RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 BRD4O60885 1362 aaPredicted RBP6.33□□□□□ -1.4
PTPN13-201ENST00000316707 SLC4A1APQ9BWU0 796 aaKnown RBP6.33□□□□□ -1.4
PTPN13-201ENST00000316707 PCF11O94913 1555 aaKnown RBP6.32□□□□□ -1.4
PTPN13-201ENST00000316707 TCOF1Q13428 1488 aaKnown RBP6.32□□□□□ -1.4
PTPN13-201ENST00000316707 RPRD2Q5VT52 1461 aaKnown RBP6.32□□□□□ -1.4
PTPN13-201ENST00000316707 EHBP1L1Q8N3D4 1523 aa6.32□□□□□ -1.4
PTPN13-201ENST00000316707 INSRP06213 1382 aa6.32□□□□□ -1.4
PTPN13-201ENST00000316707 BACH2Q9BYV9 841 aa6.32□□□□□ -1.4
PTPN13-201ENST00000316707 CFAP43Q8NDM7 1665 aa6.32□□□□□ -1.4
PTPN13-201ENST00000316707 SPATA31E1Q6ZUB1 1445 aa6.32□□□□□ -1.4
PTPN13-201ENST00000316707 KDM5BQ9UGL1 1544 aa6.32□□□□□ -1.4
PTPN13-201ENST00000316707 RRP1P56182 461 aaKnown RBP6.31□□□□□ -1.4
PTPN13-201ENST00000316707 CHIC2Q9UKJ5 165 aa6.31□□□□□ -1.4
PTPN13-201ENST00000316707 RCAN3Q9UKA8 241 aa6.31□□□□□ -1.4
PTPN13-201ENST00000316707 KIF15Q9NS87 1388 aa6.31□□□□□ -1.4
PTPN13-201ENST00000316707 NLRP13Q86W25 1043 aa6.31□□□□□ -1.4
PTPN13-201ENST00000316707 MYBBP1AQ9BQG0 1328 aaKnown RBP6.3□□□□□ -1.4
PTPN13-201ENST00000316707 GSE1Q14687 1217 aa6.3□□□□□ -1.4
PTPN13-201ENST00000316707 SNAPC4Q5SXM2 1469 aa6.3□□□□□ -1.4
PTPN13-201ENST00000316707 NBPF8Q3BBV2 869 aa6.3□□□□□ -1.4
PTPN13-201ENST00000316707 DHX29Q7Z478 1369 aaKnown RBP6.29□□□□□ -1.4
PTPN13-201ENST00000316707 LRPPRCP42704 1394 aaKnown RBP6.29□□□□□ -1.4
PTPN13-201ENST00000316707 NPM2Q86SE8 214 aaKnown RBP6.29□□□□□ -1.4
PTPN13-201ENST00000316707 USP47Q96K76 1375 aa6.29□□□□□ -1.4
PTPN13-201ENST00000316707 RSPH6AQ9H0K4 717 aa6.28□□□□□ -1.4
PTPN13-201ENST00000316707 GRIN2BQ13224 1484 aa6.28□□□□□ -1.4
PTPN13-201ENST00000316707 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.28□□□□□ -1.4
PTPN13-201ENST00000316707 ANO8Q9HCE9 1232 aaPredicted RBP6.28□□□□□ -1.4
PTPN13-201ENST00000316707 ARHGEF11O15085 1522 aa6.27□□□□□ -1.41
PTPN13-201ENST00000316707 LAS1LQ9Y4W2 734 aaKnown RBP6.27□□□□□ -1.41
PTPN13-201ENST00000316707 TEX14Q8IWB6 1497 aa6.27□□□□□ -1.41
PTPN13-201ENST00000316707 FANCD2Q9BXW9 1451 aa6.26□□□□□ -1.41
PTPN13-201ENST00000316707 UGGT2Q9NYU1 1516 aa6.26□□□□□ -1.41
PTPN13-201ENST00000316707 EXOC6Q8TAG9 804 aa6.26□□□□□ -1.41
PTPN13-201ENST00000316707 POLR3GLQ9BT43 218 aa6.26□□□□□ -1.41
PTPN13-201ENST00000316707 CARD11Q9BXL7 1154 aa6.26□□□□□ -1.41
PTPN13-201ENST00000316707 GLIPR1L2Q4G1C9 344 aa6.26□□□□□ -1.41
PTPN13-201ENST00000316707 UBE2Q2Q8WVN8 375 aa6.25□□□□□ -1.41
PTPN13-201ENST00000316707 SALL2Q9Y467 1007 aaPredicted RBP6.25□□□□□ -1.41
PTPN13-201ENST00000316707 ZMYM4Q5VZL5 1548 aa6.25□□□□□ -1.41
PTPN13-201ENST00000316707 CC2D2AQ9P2K1 1620 aa6.25□□□□□ -1.41
PTPN13-201ENST00000316707 CENPQQ7L2Z9 268 aaPredicted RBP6.25□□□□□ -1.41
PTPN13-201ENST00000316707 NGEFQ8N5V2 710 aa6.25□□□□□ -1.41
PTPN13-201ENST00000316707 IL27Q8NEV9 243 aa6.25□□□□□ -1.41
PTPN13-201ENST00000316707 POLA1P09884 1462 aaPredicted RBP6.25□□□□□ -1.41
PTPN13-201ENST00000316707 UNC13AQ9UPW8 1703 aa6.25□□□□□ -1.41
PTPN13-201ENST00000316707 NFKBIBQ15653 356 aa6.24□□□□□ -1.41
PTPN13-201ENST00000316707 FAM43AQ8N2R8 423 aa6.24□□□□□ -1.41
PTPN13-201ENST00000316707 KIAA1107Q9UPP5 1409 aa6.24□□□□□ -1.41
PTPN13-201ENST00000316707 FAM161AQ3B820 660 aa6.24□□□□□ -1.41
PTPN13-201ENST00000316707 CUL7Q14999 1698 aa6.24□□□□□ -1.41
PTPN13-201ENST00000316707 ZNF326Q5BKZ1 582 aaKnown RBP6.24□□□□□ -1.41
PTPN13-201ENST00000316707 DNMBPQ6XZF7 1577 aa6.24□□□□□ -1.41
PTPN13-201ENST00000316707 ANKRD30AQ9BXX3 1397 aa6.24□□□□□ -1.41
PTPN13-201ENST00000316707 UHRF1BP1Q6BDS2 1440 aa6.23□□□□□ -1.41
PTPN13-201ENST00000316707 DENND4BO75064 1496 aaPredicted RBP6.23□□□□□ -1.41
PTPN13-201ENST00000316707 L1TD1Q5T7N2 865 aaKnown RBP6.23□□□□□ -1.41
PTPN13-201ENST00000316707 HECW1Q76N89 1606 aa6.23□□□□□ -1.41
PTPN13-201ENST00000316707 BECN1Q14457 450 aa6.23□□□□□ -1.41
PTPN13-201ENST00000316707 DAPK1P53355 1430 aa6.23□□□□□ -1.41
PTPN13-201ENST00000316707 SUPT6HQ7KZ85 1726 aaKnown RBP6.23□□□□□ -1.41
PTPN13-201ENST00000316707 PKD2Q13563 968 aa6.23□□□□□ -1.41
PTPN13-201ENST00000316707 PLEKHH2Q8IVE3 1493 aa6.22□□□□□ -1.41
PTPN13-201ENST00000316707 TOPBP1Q92547 1522 aa6.22□□□□□ -1.41
PTPN13-201ENST00000316707 CFDP1Q9UEE9 299 aaPredicted RBP6.22□□□□□ -1.41
PTPN13-201ENST00000316707 RAD54L2Q9Y4B4 1467 aa6.22□□□□□ -1.41
PTPN13-201ENST00000316707 AAMPQ13685 434 aa6.22□□□□□ -1.41
PTPN13-201ENST00000316707 EIF3AQ14152 1382 aaKnown RBP6.22□□□□□ -1.41
PTPN13-201ENST00000316707 FOXD1Q16676 465 aa6.22□□□□□ -1.41
PTPN13-201ENST00000316707 EPRSP07814 1512 aaKnown RBP6.21□□□□□ -1.41
PTPN13-201ENST00000316707 ABCA5Q8WWZ7 1642 aa6.21□□□□□ -1.41
PTPN13-201ENST00000316707 ABCC5O15440 1437 aa6.21□□□□□ -1.42
PTPN13-201ENST00000316707 TDRD9Q8NDG6 1382 aaKnown RBP6.21□□□□□ -1.42
PTPN13-201ENST00000316707 EIF5BO60841 1220 aaKnown RBP6.21□□□□□ -1.42
PTPN13-201ENST00000316707 PARD3Q8TEW0 1356 aa6.21□□□□□ -1.42
PTPN13-201ENST00000316707 ARHGEF12Q9NZN5 1544 aa6.21□□□□□ -1.42
PTPN13-201ENST00000316707 RTN4Q9NQC3 1192 aaKnown RBP6.2□□□□□ -1.42
PTPN13-201ENST00000316707 GAPVD1Q14C86 1478 aa6.2□□□□□ -1.42
PTPN13-201ENST00000316707 RALGAPBQ86X10 1494 aa6.2□□□□□ -1.42
PTPN13-201ENST00000316707 ST20-MTHFSA0A0A6YYL1 179 aa6.2□□□□□ -1.42
PTPN13-201ENST00000316707 TSPY4P0CV99 314 aa6.2□□□□□ -1.42
PTPN13-201ENST00000316707 TSPY10P0CW01 314 aa6.2□□□□□ -1.42
PTPN13-201ENST00000316707 SAMD9Q5K651 1589 aa6.2□□□□□ -1.42
PTPN13-201ENST00000316707 CDCA8Q53HL2 280 aa6.2□□□□□ -1.42
PTPN13-201ENST00000316707 SLC24A1O60721 1099 aa6.19□□□□□ -1.42
PTPN13-201ENST00000316707 UPF2Q9HAU5 1272 aaKnown RBP6.19□□□□□ -1.42
PTPN13-201ENST00000316707 ISY1Q9ULR0 285 aaKnown RBP6.19□□□□□ -1.42
PTPN13-201ENST00000316707 MBD5Q9P267 1494 aa6.19□□□□□ -1.42
PTPN13-201ENST00000316707 FRAT1Q92837 279 aaPredicted RBP6.19□□□□□ -1.42
PTPN13-201ENST00000316707 BRPF3Q9ULD4 1205 aa6.19□□□□□ -1.42
PTPN13-201ENST00000316707 MAPK8IP3Q9UPT6 1336 aa6.19□□□□□ -1.42
PTPN13-201ENST00000316707 CNGB1Q14028 1251 aaPredicted RBP6.19□□□□□ -1.42
PTPN13-201ENST00000316707 CGNL1Q0VF96 1302 aa6.19□□□□□ -1.42
PTPN13-201ENST00000316707 ANKRD50Q9ULJ7 1429 aa6.19□□□□□ -1.42
PTPN13-201ENST00000316707 RSPH4AQ5TD94 716 aa6.18□□□□□ -1.42
PTPN13-201ENST00000316707 STAC3Q96MF2 364 aa6.18□□□□□ -1.42
PTPN13-201ENST00000316707 NUP155O75694 1391 aa6.18□□□□□ -1.42
PTPN13-201ENST00000316707 PDS5BQ9NTI5 1447 aa6.18□□□□□ -1.42
PTPN13-201ENST00000316707 GOLGA2Q08379 1002 aa6.18□□□□□ -1.42
PTPN13-201ENST00000316707 CRBNQ96SW2 442 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms