RNA–Protein interactions for RNA: ENST00000307106.3

SMIM4-201, Transcript of small integral membrane protein 4, humanhuman

TSL 2 BASIC

Gene SMIM4, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM4-201ENST00000307106 MLECQ14165 292 aa20.28■□□□□ 0.84
SMIM4-201ENST00000307106 SPATA31D1Q6ZQQ2 1576 aa20.28■□□□□ 0.84
SMIM4-201ENST00000307106 SETD1BQ9UPS6 1966 aaKnown RBP20.28■□□□□ 0.84
SMIM4-201ENST00000307106 PLEKHD1A6NEE1 506 aa20.27■□□□□ 0.84
SMIM4-201ENST00000307106 ARHGEF12Q9NZN5 1544 aa20.26■□□□□ 0.83
SMIM4-201ENST00000307106 MYO5CQ9NQX4 1742 aa20.21■□□□□ 0.83
SMIM4-201ENST00000307106 C9orf84Q5VXU9 1444 aa20.19■□□□□ 0.82
SMIM4-201ENST00000307106 ATP10AO60312 1499 aa20.18■□□□□ 0.82
SMIM4-201ENST00000307106 DMRT2Q9Y5R5 561 aa20.18■□□□□ 0.82
SMIM4-201ENST00000307106 SCAPERQ9BY12 1400 aa20.18■□□□□ 0.82
SMIM4-201ENST00000307106 RANGAP1P46060 587 aaPredicted RBP20.16■□□□□ 0.82
SMIM4-201ENST00000307106 CEBPAP49715 358 aaPredicted RBP20.15■□□□□ 0.82
SMIM4-201ENST00000307106 UHRF1BP1Q6BDS2 1440 aa20.15■□□□□ 0.82
SMIM4-201ENST00000307106 C3P01024 1663 aa20.15■□□□□ 0.82
SMIM4-201ENST00000307106 CDK13Q14004 1512 aaKnown RBP20.13■□□□□ 0.81
SMIM4-201ENST00000307106 PLCH2O75038 1416 aa20.13■□□□□ 0.81
SMIM4-201ENST00000307106 CSRNP3Q8WYN3 585 aa20.12■□□□□ 0.81
SMIM4-201ENST00000307106 PTPRTO14522 1441 aa20.09■□□□□ 0.81
SMIM4-201ENST00000307106 LTBP4Q8N2S1 1624 aa20.08■□□□□ 0.8
SMIM4-201ENST00000307106 KDM5CP41229 1560 aa20.06■□□□□ 0.8
SMIM4-201ENST00000307106 IQSEC2Q5JU85 1478 aa20.05■□□□□ 0.8
SMIM4-201ENST00000307106 ZNF518AQ6AHZ1 1483 aa20.05■□□□□ 0.8
SMIM4-201ENST00000307106 DIP2CQ9Y2E4 1556 aa20.05■□□□□ 0.8
SMIM4-201ENST00000307106 REREQ9P2R6 1566 aa20.04■□□□□ 0.8
SMIM4-201ENST00000307106 KIF14Q15058 1648 aa20.04■□□□□ 0.8
SMIM4-201ENST00000307106 EFCAB2Q5VUJ9 269 aa20.03■□□□□ 0.8
SMIM4-201ENST00000307106 ABCA6Q8N139 1617 aa20.02■□□□□ 0.8
SMIM4-201ENST00000307106 CDC42BPBQ9Y5S2 1711 aa20■□□□□ 0.79
SMIM4-201ENST00000307106 ARHGAP5Q13017 1502 aa20■□□□□ 0.79
SMIM4-201ENST00000307106 MYT1LQ9UL68 1186 aa19.98■□□□□ 0.79
SMIM4-201ENST00000307106 SUPT6HQ7KZ85 1726 aaKnown RBP19.97■□□□□ 0.79
SMIM4-201ENST00000307106 EEA1Q15075 1411 aa19.96■□□□□ 0.79
SMIM4-201ENST00000307106 NCOA1Q15788 1441 aa19.96■□□□□ 0.79
SMIM4-201ENST00000307106 AFAP1Q8N556 730 aa19.96■□□□□ 0.79
SMIM4-201ENST00000307106 LRRIQ1Q96JM4 1722 aa19.96■□□□□ 0.79
SMIM4-201ENST00000307106 TRAPPC8Q9Y2L5 1435 aa19.94■□□□□ 0.78
SMIM4-201ENST00000307106 ITSN2Q9NZM3 1697 aa19.94■□□□□ 0.78
SMIM4-201ENST00000307106 AGLP35573 1532 aa19.94■□□□□ 0.78
SMIM4-201ENST00000307106 CAMSAP1Q5T5Y3 1602 aa19.94■□□□□ 0.78
SMIM4-201ENST00000307106 MROH2AA6NES4 1674 aa19.94■□□□□ 0.78
SMIM4-201ENST00000307106 ESF1Q9H501 851 aaKnown RBP19.93■□□□□ 0.78
SMIM4-201ENST00000307106 MLH3Q9UHC1 1453 aa19.92■□□□□ 0.78
SMIM4-201ENST00000307106 KIDINS220Q9ULH0 1771 aa19.92■□□□□ 0.78
SMIM4-201ENST00000307106 ATP1B4Q9UN42 357 aaPredicted RBP19.91■□□□□ 0.78
SMIM4-201ENST00000307106 PREX2Q70Z35 1606 aa19.91■□□□□ 0.78
SMIM4-201ENST00000307106 CDK11AQ9UQ88 783 aaPredicted RBP19.9■□□□□ 0.78
SMIM4-201ENST00000307106 TROQ12816 1431 aaPredicted RBP19.89■□□□□ 0.77
SMIM4-201ENST00000307106 ABCC1P33527 1531 aa19.88■□□□□ 0.77
SMIM4-201ENST00000307106 FMN1Q68DA7 1419 aa19.88■□□□□ 0.77
SMIM4-201ENST00000307106 CNTLNQ9NXG0 1405 aa19.88■□□□□ 0.77
SMIM4-201ENST00000307106 ZNF142P52746 1687 aaPredicted RBP19.87■□□□□ 0.77
SMIM4-201ENST00000307106 CLIP1P30622 1438 aa19.86■□□□□ 0.77
SMIM4-201ENST00000307106 CDC42BPAQ5VT25 1732 aa19.85■□□□□ 0.77
SMIM4-201ENST00000307106 MYO3AQ8NEV4 1616 aa19.84■□□□□ 0.77
SMIM4-201ENST00000307106 UBAP1LF5GYI3 381 aa19.84■□□□□ 0.77
SMIM4-201ENST00000307106 CLTCQ00610 1675 aaKnown RBP19.84■□□□□ 0.77
SMIM4-201ENST00000307106 NPATQ14207 1427 aa19.83■□□□□ 0.76
SMIM4-201ENST00000307106 ZNF335Q9H4Z2 1342 aaPredicted RBP19.82■□□□□ 0.76
SMIM4-201ENST00000307106 ARHGAP35Q9NRY4 1499 aa19.8■□□□□ 0.76
SMIM4-201ENST00000307106 NCKAP5LQ9HCH0 1330 aa19.79■□□□□ 0.76
SMIM4-201ENST00000307106 MED1Q15648 1581 aaPredicted RBP19.78■□□□□ 0.76
SMIM4-201ENST00000307106 CEP170BQ9Y4F5 1589 aaPredicted RBP19.78■□□□□ 0.76
SMIM4-201ENST00000307106 PLA2R1Q13018 1463 aa19.77■□□□□ 0.76
SMIM4-201ENST00000307106 SAMD9LQ8IVG5 1584 aa19.76■□□□□ 0.75
SMIM4-201ENST00000307106 ZMYM3Q14202 1370 aa19.76■□□□□ 0.75
SMIM4-201ENST00000307106 POLR1AO95602 1720 aaPredicted RBP19.74■□□□□ 0.75
SMIM4-201ENST00000307106 TCOF1Q13428 1488 aaKnown RBP19.73■□□□□ 0.75
SMIM4-201ENST00000307106 PKD2Q13563 968 aa19.73■□□□□ 0.75
SMIM4-201ENST00000307106 UBTFP17480 764 aaKnown RBP19.71■□□□□ 0.75
SMIM4-201ENST00000307106 EHMT2Q96KQ7 1210 aa19.69■□□□□ 0.74
SMIM4-201ENST00000307106 SYCP2Q9BX26 1530 aa19.69■□□□□ 0.74
SMIM4-201ENST00000307106 PLXNC1O60486 1568 aa19.69■□□□□ 0.74
SMIM4-201ENST00000307106 PTPRKQ15262 1439 aa19.68■□□□□ 0.74
SMIM4-201ENST00000307106 CCDC18Q5T9S5 1454 aa19.67■□□□□ 0.74
SMIM4-201ENST00000307106 ATP7AQ04656 1500 aa19.67■□□□□ 0.74
SMIM4-201ENST00000307106 INO80Q9ULG1 1556 aaPredicted RBP19.67■□□□□ 0.74
SMIM4-201ENST00000307106 PPP6R1Q9UPN7 881 aa19.67■□□□□ 0.74
SMIM4-201ENST00000307106 SCAF1Q9H7N4 1312 aaKnown RBP19.67■□□□□ 0.74
SMIM4-201ENST00000307106 DNMT1P26358 1616 aaKnown RBP19.66■□□□□ 0.74
SMIM4-201ENST00000307106 HSPA1LP34931 641 aa19.66■□□□□ 0.74
SMIM4-201ENST00000307106 ADGBQ8N7X0 1667 aa19.65■□□□□ 0.74
SMIM4-201ENST00000307106 SPAG9O60271 1321 aaKnown RBP19.64■□□□□ 0.73
SMIM4-201ENST00000307106 CPS1P31327 1500 aa19.63■□□□□ 0.73
SMIM4-201ENST00000307106 PIP4K2BP78356 416 aa19.63■□□□□ 0.73
SMIM4-201ENST00000307106 ZNF777Q9ULD5 760 aaPredicted RBP19.63■□□□□ 0.73
SMIM4-201ENST00000307106 A2MP01023 1474 aa19.62■□□□□ 0.73
SMIM4-201ENST00000307106 NEURL4Q96JN8 1562 aa19.61■□□□□ 0.73
SMIM4-201ENST00000307106 A2ML1A8K2U0 1454 aa19.6■□□□□ 0.73
SMIM4-201ENST00000307106 CASKIN1Q8WXD9 1431 aa19.6■□□□□ 0.73
SMIM4-201ENST00000307106 TOM1O60784 492 aa19.6■□□□□ 0.73
SMIM4-201ENST00000307106 GGT6Q6P531 493 aa19.59■□□□□ 0.73
SMIM4-201ENST00000307106 HNRNPMP52272 730 aaKnown RBP eCLIP19.58■□□□□ 0.72
SMIM4-201ENST00000307106 GPATCH8Q9UKJ3 1502 aaKnown RBP19.57■□□□□ 0.72
SMIM4-201ENST00000307106 SHANK2Q9UPX8 1470 aa19.57■□□□□ 0.72
SMIM4-201ENST00000307106 PHF23Q9BUL5 403 aaPredicted RBP19.57■□□□□ 0.72
SMIM4-201ENST00000307106 ALKQ9UM73 1620 aa19.54■□□□□ 0.72
SMIM4-201ENST00000307106 PLEKHH2Q8IVE3 1493 aa19.54■□□□□ 0.72
SMIM4-201ENST00000307106 KIAA1107Q9UPP5 1409 aa19.54■□□□□ 0.72
SMIM4-201ENST00000307106 VWDEQ8N2E2 1590 aa19.53■□□□□ 0.72
SMIM4-201ENST00000307106 FYCO1Q9BQS8 1478 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms