 MFAP1P55081 439 aaKnown RBP7.96□□□□□ -1.13
RFC1-201ENST00000349703 OSCARQ8IYS5 282 aa7.96□□□□□ -1.13
RFC1-201ENST00000349703 TBC1D12O60347 775 aa7.96□□□□□ -1.14
RFC1-201ENST00000349703 GLIPR1L2Q4G1C9 344 aa7.95□□□□□ -1.14
RFC1-201ENST00000349703 RTL5Q5HYW3 569 aaPredicted RBP7.95□□□□□ -1.14
RFC1-201ENST00000349703 ZNF467Q7Z7K2 595 aaPredicted RBP7.95□□□□□ -1.14
RFC1-201ENST00000349703 OS9Q13438 667 aaPredicted RBP7.95□□□□□ -1.14
RFC1-201ENST00000349703 TAF7LQ5H9L4 462 aa7.94□□□□□ -1.14
RFC1-201ENST00000349703 BRPF1P55201 1214 aaPredicted RBP7.94□□□□□ -1.14
RFC1-201ENST00000349703 CABP2Q9NPB3 220 aa7.94□□□□□ -1.14
RFC1-201ENST00000349703 SPDYE1Q8NFV5 336 aaPredicted RBP7.94□□□□□ -1.14
RFC1-201ENST00000349703 A0A0U1RQG5 324 aaPredicted RBP7.94□□□□□ -1.14
RFC1-201ENST00000349703 SUPT16HQ9Y5B9 1047 aaKnown RBP7.93□□□□□ -1.14
RFC1-201ENST00000349703 SPDYE2BA6NHP3 402 aa7.93□□□□□ -1.14
RFC1-201ENST00000349703 SPDYE6P0CI01 402 aa7.93□□□□□ -1.14
RFC1-201ENST00000349703 LMNB1P20700 586 aa7.93□□□□□ -1.14
RFC1-201ENST00000349703 SPDYE2Q495Y8 402 aa7.93□□□□□ -1.14
RFC1-201ENST00000349703 ITGAEP38570 1179 aa7.93□□□□□ -1.14
RFC1-201ENST00000349703 ABL1P00519 1130 aa7.92□□□□□ -1.14
RFC1-201ENST00000349703 NPHP1O15259 732 aa7.92□□□□□ -1.14
RFC1-201ENST00000349703 NLRP6P59044 892 aa7.91□□□□□ -1.14
RFC1-201ENST00000349703 ZNF326Q5BKZ1 582 aaKnown RBP7.91□□□□□ -1.14
RFC1-201ENST00000349703 RSPH4AQ5TD94 716 aa7.91□□□□□ -1.14
RFC1-201ENST00000349703 ANAPC15P60006 121 aa7.91□□□□□ -1.14
RFC1-201ENST00000349703 SEMA3EO15041 775 aa7.91□□□□□ -1.14
RFC1-201ENST00000349703 HOXD11P31277 338 aaPredicted RBP7.9□□□□□ -1.14
RFC1-201ENST00000349703 U3KPZ7 1027 aaPredicted RBP7.9□□□□□ -1.15
RFC1-201ENST00000349703 RB1CC1Q8TDY2 1594 aa7.89□□□□□ -1.15
RFC1-201ENST00000349703 ABCC9O60706 1549 aa7.89□□□□□ -1.15
RFC1-201ENST00000349703 ZC3H15Q8WU90 426 aaKnown RBP7.89□□□□□ -1.15
RFC1-201ENST00000349703 GNL2Q13823 731 aaKnown RBP7.89□□□□□ -1.15
RFC1-201ENST00000349703 CCAR1Q8IX12 1150 aaKnown RBP7.89□□□□□ -1.15
RFC1-201ENST00000349703 AGERQ15109 404 aa7.88□□□□□ -1.15
RFC1-201ENST00000349703 KDM4CQ9H3R0 1056 aa7.88□□□□□ -1.15
RFC1-201ENST00000349703 AP1G2O75843 785 aa7.88□□□□□ -1.15
RFC1-201ENST00000349703 U2SURPO15042 1029 aaKnown RBP7.87□□□□□ -1.15
RFC1-201ENST00000349703 RSF1Q96T23 1441 aaPredicted RBP7.86□□□□□ -1.15
RFC1-201ENST00000349703 DDX27Q96GQ7 796 aaKnown RBP7.86□□□□□ -1.15
RFC1-201ENST00000349703 CT47A1Q5JQC4 288 aaPredicted RBP7.85□□□□□ -1.15
RFC1-201ENST00000349703 SLKQ9H2G2 1235 aaPredicted RBP7.85□□□□□ -1.15
RFC1-201ENST00000349703 EEA1Q15075 1411 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms