RNA–Protein interactions for RNA: ENST00000320578.2

RAB39A-201, Transcript of RAB39A, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB39A, Length 1,830 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB39A-201ENST00000320578 CDC42BPAQ5VT25 1732 aa26.3■■□□□ 1.8
RAB39A-201ENST00000320578 ZCCHC11Q5TAX3 1644 aaKnown RBP26.3■■□□□ 1.8
RAB39A-201ENST00000320578 ZNF644Q9H582 1327 aaPredicted RBP26.28■■□□□ 1.8
RAB39A-201ENST00000320578 GCC2Q8IWJ2 1684 aa26.27■■□□□ 1.8
RAB39A-201ENST00000320578 PREX2Q70Z35 1606 aa26.22■■□□□ 1.79
RAB39A-201ENST00000320578 MAPKBP1O60336 1514 aa26.21■■□□□ 1.79
RAB39A-201ENST00000320578 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.21■■□□□ 1.79
RAB39A-201ENST00000320578 ADGRL2O95490 1459 aa26.2■■□□□ 1.78
RAB39A-201ENST00000320578 SHANK2Q9UPX8 1470 aa26.19■■□□□ 1.78
RAB39A-201ENST00000320578 CHIC2Q9UKJ5 165 aa26.18■■□□□ 1.78
RAB39A-201ENST00000320578 RSPH4AQ5TD94 716 aa26.18■■□□□ 1.78
RAB39A-201ENST00000320578 RRP7BPQ9NSQ0 103 aa26.17■■□□□ 1.78
RAB39A-201ENST00000320578 ARHGEF5Q12774 1597 aa26.17■■□□□ 1.78
RAB39A-201ENST00000320578 TTC37Q6PGP7 1564 aa26.16■■□□□ 1.78
RAB39A-201ENST00000320578 ZNF777Q9ULD5 760 aaPredicted RBP26.16■■□□□ 1.78
RAB39A-201ENST00000320578 CDC42BPBQ9Y5S2 1711 aa26.15■■□□□ 1.78
RAB39A-201ENST00000320578 CROCC2H7BZ55 1655 aa26.15■■□□□ 1.78
RAB39A-201ENST00000320578 NCOA1Q15788 1441 aa26.13■■□□□ 1.77
RAB39A-201ENST00000320578 PLEKHH2Q8IVE3 1493 aa26.12■■□□□ 1.77
RAB39A-201ENST00000320578 PLCH2O75038 1416 aa26.12■■□□□ 1.77
RAB39A-201ENST00000320578 MBD5Q9P267 1494 aa26.12■■□□□ 1.77
RAB39A-201ENST00000320578 WDR7Q9Y4E6 1490 aa26.12■■□□□ 1.77
RAB39A-201ENST00000320578 ADGBQ8N7X0 1667 aa26.12■■□□□ 1.77
RAB39A-201ENST00000320578 KIAA1107Q9UPP5 1409 aa26.11■■□□□ 1.77
RAB39A-201ENST00000320578 ARAP3Q8WWN8 1544 aa26.1■■□□□ 1.77
RAB39A-201ENST00000320578 MYO5CQ9NQX4 1742 aa26.1■■□□□ 1.77
RAB39A-201ENST00000320578 SAMD9LQ8IVG5 1584 aa26.1■■□□□ 1.77
RAB39A-201ENST00000320578 ANKRD30AQ9BXX3 1397 aa26.09■■□□□ 1.77
RAB39A-201ENST00000320578 TIMELESSQ9UNS1 1208 aa26.09■■□□□ 1.77
RAB39A-201ENST00000320578 ARHGAP5Q13017 1502 aa26.07■■□□□ 1.76
RAB39A-201ENST00000320578 KCNH8Q96L42 1107 aa26.07■■□□□ 1.76
RAB39A-201ENST00000320578 CCDC141Q6ZP82 1450 aa26.05■■□□□ 1.76
RAB39A-201ENST00000320578 TSPY4P0CV99 314 aa26.05■■□□□ 1.76
RAB39A-201ENST00000320578 TSPY10P0CW01 314 aa26.05■■□□□ 1.76
RAB39A-201ENST00000320578 C9orf84Q5VXU9 1444 aa26.05■■□□□ 1.76
RAB39A-201ENST00000320578 KDM6BO15054 1643 aa26.03■■□□□ 1.76
RAB39A-201ENST00000320578 EFCAB2Q5VUJ9 269 aa26.02■■□□□ 1.76
RAB39A-201ENST00000320578 NPM1P06748 294 aaKnown RBP eCLIP26.02■■□□□ 1.76
RAB39A-201ENST00000320578 ASXL2Q76L83 1435 aa26.02■■□□□ 1.76
RAB39A-201ENST00000320578 HNRNPMP52272 730 aaKnown RBP eCLIP26■■□□□ 1.75
RAB39A-201ENST00000320578 MAST1Q9Y2H9 1570 aa25.99■■□□□ 1.75
RAB39A-201ENST00000320578 ABCA9Q8IUA7 1624 aa25.98■■□□□ 1.75
RAB39A-201ENST00000320578 SYCP2Q9BX26 1530 aa25.96■■□□□ 1.75
RAB39A-201ENST00000320578 TRIM52Q96A61 297 aa25.95■■□□□ 1.74
RAB39A-201ENST00000320578 ANKRD50Q9ULJ7 1429 aa25.94■■□□□ 1.74
RAB39A-201ENST00000320578 MPHOSPH9Q99550 1183 aa25.93■■□□□ 1.74
RAB39A-201ENST00000320578 DENND4BO75064 1496 aaPredicted RBP25.92■■□□□ 1.74
RAB39A-201ENST00000320578 ABCC1P33527 1531 aa25.92■■□□□ 1.74
RAB39A-201ENST00000320578 SIN3AQ96ST3 1273 aa25.9■■□□□ 1.74
RAB39A-201ENST00000320578 KIF15Q9NS87 1388 aa25.89■■□□□ 1.74
RAB39A-201ENST00000320578 ZNF316A6NFI3 1004 aaPredicted RBP25.89■■□□□ 1.74
RAB39A-201ENST00000320578 ARHGEF12Q9NZN5 1544 aa25.89■■□□□ 1.73
RAB39A-201ENST00000320578 PLXNC1O60486 1568 aa25.86■■□□□ 1.73
RAB39A-201ENST00000320578 KDM5DQ9BY66 1539 aa25.83■■□□□ 1.73
RAB39A-201ENST00000320578 NEUROD1Q13562 356 aa25.83■■□□□ 1.73
RAB39A-201ENST00000320578 FANCAO15360 1455 aa25.82■■□□□ 1.72
RAB39A-201ENST00000320578 PZPP20742 1482 aa25.82■■□□□ 1.72
RAB39A-201ENST00000320578 RIMBP3CA6NJZ7 1639 aa25.82■■□□□ 1.72
RAB39A-201ENST00000320578 RIMBP3BA6NNM3 1639 aa25.82■■□□□ 1.72
RAB39A-201ENST00000320578 RIMBP3Q9UFD9 1639 aa25.82■■□□□ 1.72
RAB39A-201ENST00000320578 RTEL1-TNFRSF6BF6WH68 1400 aa25.82■■□□□ 1.72
RAB39A-201ENST00000320578 SLC4A1APQ9BWU0 796 aaKnown RBP25.79■■□□□ 1.72
RAB39A-201ENST00000320578 ANKRD30BQ9BXX2 1392 aa25.78■■□□□ 1.72
RAB39A-201ENST00000320578 TRAPPC8Q9Y2L5 1435 aa25.78■■□□□ 1.72
RAB39A-201ENST00000320578 PPP1R15AO75807 674 aaPredicted RBP25.77■■□□□ 1.72
RAB39A-201ENST00000320578 DUOX2Q9NRD8 1548 aa25.76■■□□□ 1.72
RAB39A-201ENST00000320578 TONSLQ96HA7 1378 aa25.76■■□□□ 1.71
RAB39A-201ENST00000320578 CD109Q6YHK3 1445 aa25.74■■□□□ 1.71
RAB39A-201ENST00000320578 ERBINQ96RT1 1412 aa25.73■■□□□ 1.71
RAB39A-201ENST00000320578 CFAP74Q9C0B2 1584 aa25.73■■□□□ 1.71
RAB39A-201ENST00000320578 CYB5RLQ6IPT4 315 aa25.72■■□□□ 1.71
RAB39A-201ENST00000320578 ADGRL1O94910 1474 aa25.71■■□□□ 1.71
RAB39A-201ENST00000320578 NUP155O75694 1391 aa25.71■■□□□ 1.71
RAB39A-201ENST00000320578 SPAG9O60271 1321 aaKnown RBP25.71■■□□□ 1.71
RAB39A-201ENST00000320578 SCAPERQ9BY12 1400 aa25.69■■□□□ 1.7
RAB39A-201ENST00000320578 RPRD2Q5VT52 1461 aaKnown RBP25.68■■□□□ 1.7
RAB39A-201ENST00000320578 ZFYVE16Q7Z3T8 1539 aa25.68■■□□□ 1.7
RAB39A-201ENST00000320578 UNC13BO14795 1591 aa25.68■■□□□ 1.7
RAB39A-201ENST00000320578 GLI2P10070 1586 aa25.67■■□□□ 1.7
RAB39A-201ENST00000320578 AFAP1Q8N556 730 aa25.65■■□□□ 1.7
RAB39A-201ENST00000320578 NEO1Q92859 1461 aa25.64■■□□□ 1.7
RAB39A-201ENST00000320578 PKD2Q13563 968 aa25.64■■□□□ 1.7
RAB39A-201ENST00000320578 INO80Q9ULG1 1556 aaPredicted RBP25.64■■□□□ 1.69
RAB39A-201ENST00000320578 MAGI2Q86UL8 1455 aa25.64■■□□□ 1.69
RAB39A-201ENST00000320578 DIEXFQ68CQ4 756 aaKnown RBP25.63■■□□□ 1.69
RAB39A-201ENST00000320578 FOXD1Q16676 465 aa25.62■■□□□ 1.69
RAB39A-201ENST00000320578 ATP7AQ04656 1500 aa25.61■■□□□ 1.69
RAB39A-201ENST00000320578 ZNF518AQ6AHZ1 1483 aa25.61■■□□□ 1.69
RAB39A-201ENST00000320578 FAM135AQ9P2D6 1515 aa25.61■■□□□ 1.69
RAB39A-201ENST00000320578 MAP3K4Q9Y6R4 1608 aa25.57■■□□□ 1.68
RAB39A-201ENST00000320578 IQGAP3Q86VI3 1631 aa25.57■■□□□ 1.68
RAB39A-201ENST00000320578 POGZQ7Z3K3 1410 aa25.55■■□□□ 1.68
RAB39A-201ENST00000320578 KDM5CP41229 1560 aa25.55■■□□□ 1.68
RAB39A-201ENST00000320578 TEX14Q8IWB6 1497 aa25.53■■□□□ 1.68
RAB39A-201ENST00000320578 MLH3Q9UHC1 1453 aa25.53■■□□□ 1.68
RAB39A-201ENST00000320578 DHX29Q7Z478 1369 aaKnown RBP25.52■■□□□ 1.68
RAB39A-201ENST00000320578 L3MBTL2Q969R5 705 aa25.51■■□□□ 1.67
RAB39A-201ENST00000320578 EIF2AK4Q9P2K8 1649 aaKnown RBP25.5■■□□□ 1.67
RAB39A-201ENST00000320578 DEPDC5O75140 1603 aa25.48■■□□□ 1.67
RAB39A-201ENST00000320578 KIDINS220Q9ULH0 1771 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms